Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS24560

Experiment: malate (C) and Ammonium chloride (N); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	malate (C) and Ammonium chloride (N); with MOPS
5,501,944	-				+1.4
5,501,944	-				-1.2
5,501,944	-				+0.3
5,501,987	-				-0.2
5,501,987	-				+0.5
5,501,987	-				-0.8
5,502,002	+				-1.4
5,502,002	+				-0.3
5,502,002	+				-1.2
5,502,003	-				-0.3
5,502,044	+				-1.9
5,502,044	+				-0.7
5,502,044	+				-1.4
5,502,133	-		PFLU_RS24555	0.12	-0.8
5,502,259	+		PFLU_RS24555	0.30	-0.2
5,502,259	+		PFLU_RS24555	0.30	+0.5
5,502,259	+		PFLU_RS24555	0.30	-1.0
5,502,259	+		PFLU_RS24555	0.30	+0.2
5,502,260	-		PFLU_RS24555	0.30	-0.2
5,502,260	-		PFLU_RS24555	0.30	+1.8
5,502,260	-		PFLU_RS24555	0.30	-0.8
5,502,313	+		PFLU_RS24555	0.37	-0.5
5,502,313	+		PFLU_RS24555	0.37	+1.8
5,502,313	+		PFLU_RS24555	0.37	-1.0
5,502,313	+		PFLU_RS24555	0.37	+1.8
5,502,313	+		PFLU_RS24555	0.37	-0.5
5,502,313	+		PFLU_RS24555	0.37	+0.8
5,502,313	+		PFLU_RS24555	0.37	-1.2
5,502,313	+		PFLU_RS24555	0.37	-1.0
5,502,313	+		PFLU_RS24555	0.37	-0.2
5,502,313	+		PFLU_RS24555	0.37	+0.2
5,502,314	-		PFLU_RS24555	0.37	-0.8
5,502,314	-		PFLU_RS24555	0.37	+0.2
5,502,314	-		PFLU_RS24555	0.37	-0.5
5,502,314	-		PFLU_RS24555	0.37	-1.5
5,502,314	-		PFLU_RS24555	0.37	+1.8
5,502,314	-		PFLU_RS24555	0.37	-0.2
5,502,314	-		PFLU_RS24555	0.37	+1.0
5,502,314	-		PFLU_RS24555	0.37	+0.2
5,502,314	-		PFLU_RS24555	0.37	-0.0
5,502,314	-		PFLU_RS24555	0.37	+0.1
5,502,314	-		PFLU_RS24555	0.37	-0.2
5,502,314	-		PFLU_RS24555	0.37	-0.0
5,502,317	+		PFLU_RS24555	0.37	+0.2
5,502,317	+		PFLU_RS24555	0.37	+0.8
5,502,317	+		PFLU_RS24555	0.37	-0.2
5,502,317	+		PFLU_RS24555	0.37	-0.5
5,502,317	+		PFLU_RS24555	0.37	-0.0
5,502,317	+		PFLU_RS24555	0.37	-1.7
5,502,317	+		PFLU_RS24555	0.37	-0.8
5,502,317	+		PFLU_RS24555	0.37	+0.2
5,502,318	-		PFLU_RS24555	0.38	-0.5
5,502,318	-		PFLU_RS24555	0.38	+0.8
5,502,318	-		PFLU_RS24555	0.38	+0.2
5,502,318	-		PFLU_RS24555	0.38	-1.0
5,502,318	-		PFLU_RS24555	0.38	+0.8
5,502,318	-		PFLU_RS24555	0.38	+1.8
5,502,322	+		PFLU_RS24555	0.38	-0.7
5,502,322	+		PFLU_RS24555	0.38	-1.0
5,502,322	+		PFLU_RS24555	0.38	+1.8
5,502,322	+		PFLU_RS24555	0.38	+0.2
5,502,322	+		PFLU_RS24555	0.38	-0.2
5,502,322	+		PFLU_RS24555	0.38	+1.8
5,502,322	+		PFLU_RS24555	0.38	-1.2
5,502,322	+		PFLU_RS24555	0.38	+0.2
5,502,322	+		PFLU_RS24555	0.38	-0.8
5,502,322	+		PFLU_RS24555	0.38	+0.8
5,502,322	+		PFLU_RS24555	0.38	+0.2
5,502,322	+		PFLU_RS24555	0.38	-0.2
5,502,322	+		PFLU_RS24555	0.38	+1.8
5,502,322	+		PFLU_RS24555	0.38	-0.8
5,502,322	+		PFLU_RS24555	0.38	-0.5
5,502,322	+		PFLU_RS24555	0.38	+0.8
5,502,322	+		PFLU_RS24555	0.38	+0.8
5,502,323	-		PFLU_RS24555	0.38	+0.2
5,502,323	-		PFLU_RS24555	0.38	-1.2
5,502,323	-		PFLU_RS24555	0.38	+1.8
5,502,323	-		PFLU_RS24555	0.38	-1.2
5,502,323	-		PFLU_RS24555	0.38	+1.2
5,502,323	-		PFLU_RS24555	0.38	-1.9
5,502,323	-		PFLU_RS24555	0.38	+0.8
5,502,323	-		PFLU_RS24555	0.38	-1.5
5,502,323	-		PFLU_RS24555	0.38	+0.8
5,502,323	-		PFLU_RS24555	0.38	+1.8
5,502,323	-		PFLU_RS24555	0.38	-0.2
5,502,323	-		PFLU_RS24555	0.38	+0.2
5,502,323	-		PFLU_RS24555	0.38	-0.7
5,502,323	-		PFLU_RS24555	0.38	+0.2
5,502,323	-		PFLU_RS24555	0.38	+0.2
5,502,323	-		PFLU_RS24555	0.38	-0.8
5,502,323	-		PFLU_RS24555	0.38	-0.2
5,502,323	-		PFLU_RS24555	0.38	+0.8
5,502,323	-		PFLU_RS24555	0.38	+0.8
5,502,323	-		PFLU_RS24555	0.38	+1.8
5,502,323	-		PFLU_RS24555	0.38	+0.8
5,502,323	-		PFLU_RS24555	0.38	+0.2
5,502,323	-		PFLU_RS24555	0.38	-0.8
5,502,377	+		PFLU_RS24555	0.46	+0.2
5,502,377	+		PFLU_RS24555	0.46	+0.2
5,502,437	+		PFLU_RS24555	0.54	+0.2
5,502,437	+		PFLU_RS24555	0.54	+0.8
5,502,437	+		PFLU_RS24555	0.54	-0.5
5,502,438	-		PFLU_RS24555	0.54	+0.2
5,502,545	+		PFLU_RS24555	0.69	-1.2
5,502,560	+		PFLU_RS24555	0.71	+0.8
5,502,560	+		PFLU_RS24555	0.71	+0.2
5,502,560	+		PFLU_RS24555	0.71	-1.2
5,502,560	+		PFLU_RS24555	0.71	-1.4
5,502,560	+		PFLU_RS24555	0.71	+0.8
5,502,561	-		PFLU_RS24555	0.71	+1.8
5,502,561	-		PFLU_RS24555	0.71	+0.2
5,502,561	-		PFLU_RS24555	0.71	+0.6
5,502,561	-		PFLU_RS24555	0.71	+0.8
5,502,581	+		PFLU_RS24555	0.73	-0.7
5,502,581	+		PFLU_RS24555	0.73	-1.8
5,502,581	+		PFLU_RS24555	0.73	-0.8
5,502,581	+		PFLU_RS24555	0.73	-1.8
5,502,582	-		PFLU_RS24555	0.74	-0.8
5,502,582	-		PFLU_RS24555	0.74	-2.1
5,502,582	-		PFLU_RS24555	0.74	-0.2
5,502,614	+		PFLU_RS24555	0.78	+1.8
5,502,614	+		PFLU_RS24555	0.78	+0.8
5,502,614	+		PFLU_RS24555	0.78	-1.0
5,502,614	+		PFLU_RS24555	0.78	+0.2
5,502,615	-		PFLU_RS24555	0.78	+1.8
5,502,615	-		PFLU_RS24555	0.78	-0.2
5,502,615	-		PFLU_RS24555	0.78	-1.0
5,502,615	-		PFLU_RS24555	0.78	+1.8
5,502,756	+				+0.2
5,502,756	+				+1.8
5,502,812	+				-1.2
5,502,813	-				+0.9
5,502,867	-				+1.5
5,502,867	-				-0.8
5,502,867	-				+0.8
5,502,945	+				+0.2
5,502,946	-				+1.2
5,502,977	+				+0.2
5,502,977	+				+1.1
5,502,977	+				-0.5
5,502,977	+				-0.7
5,502,977	+				+0.6
5,502,977	+				-0.2
5,502,977	+				-0.7
5,502,977	+				+3.4
5,502,978	-				+0.5
5,502,978	-				+1.1
5,502,978	-				-0.1
5,502,994	+				-0.5
5,502,994	+				-0.9
5,502,994	+				-1.7
5,502,995	-				+0.3
5,503,233	+		PFLU_RS24560	0.35	-0.8
5,503,233	+		PFLU_RS24560	0.35	+0.2
5,503,233	+		PFLU_RS24560	0.35	-1.4
5,503,234	-		PFLU_RS24560	0.35	+0.2
5,503,234	-		PFLU_RS24560	0.35	+0.7
5,503,234	-		PFLU_RS24560	0.35	-0.6
5,503,235	+		PFLU_RS24560	0.36	-0.4
5,503,235	+		PFLU_RS24560	0.36	+0.2
5,503,235	+		PFLU_RS24560	0.36	-0.4
5,503,235	+		PFLU_RS24560	0.36	-0.2
5,503,235	+		PFLU_RS24560	0.36	-1.2
5,503,235	+		PFLU_RS24560	0.36	+0.1
5,503,235	+		PFLU_RS24560	0.36	-1.8
5,503,235	+		PFLU_RS24560	0.36	-2.5
5,503,235	+		PFLU_RS24560	0.36	-1.8
5,503,235	+		PFLU_RS24560	0.36	+1.3
5,503,235	+		PFLU_RS24560	0.36	-0.8
5,503,235	+		PFLU_RS24560	0.36	-1.0
5,503,235	+		PFLU_RS24560	0.36	-0.8
5,503,235	+		PFLU_RS24560	0.36	+0.5
5,503,236	-		PFLU_RS24560	0.36	-0.2
5,503,236	-		PFLU_RS24560	0.36	-1.0
5,503,236	-		PFLU_RS24560	0.36	-0.6
5,503,236	-		PFLU_RS24560	0.36	+0.5
5,503,236	-		PFLU_RS24560	0.36	-2.0
5,503,236	-		PFLU_RS24560	0.36	-0.5
5,503,236	-		PFLU_RS24560	0.36	-0.3
5,503,236	-		PFLU_RS24560	0.36	+0.8
5,503,236	-		PFLU_RS24560	0.36	-0.2
5,503,236	-		PFLU_RS24560	0.36	-0.2
5,503,236	-		PFLU_RS24560	0.36	-0.6
5,503,236	-		PFLU_RS24560	0.36	-2.2
5,503,236	-		PFLU_RS24560	0.36	-1.4
5,503,303	+		PFLU_RS24560	0.43	-0.0
5,503,304	-		PFLU_RS24560	0.43	-1.7
5,503,382	+		PFLU_RS24560	0.52	-0.9
5,503,382	+		PFLU_RS24560	0.52	+1.1
5,503,382	+		PFLU_RS24560	0.52	-0.4
5,503,382	+		PFLU_RS24560	0.52	-0.8
5,503,382	+		PFLU_RS24560	0.52	+0.2
5,503,382	+		PFLU_RS24560	0.52	-1.7
5,503,382	+		PFLU_RS24560	0.52	-0.3
5,503,382	+		PFLU_RS24560	0.52	-2.0
5,503,382	+		PFLU_RS24560	0.52	+0.3
5,503,382	+		PFLU_RS24560	0.52	-0.6
5,503,382	+		PFLU_RS24560	0.52	-0.8
5,503,382	+		PFLU_RS24560	0.52	-2.7
5,503,382	+		PFLU_RS24560	0.52	-1.4
5,503,382	+		PFLU_RS24560	0.52	-0.4
5,503,382	+		PFLU_RS24560	0.52	-0.4
5,503,383	-		PFLU_RS24560	0.52	-1.9
5,503,383	-		PFLU_RS24560	0.52	-1.8
5,503,383	-		PFLU_RS24560	0.52	-0.7
5,503,383	-		PFLU_RS24560	0.52	-1.4
5,503,383	-		PFLU_RS24560	0.52	-1.2
5,503,383	-		PFLU_RS24560	0.52	+0.5
5,503,383	-		PFLU_RS24560	0.52	-2.4
5,503,383	-		PFLU_RS24560	0.52	+1.3
5,503,383	-		PFLU_RS24560	0.52	-2.2
5,503,383	-		PFLU_RS24560	0.52	-0.9
5,503,383	-		PFLU_RS24560	0.52	-1.4
5,503,383	-		PFLU_RS24560	0.52	-2.3
5,503,556	+		PFLU_RS24560	0.71	-2.0
5,503,556	+		PFLU_RS24560	0.71	+0.2
5,503,557	-		PFLU_RS24560	0.71	-0.6
5,503,562	+		PFLU_RS24560	0.72	-0.5
5,503,563	-		PFLU_RS24560	0.72	-0.6
5,503,563	-		PFLU_RS24560	0.72	+0.2
5,503,563	-		PFLU_RS24560	0.72	-1.4
5,503,610	+		PFLU_RS24560	0.77	-0.3
5,503,611	-		PFLU_RS24560	0.77	-0.1
5,503,611	-		PFLU_RS24560	0.77	+0.8
5,503,611	-		PFLU_RS24560	0.77	-1.0
5,503,611	-		PFLU_RS24560	0.77	-0.5
5,503,724	+				-1.2
5,503,725	-				-2.2
5,503,830	+				-0.9
5,503,830	+				+0.2
5,503,830	+				+0.7
5,503,830	+				+0.4
5,503,830	+				-0.0
5,503,830	+				+0.6
5,503,830	+				-0.3
5,503,831	-				+0.5
5,503,831	-				+0.4
5,503,831	-				+1.1
5,503,831	-				+1.3
5,503,831	-				+1.5
5,503,831	-				-0.5
5,503,852	-				-0.4
5,503,852	-				-1.3
5,503,852	-				-0.2
5,503,931	+				+0.2
5,503,931	+				-1.1
5,503,931	+				+0.5
5,503,931	+				-0.5
5,503,931	+				+0.4
5,503,931	+				-0.4
5,503,931	+				-0.1
5,503,931	+				-0.5
5,503,932	-				-1.4
5,503,932	-				-0.4
5,503,932	-				+0.2
5,503,932	-				-0.0
5,503,932	-				+0.8
5,503,932	-				-0.1
5,503,932	-				+0.6
5,503,935	+				+0.6
5,503,935	+				+0.1
5,503,935	+				-1.0
5,503,935	+				+0.2
5,503,935	+				-0.3
5,503,935	+				+0.1
5,503,935	+				-0.0
5,503,935	+				-1.5
5,503,935	+				-0.3
5,503,935	+				+0.2
5,503,935	+				+0.7
5,503,935	+				+1.4
5,503,935	+				-0.4
5,503,935	+				-0.3
5,503,935	+				+0.2
5,503,935	+				+0.5
5,503,935	+				-1.0
5,503,935	+				+1.2
5,503,936	-				-1.1
5,503,936	-				+0.8
5,503,936	-				-2.0
5,503,936	-				+0.8
5,503,936	-				+0.8
5,503,936	-				-0.8
5,503,936	-				+0.3
5,503,936	-				-0.6
5,503,936	-				-0.0
5,503,936	-				-1.7
5,503,936	-				-1.1
5,503,936	-				-2.1
5,503,936	-				+0.1
5,503,936	-				+0.7
5,503,936	-				+0.5
5,503,936	-				-1.1
5,503,936	-				-0.6
5,503,936	-				-0.7
5,503,936	-				+0.4
5,503,936	-				-0.3
5,503,936	-				-0.2
5,503,936	-				-0.9
5,503,936	-				-0.7
5,503,936	-				-0.5
5,503,936	-				+0.1
5,503,936	-				-1.9
5,503,936	-				-0.1
5,503,936	-				-0.3
5,503,936	-				+0.6
5,503,936	-				+0.9
5,503,936	-				+0.3
5,503,936	-				+0.1
5,503,936	-				-1.2
5,503,936	-				+0.8
5,503,936	-				+1.3
5,503,936	-				-0.4
5,503,936	-				-0.6
5,503,936	-				+0.3
5,503,936	-				+0.3
5,503,936	-				-2.5
5,503,937	+				+0.0
5,503,937	+				+1.9
5,503,937	+				-0.2
5,503,937	+				+1.8
5,503,937	+				-0.2
5,503,937	+				+0.7
5,503,937	+				-1.1
5,503,937	+				+0.4
5,503,937	+				-0.4
5,503,937	+				-0.4
5,503,937	+				+0.2
5,503,937	+				+0.4
5,503,937	+				-0.6
5,503,937	+				-1.1
5,503,937	+				+0.7
5,503,937	+				-0.4
5,503,937	+				-1.5
5,503,937	+				-1.0
5,503,937	+				-0.3
5,503,938	-				+0.5
5,503,938	-				+0.2
5,503,938	-				+0.6
5,503,938	-				-0.6
5,503,938	-				-0.0
5,503,938	-				-0.0
5,503,938	-				+1.1
5,503,938	-				-1.7
5,503,938	-				-1.1
5,503,938	-				-0.8
5,503,938	-				-1.3
5,503,938	-				-0.1
5,503,938	-				-1.2
5,503,938	-				+0.1
5,503,938	-				-0.4
5,503,938	-				-0.4
5,503,938	-				-1.7
5,503,938	-				-0.4
5,503,938	-				-1.2
5,503,938	-				-0.5
5,503,938	-				+0.5
5,503,938	-				+0.5
5,503,938	-				-1.9
5,503,938	-				-1.2
5,503,938	-				+0.7
5,503,938	-				-0.8
5,503,938	-				-0.2
5,503,938	-				+0.6
5,503,938	-				+1.1
5,503,938	-				+0.1
5,503,938	-				+1.6
5,503,938	-				+0.6
5,503,938	-				+0.7
5,503,938	-				+1.2
5,503,938	-				+0.3
5,503,938	-				-1.7
5,503,938	-				-0.5
5,503,938	-				-0.4
5,503,938	-				-1.2
5,503,938	-				-0.0
5,503,938	-				+0.5
5,503,938	-				-0.4
5,503,939	+				+0.5
5,503,940	-				-0.9
5,503,940	-				+1.0
5,503,940	-				+0.2
5,503,940	-				+0.1
5,503,940	-				-1.8
5,503,940	-				+0.4
5,503,940	-				+0.8
5,503,940	-				-1.2
5,503,940	-				-0.2
5,503,940	-				+0.1
5,503,940	-				-0.6
5,503,940	-				-0.9
5,503,940	-				+0.7
5,503,940	-				-0.0
5,503,940	-				-1.1
5,503,940	-				+0.9
5,503,940	-				+0.1
5,503,940	-				-0.4
5,503,940	-				+1.0
5,503,940	-				-0.9
5,503,940	-				+0.2
5,503,940	-				+0.9
5,503,940	-				-0.0
5,503,940	-				+0.1
5,503,940	-				+0.5
5,503,940	-				-0.9
5,503,940	-				+0.4
5,503,940	-				+0.2
5,503,940	-				+0.4
5,503,940	-				-1.0
5,503,940	-				+0.5
5,503,940	-				-1.4
5,503,940	-				-0.5
5,503,940	-				-0.0
5,503,940	-				+0.5
5,503,940	-				+0.2
5,503,940	-				+0.7
5,503,940	-				+0.4
5,503,940	-				-0.2
5,503,940	-				+0.3
5,503,940	-				+0.1
5,503,940	-				+1.5
5,503,940	-				+0.8
5,503,940	-				-2.4
5,503,940	-				-0.4
5,503,940	-				+0.2
5,503,940	-				-0.5
5,503,940	-				-1.2
5,503,940	-				-1.3
5,503,940	-				-1.4
5,503,940	-				-0.8
5,503,940	-				-0.7
5,503,940	-				+0.5
5,503,940	-				+0.0
5,503,940	-				+0.2
5,503,940	-				-0.4
5,503,940	-				-0.4
5,503,952	-				-0.7
5,503,952	-				-0.3
5,503,952	-				+1.1
5,503,952	-				+0.4
5,503,952	-				+0.5
5,503,995	+				+0.1
5,504,018	+				+0.1
5,504,018	+				+0.4
5,504,018	+				-0.2
5,504,079	+				+0.6
5,504,079	+				-0.2
5,504,079	+				+0.5
5,504,079	+				-0.5
5,504,079	+				-0.6
5,504,091	+				-0.0
5,504,119	+				+0.5
5,504,119	+				-1.7
5,504,119	+				-1.2
5,504,119	+				+0.4
5,504,119	+				-1.2
5,504,119	+				+1.1
5,504,119	+				+0.0
5,504,119	+				-0.4
5,504,119	+				-0.6
5,504,119	+				-1.5
5,504,119	+				+0.0
5,504,119	+				-0.1
5,504,119	+				+0.6
5,504,119	+				+0.0
5,504,119	+				+0.1
5,504,120	-				+0.2
5,504,120	-				-0.8
5,504,120	-				-0.2
5,504,123	+				-0.2
5,504,124	-				-0.1
5,504,155	-				+0.3
5,504,155	-				+0.4
5,504,155	-				+0.7
5,504,189	-				-0.2
5,504,189	-				+1.0
5,504,189	-				+0.1
5,504,189	-				+0.3
5,504,240	-		PFLU_RS24565	0.15	-0.0
5,504,240	-		PFLU_RS24565	0.15	-1.5
5,504,243	-		PFLU_RS24565	0.16	+0.4
5,504,243	-		PFLU_RS24565	0.16	-0.8
5,504,554	-				-0.2
5,504,568	-				+0.3
5,504,585	-				+1.5
5,504,585	-				+1.4
5,504,585	-				-0.9
5,504,585	-				-0.1
5,504,585	-				+0.1
5,504,585	-				+0.5
5,504,585	-				+0.8
5,504,585	-				-2.1