Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS30730

Experiment: malate (C) and Ammonium chloride (N); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	malate (C) and Ammonium chloride (N); with MOPS
2,719,072	+		PFLU_RS12255	0.11	+0.9
2,719,072	+		PFLU_RS12255	0.11	-0.2
2,719,072	+		PFLU_RS12255	0.11	+0.9
2,719,072	+		PFLU_RS12255	0.11	-0.5
2,719,073	-		PFLU_RS12255	0.11	-0.0
2,719,073	-		PFLU_RS12255	0.11	+1.1
2,719,084	+		PFLU_RS12255	0.12	+1.2
2,719,084	+		PFLU_RS12255	0.12	+0.6
2,719,084	+		PFLU_RS12255	0.12	-1.7
2,719,084	+		PFLU_RS12255	0.12	+0.4
2,719,084	+		PFLU_RS12255	0.12	+1.3
2,719,085	-		PFLU_RS12255	0.12	+1.0
2,719,085	-		PFLU_RS12255	0.12	+0.3
2,719,085	-		PFLU_RS12255	0.12	+0.1
2,719,112	+		PFLU_RS12255	0.15	+1.2
2,719,127	+		PFLU_RS12255	0.16	+1.6
2,719,128	-		PFLU_RS12255	0.16	+0.3
2,719,134	-		PFLU_RS12255	0.17	+1.2
2,719,175	+		PFLU_RS12255	0.21	+0.7
2,719,175	+		PFLU_RS12255	0.21	-0.4
2,719,175	+		PFLU_RS12255	0.21	+0.1
2,719,175	+		PFLU_RS12255	0.21	-2.1
2,719,175	+		PFLU_RS12255	0.21	-1.2
2,719,175	+		PFLU_RS12255	0.21	+1.0
2,719,175	+		PFLU_RS12255	0.21	+1.1
2,719,176	-		PFLU_RS12255	0.21	-0.3
2,719,176	-		PFLU_RS12255	0.21	+0.6
2,719,238	+		PFLU_RS12255	0.27	+0.2
2,719,238	+		PFLU_RS12255	0.27	+0.5
2,719,238	+		PFLU_RS12255	0.27	+0.1
2,719,238	+		PFLU_RS12255	0.27	+0.1
2,719,238	+		PFLU_RS12255	0.27	-0.6
2,719,238	+		PFLU_RS12255	0.27	+0.2
2,719,238	+		PFLU_RS12255	0.27	-0.2
2,719,238	+		PFLU_RS12255	0.27	+0.9
2,719,238	+		PFLU_RS12255	0.27	-0.5
2,719,239	-		PFLU_RS12255	0.27	-1.5
2,719,239	-		PFLU_RS12255	0.27	+0.8
2,719,239	-		PFLU_RS12255	0.27	-0.9
2,719,278	-		PFLU_RS12255	0.31	+1.3
2,719,405	+		PFLU_RS12255	0.43	-0.2
2,719,405	+		PFLU_RS12255	0.43	+0.9
2,719,405	+		PFLU_RS12255	0.43	+0.7
2,719,405	+		PFLU_RS12255	0.43	-0.0
2,719,405	+		PFLU_RS12255	0.43	-0.2
2,719,405	+		PFLU_RS12255	0.43	+2.4
2,719,405	+		PFLU_RS12255	0.43	+2.2
2,719,405	+		PFLU_RS12255	0.43	-0.8
2,719,405	+		PFLU_RS12255	0.43	+0.5
2,719,405	+		PFLU_RS12255	0.43	-0.9
2,719,405	+		PFLU_RS12255	0.43	+0.5
2,719,405	+		PFLU_RS12255	0.43	+1.0
2,719,405	+		PFLU_RS12255	0.43	-0.1
2,719,406	-		PFLU_RS12255	0.43	-0.0
2,719,406	-		PFLU_RS12255	0.43	+0.2
2,719,406	-		PFLU_RS12255	0.43	+1.1
2,719,406	-		PFLU_RS12255	0.43	+1.4
2,719,406	-		PFLU_RS12255	0.43	+0.1
2,719,406	-		PFLU_RS12255	0.43	+1.6
2,719,409	+		PFLU_RS12255	0.44	+0.7
2,719,409	+		PFLU_RS12255	0.44	-0.8
2,719,409	+		PFLU_RS12255	0.44	+0.1
2,719,409	+		PFLU_RS12255	0.44	-1.0
2,719,409	+		PFLU_RS12255	0.44	+0.3
2,719,409	+		PFLU_RS12255	0.44	-2.2
2,719,409	+		PFLU_RS12255	0.44	+1.1
2,719,410	-		PFLU_RS12255	0.44	-0.8
2,719,410	-		PFLU_RS12255	0.44	-0.6
2,719,410	-		PFLU_RS12255	0.44	-1.4
2,719,410	-		PFLU_RS12255	0.44	+1.8
2,719,410	-		PFLU_RS12255	0.44	+1.0
2,719,428	+		PFLU_RS12255	0.45	-2.4
2,719,428	+		PFLU_RS12255	0.45	-0.6
2,719,428	+		PFLU_RS12255	0.45	+1.1
2,719,428	+		PFLU_RS12255	0.45	+0.1
2,719,428	+		PFLU_RS12255	0.45	+0.1
2,719,428	+		PFLU_RS12255	0.45	+0.2
2,719,428	+		PFLU_RS12255	0.45	+0.0
2,719,428	+		PFLU_RS12255	0.45	+0.2
2,719,429	-		PFLU_RS12255	0.45	-0.3
2,719,429	-		PFLU_RS12255	0.45	+0.3
2,719,429	-		PFLU_RS12255	0.45	-0.8
2,719,429	-		PFLU_RS12255	0.45	+1.4
2,719,429	-		PFLU_RS12255	0.45	-0.6
2,719,429	-		PFLU_RS12255	0.45	-0.0
2,719,429	-		PFLU_RS12255	0.45	-0.0
2,719,429	-		PFLU_RS12255	0.45	+2.2
2,719,429	-		PFLU_RS12255	0.45	+0.2
2,719,454	+		PFLU_RS12255	0.48	-0.3
2,719,454	+		PFLU_RS12255	0.48	+0.6
2,719,454	+		PFLU_RS12255	0.48	-0.1
2,719,454	+		PFLU_RS12255	0.48	-0.8
2,719,455	-		PFLU_RS12255	0.48	+1.6
2,719,475	+		PFLU_RS12255	0.50	-0.7
2,719,499	+		PFLU_RS12255	0.52	-2.4
2,719,561	+		PFLU_RS12255	0.58	+0.5
2,719,561	+		PFLU_RS12255	0.58	+0.4
2,719,561	+		PFLU_RS12255	0.58	-1.2
2,719,561	+		PFLU_RS12255	0.58	+0.8
2,719,562	-		PFLU_RS12255	0.58	-0.8
2,719,562	-		PFLU_RS12255	0.58	+0.4
2,719,562	-		PFLU_RS12255	0.58	+0.6
2,719,562	-		PFLU_RS12255	0.58	-0.0
2,719,562	-		PFLU_RS12255	0.58	+0.6
2,719,629	+		PFLU_RS12255	0.65	-0.0
2,719,629	+		PFLU_RS12255	0.65	+0.6
2,719,686	+		PFLU_RS12255	0.70	-1.1
2,719,781	+		PFLU_RS12255	0.80	+0.2
2,719,782	-		PFLU_RS12255	0.80	-0.1
2,719,841	+		PFLU_RS12255	0.86	+0.2
2,719,984	-				-0.4
2,719,987	+				-0.4
2,720,053	+				+0.0
2,720,141	-		PFLU_RS30730	0.11	-0.8
2,720,532	-		PFLU_RS30730	0.51	-0.2
2,720,549	-		PFLU_RS30730	0.53	-1.8
2,720,604	+		PFLU_RS30730	0.59	-2.0
2,720,667	-		PFLU_RS30730	0.65	-1.8
2,720,714	+		PFLU_RS30730	0.70	+0.6
2,720,825	+		PFLU_RS30730	0.82	-0.3
2,720,884	-		PFLU_RS30730	0.88	-0.9
2,720,971	-				+1.1
2,720,993	+				+1.0
2,720,993	+				+1.0
2,720,994	-				-1.4
2,721,008	+				-0.3
2,721,112	-				-0.2
2,721,142	-				-0.8
2,721,200	+				-1.0
2,721,230	+				+0.1
2,721,377	+		PFLU_RS12260	0.52	-1.8
2,721,416	+		PFLU_RS12260	0.66	+0.2
2,721,416	+		PFLU_RS12260	0.66	+0.4
2,721,417	-		PFLU_RS12260	0.66	-0.7
2,721,519	+				-0.1
2,721,519	+				-0.8
2,721,520	-				-1.6
2,721,520	-				+0.7
2,721,520	-				-0.3
2,721,525	+				+0.7
2,721,564	+				-0.6
2,721,565	-				-0.9
2,721,618	+				-1.0
2,721,618	+				-1.2
2,721,697	+				+0.6
2,721,697	+				-0.8
2,721,697	+				-0.3
2,721,698	-				+0.5
2,721,698	-				+0.6
2,721,725	+				+1.0
2,721,726	-				+0.3
2,721,734	+				+0.8
2,721,734	+				-1.2
2,721,735	-				+0.0
2,721,740	+				+0.3
2,721,740	+				+0.7
2,721,769	+				+0.5
2,721,780	+				+0.7
2,721,780	+				+1.2
2,721,800	+				-0.8
2,721,800	+				-1.2
2,721,800	+				+0.6
2,721,801	-				+0.2
2,721,827	+				-0.8
2,721,836	+				-0.3
2,721,850	-				-0.0
2,721,862	+		PFLU_RS12265	0.11	+0.6
2,721,862	+		PFLU_RS12265	0.11	+0.7
2,721,862	+		PFLU_RS12265	0.11	+0.0
2,721,862	+		PFLU_RS12265	0.11	+1.6
2,721,866	+		PFLU_RS12265	0.11	+0.1
2,721,867	-		PFLU_RS12265	0.11	-2.1
2,721,869	+		PFLU_RS12265	0.11	-0.1
2,721,869	+		PFLU_RS12265	0.11	+0.2
2,721,869	+		PFLU_RS12265	0.11	-0.6
2,721,869	+		PFLU_RS12265	0.11	+0.3
2,721,869	+		PFLU_RS12265	0.11	-0.8
2,721,869	+		PFLU_RS12265	0.11	+1.0
2,721,869	+		PFLU_RS12265	0.11	+0.2
2,721,869	+		PFLU_RS12265	0.11	+1.9
2,721,869	+		PFLU_RS12265	0.11	+1.6
2,721,870	-		PFLU_RS12265	0.11	+0.7
2,721,904	+		PFLU_RS12265	0.13	-0.8
2,721,904	+		PFLU_RS12265	0.13	+0.2
2,721,904	+		PFLU_RS12265	0.13	+0.0
2,721,904	+		PFLU_RS12265	0.13	-0.2
2,721,904	+		PFLU_RS12265	0.13	-1.6
2,721,904	+		PFLU_RS12265	0.13	-0.2
2,721,905	-		PFLU_RS12265	0.13	-0.3
2,721,905	-		PFLU_RS12265	0.13	+0.1
2,721,905	-		PFLU_RS12265	0.13	-0.2
2,721,905	-		PFLU_RS12265	0.13	-1.1
2,721,905	-		PFLU_RS12265	0.13	-0.1
2,721,905	-		PFLU_RS12265	0.13	-0.0
2,721,905	-		PFLU_RS12265	0.13	-0.4
2,721,905	-		PFLU_RS12265	0.13	+0.7
2,721,905	-		PFLU_RS12265	0.13	+0.6
2,721,905	-		PFLU_RS12265	0.13	+0.9
2,721,905	-		PFLU_RS12265	0.13	-0.5
2,721,905	-		PFLU_RS12265	0.13	-0.4
2,721,905	-		PFLU_RS12265	0.13	+0.1
2,721,923	+		PFLU_RS12265	0.13	-0.9
2,721,941	+		PFLU_RS12265	0.14	-0.3
2,721,942	-		PFLU_RS12265	0.14	-0.8
2,721,942	-		PFLU_RS12265	0.14	+1.2
2,721,985	-		PFLU_RS12265	0.16	-0.1
2,721,985	-		PFLU_RS12265	0.16	+0.6