Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS13000

Experiment: malate (C) and Ammonium chloride (N); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	malate (C) and Ammonium chloride (N); with MOPS
2,932,735	+		PFLU_RS12995	0.46	+0.0
2,932,735	+		PFLU_RS12995	0.46	-0.7
2,932,769	+		PFLU_RS12995	0.49	+0.4
2,932,770	-		PFLU_RS12995	0.49	-1.8
2,932,786	+		PFLU_RS12995	0.50	+0.3
2,932,826	+		PFLU_RS12995	0.53	-1.0
2,932,826	+		PFLU_RS12995	0.53	-0.6
2,932,826	+		PFLU_RS12995	0.53	+0.1
2,932,826	+		PFLU_RS12995	0.53	+0.5
2,932,827	-		PFLU_RS12995	0.53	+0.1
2,932,827	-		PFLU_RS12995	0.53	+1.2
2,932,827	-		PFLU_RS12995	0.53	-0.9
2,932,827	-		PFLU_RS12995	0.53	+0.0
2,932,827	-		PFLU_RS12995	0.53	+0.7
2,932,868	+		PFLU_RS12995	0.56	+0.6
2,932,868	+		PFLU_RS12995	0.56	-0.4
2,932,868	+		PFLU_RS12995	0.56	-1.5
2,932,869	-		PFLU_RS12995	0.56	-0.1
2,932,869	-		PFLU_RS12995	0.56	-1.0
2,932,869	-		PFLU_RS12995	0.56	+0.3
2,932,938	+		PFLU_RS12995	0.61	+1.4
2,933,175	+		PFLU_RS12995	0.77	+0.3
2,933,176	-		PFLU_RS12995	0.77	-0.2
2,933,176	-		PFLU_RS12995	0.77	-0.6
2,933,185	+		PFLU_RS12995	0.78	+0.6
2,933,186	-		PFLU_RS12995	0.78	-1.3
2,933,230	+		PFLU_RS12995	0.81	+0.8
2,933,230	+		PFLU_RS12995	0.81	-0.4
2,933,231	-		PFLU_RS12995	0.81	+1.9
2,933,269	-		PFLU_RS12995	0.83	+0.6
2,933,293	+		PFLU_RS12995	0.85	-1.1
2,933,294	-		PFLU_RS12995	0.85	-0.1
2,933,294	-		PFLU_RS12995	0.85	-0.5
2,933,305	+		PFLU_RS12995	0.86	+0.7
2,933,321	-		PFLU_RS12995	0.87	-1.2
2,933,338	-		PFLU_RS12995	0.88	-0.2
2,933,386	+				+0.3
2,933,408	-				+0.2
2,933,408	-				-0.9
2,933,454	-				-0.1
2,933,454	-				-0.3
2,933,506	+				-1.1
2,933,506	+				+0.4
2,933,507	-				+0.6
2,933,507	-				+0.5
2,933,539	+				-0.0
2,933,539	+				-1.3
2,933,602	+				-1.0
2,933,603	-				+0.1
2,933,603	-				-1.3
2,933,644	+				-1.3
2,933,644	+				-1.1
2,933,644	+				-1.3
2,933,644	+				-0.5
2,933,644	+				-0.6
2,933,644	+				+0.2
2,933,644	+				+0.2
2,933,645	-				+0.2
2,933,645	-				-1.8
2,933,645	-				+0.7
2,933,668	+				+1.9
2,933,668	+				-0.6
2,933,668	+				-1.0
2,933,839	+				-1.6
2,933,839	+				-1.5
2,933,840	-				-2.6
2,933,840	-				-0.3
2,933,840	-				-0.8
2,933,840	-				-1.6
2,933,840	-				-1.4
2,933,840	-				+0.5
2,933,840	-				-0.9
2,933,887	+				-1.0
2,933,904	-		PFLU_RS13000	0.10	-0.2
2,933,980	+		PFLU_RS13000	0.12	+0.2
2,933,980	+		PFLU_RS13000	0.12	+0.5
2,933,981	-		PFLU_RS13000	0.12	-0.8
2,933,981	-		PFLU_RS13000	0.12	-1.9
2,934,001	+		PFLU_RS13000	0.13	-0.6
2,934,001	+		PFLU_RS13000	0.13	-0.2
2,934,001	+		PFLU_RS13000	0.13	-1.1
2,934,002	-		PFLU_RS13000	0.13	-0.1
2,934,002	-		PFLU_RS13000	0.13	-0.8
2,934,002	-		PFLU_RS13000	0.13	+1.0
2,934,002	-		PFLU_RS13000	0.13	-0.7
2,934,058	+		PFLU_RS13000	0.14	-0.9
2,934,059	-		PFLU_RS13000	0.14	-0.3
2,934,059	-		PFLU_RS13000	0.14	-2.2
2,934,059	-		PFLU_RS13000	0.14	-0.2
2,934,087	+		PFLU_RS13000	0.15	+0.1
2,934,087	+		PFLU_RS13000	0.15	-2.5
2,934,087	+		PFLU_RS13000	0.15	-1.6
2,934,088	-		PFLU_RS13000	0.15	-0.2
2,934,088	-		PFLU_RS13000	0.15	-1.6
2,934,088	-		PFLU_RS13000	0.15	-1.5
2,934,088	-		PFLU_RS13000	0.15	-3.2
2,934,184	+		PFLU_RS13000	0.18	-0.1
2,934,185	-		PFLU_RS13000	0.18	-0.9
2,934,185	-		PFLU_RS13000	0.18	-0.2
2,934,298	+		PFLU_RS13000	0.21	+0.1
2,934,298	+		PFLU_RS13000	0.21	-0.4
2,934,299	-		PFLU_RS13000	0.21	+0.8
2,934,299	-		PFLU_RS13000	0.21	+1.0
2,934,397	+		PFLU_RS13000	0.23	+1.5
2,934,397	+		PFLU_RS13000	0.23	-0.8
2,934,398	-		PFLU_RS13000	0.23	-0.3
2,934,398	-		PFLU_RS13000	0.23	-2.6
2,934,398	-		PFLU_RS13000	0.23	-1.5
2,934,408	+		PFLU_RS13000	0.24	-0.1
2,934,408	+		PFLU_RS13000	0.24	-0.5
2,934,408	+		PFLU_RS13000	0.24	-1.3
2,934,408	+		PFLU_RS13000	0.24	-1.8
2,934,409	-		PFLU_RS13000	0.24	-0.8
2,934,409	-		PFLU_RS13000	0.24	-0.7
2,934,432	+		PFLU_RS13000	0.24	-0.7
2,934,432	+		PFLU_RS13000	0.24	-1.1
2,934,433	-		PFLU_RS13000	0.24	-0.2
2,934,433	-		PFLU_RS13000	0.24	-0.3
2,934,433	-		PFLU_RS13000	0.24	-0.2
2,934,469	+		PFLU_RS13000	0.25	-1.7
2,934,469	+		PFLU_RS13000	0.25	+0.7
2,934,469	+		PFLU_RS13000	0.25	+0.3
2,934,470	-		PFLU_RS13000	0.25	-0.9
2,934,470	-		PFLU_RS13000	0.25	-0.7
2,934,470	-		PFLU_RS13000	0.25	-1.4
2,934,470	-		PFLU_RS13000	0.25	+0.1
2,934,470	-		PFLU_RS13000	0.25	-3.1
2,934,470	-		PFLU_RS13000	0.25	-1.6
2,934,470	-		PFLU_RS13000	0.25	-2.8
2,934,470	-		PFLU_RS13000	0.25	+0.5
2,934,571	+		PFLU_RS13000	0.28	-1.9
2,934,571	+		PFLU_RS13000	0.28	-1.2
2,934,571	+		PFLU_RS13000	0.28	-0.8
2,934,571	+		PFLU_RS13000	0.28	-1.9
2,934,572	-		PFLU_RS13000	0.28	-0.6
2,934,572	-		PFLU_RS13000	0.28	-2.1
2,934,572	-		PFLU_RS13000	0.28	-0.1
2,934,664	+		PFLU_RS13000	0.31	-0.3
2,934,664	+		PFLU_RS13000	0.31	-0.6
2,934,664	+		PFLU_RS13000	0.31	-1.0
2,934,664	+		PFLU_RS13000	0.31	+0.8
2,934,664	+		PFLU_RS13000	0.31	+0.1
2,934,664	+		PFLU_RS13000	0.31	-1.8
2,934,664	+		PFLU_RS13000	0.31	-1.9
2,934,664	+		PFLU_RS13000	0.31	-0.4
2,934,664	+		PFLU_RS13000	0.31	+0.0
2,934,665	-		PFLU_RS13000	0.31	-1.9
2,934,665	-		PFLU_RS13000	0.31	-2.4
2,934,665	-		PFLU_RS13000	0.31	-1.1
2,934,665	-		PFLU_RS13000	0.31	-2.1
2,934,665	-		PFLU_RS13000	0.31	-0.4
2,934,665	-		PFLU_RS13000	0.31	-1.4
2,934,665	-		PFLU_RS13000	0.31	-1.2
2,934,665	-		PFLU_RS13000	0.31	-1.2
2,934,685	+		PFLU_RS13000	0.31	-1.8
2,934,685	+		PFLU_RS13000	0.31	-1.9
2,934,686	-		PFLU_RS13000	0.31	-0.5
2,934,686	-		PFLU_RS13000	0.31	-1.8
2,934,686	-		PFLU_RS13000	0.31	-0.3
2,934,813	-		PFLU_RS13000	0.35	-1.2
2,934,910	+		PFLU_RS13000	0.37	-1.4
2,935,318	+		PFLU_RS13000	0.48	-1.5
2,935,318	+		PFLU_RS13000	0.48	+0.7
2,935,318	+		PFLU_RS13000	0.48	-2.6
2,935,318	+		PFLU_RS13000	0.48	-0.8
2,935,318	+		PFLU_RS13000	0.48	+0.3
2,935,319	-		PFLU_RS13000	0.48	+0.0
2,935,319	-		PFLU_RS13000	0.48	-0.9
2,935,319	-		PFLU_RS13000	0.48	-1.0
2,935,319	-		PFLU_RS13000	0.48	-0.3
2,935,319	-		PFLU_RS13000	0.48	-2.9
2,935,417	+		PFLU_RS13000	0.51	-0.2
2,935,417	+		PFLU_RS13000	0.51	+0.0
2,935,417	+		PFLU_RS13000	0.51	-1.5
2,935,418	-		PFLU_RS13000	0.51	-1.0
2,935,418	-		PFLU_RS13000	0.51	+0.4
2,935,418	-		PFLU_RS13000	0.51	-1.6
2,935,474	+		PFLU_RS13000	0.52	-0.3
2,935,474	+		PFLU_RS13000	0.52	-0.6
2,935,474	+		PFLU_RS13000	0.52	-0.6
2,935,586	+		PFLU_RS13000	0.55	-0.9
2,935,586	+		PFLU_RS13000	0.55	-1.5
2,935,586	+		PFLU_RS13000	0.55	-1.3
2,935,586	+		PFLU_RS13000	0.55	-1.6
2,935,587	-		PFLU_RS13000	0.55	+0.7
2,935,587	-		PFLU_RS13000	0.55	-2.3
2,935,587	-		PFLU_RS13000	0.55	-1.8
2,935,588	+		PFLU_RS13000	0.55	-1.3
2,935,588	+		PFLU_RS13000	0.55	-0.1
2,935,588	+		PFLU_RS13000	0.55	-1.8
2,935,588	+		PFLU_RS13000	0.55	-2.4
2,935,588	+		PFLU_RS13000	0.55	-0.3
2,935,588	+		PFLU_RS13000	0.55	-0.5
2,935,588	+		PFLU_RS13000	0.55	-2.2
2,935,588	+		PFLU_RS13000	0.55	-0.1
2,935,589	-		PFLU_RS13000	0.56	-0.1
2,935,589	-		PFLU_RS13000	0.56	-1.6
2,935,589	-		PFLU_RS13000	0.56	-1.9
2,935,589	-		PFLU_RS13000	0.56	-0.2
2,935,618	+		PFLU_RS13000	0.56	-0.1
2,935,618	+		PFLU_RS13000	0.56	-0.9
2,935,618	+		PFLU_RS13000	0.56	-0.9
2,935,618	+		PFLU_RS13000	0.56	+1.2
2,935,618	+		PFLU_RS13000	0.56	-1.6
2,935,618	+		PFLU_RS13000	0.56	-0.5
2,935,619	-		PFLU_RS13000	0.56	-1.1
2,935,619	-		PFLU_RS13000	0.56	-0.7
2,935,619	-		PFLU_RS13000	0.56	-0.6
2,935,619	-		PFLU_RS13000	0.56	-2.9
2,935,717	+		PFLU_RS13000	0.59	-1.1
2,935,717	+		PFLU_RS13000	0.59	-1.3
2,935,717	+		PFLU_RS13000	0.59	-0.9
2,935,718	-		PFLU_RS13000	0.59	-0.4
2,935,718	-		PFLU_RS13000	0.59	-0.6
2,935,718	-		PFLU_RS13000	0.59	-0.5
2,935,718	-		PFLU_RS13000	0.59	-1.5
2,936,092	+		PFLU_RS13000	0.69	-1.8
2,936,092	+		PFLU_RS13000	0.69	-0.6
2,936,092	+		PFLU_RS13000	0.69	+1.0
2,936,092	+		PFLU_RS13000	0.69	-1.3
2,936,092	+		PFLU_RS13000	0.69	-1.0
2,936,092	+		PFLU_RS13000	0.69	-0.7
2,936,092	+		PFLU_RS13000	0.69	-0.9
2,936,092	+		PFLU_RS13000	0.69	-2.6
2,936,092	+		PFLU_RS13000	0.69	-0.3
2,936,092	+		PFLU_RS13000	0.69	-1.5
2,936,092	+		PFLU_RS13000	0.69	-2.4
2,936,092	+		PFLU_RS13000	0.69	+0.1
2,936,092	+		PFLU_RS13000	0.69	+0.3
2,936,093	-		PFLU_RS13000	0.69	+1.1
2,936,093	-		PFLU_RS13000	0.69	-1.5
2,936,093	-		PFLU_RS13000	0.69	-0.1
2,936,139	-		PFLU_RS13000	0.70	-0.8
2,936,145	-		PFLU_RS13000	0.70	-1.8
2,936,380	+		PFLU_RS13000	0.77	-0.9
2,936,381	-		PFLU_RS13000	0.77	-1.5
2,936,461	+		PFLU_RS13000	0.79	+0.4
2,936,619	-		PFLU_RS13000	0.83	-0.6
2,936,744	-		PFLU_RS13000	0.87	+0.0
2,936,916	+				-0.1
2,936,916	+				-0.5
2,936,916	+				-0.1
2,936,916	+				-1.0
2,936,916	+				-1.1
2,936,916	+				-0.3
2,936,916	+				-1.1
2,936,916	+				-0.7
2,936,916	+				+0.3
2,936,916	+				-0.5
2,936,916	+				-2.2
2,936,916	+				-2.9
2,936,916	+				-2.2
2,936,916	+				-1.0
2,936,917	-				-0.4
2,936,917	-				-0.3
2,936,917	-				-0.5
2,936,917	-				-1.9
2,936,917	-				-2.4
2,936,917	-				-0.7
2,936,917	-				-0.9
2,936,917	-				-0.2
2,936,929	+				-2.9
2,936,951	-				-3.3
2,937,142	+				-2.7
2,937,142	+				-2.1
2,937,142	+				-2.8
2,937,142	+				-0.8
2,937,142	+				-1.6
2,937,143	-				-0.7
2,937,143	-				-1.3
2,937,143	-				-0.8
2,937,185	+				-2.3
2,937,185	+				+0.5
2,937,185	+				-1.2
2,937,185	+				-1.0
2,937,185	+				+0.5
2,937,185	+				-0.4
2,937,186	-				-1.5
2,937,186	-				-1.6
2,937,227	+				-0.1
2,937,227	+				-1.3
2,937,228	-				-0.7
2,937,245	+				-1.5
2,937,245	+				-0.7
2,937,245	+				-0.6
2,937,246	-				+0.3
2,937,246	-				-0.3
2,937,246	-				-1.4
2,937,246	-				-0.5
2,937,279	+				-1.3
2,937,279	+				-0.8
2,937,279	+				-0.6
2,937,325	-				-0.5
2,937,402	+				+0.6
2,937,402	+				-0.3
2,937,402	+				-0.4
2,937,402	+				+0.5
2,937,402	+				-0.3
2,937,402	+				+0.2
2,937,402	+				+0.3
2,937,403	-				-0.5
2,937,403	-				-0.2
2,937,403	-				+1.6
2,937,403	-				-0.1
2,937,403	-				-0.3
2,937,403	-				-0.9
2,937,422	+				-1.1
2,937,423	-				-0.6
2,937,423	-				-0.4
2,937,423	-				+0.6
2,937,489	+				+0.1
2,937,489	+				-0.5
2,937,490	-				+0.1
2,937,490	-				+0.9
2,937,546	+				-1.1
2,937,546	+				+0.9
2,937,547	-				+0.1
2,937,618	+				+0.8
2,937,618	+				+0.1
2,937,619	-				-0.1
2,937,619	-				-0.9
2,937,619	-				+1.5
2,937,663	+		PFLU_RS13005	0.11	-0.4
2,937,663	+		PFLU_RS13005	0.11	+0.2
2,937,663	+		PFLU_RS13005	0.11	+0.0
2,937,664	-		PFLU_RS13005	0.11	+0.3
2,937,664	-		PFLU_RS13005	0.11	-2.3
2,937,664	-		PFLU_RS13005	0.11	-1.6
2,937,664	-		PFLU_RS13005	0.11	-0.1
2,937,664	-		PFLU_RS13005	0.11	+0.9
2,937,664	-		PFLU_RS13005	0.11	-0.6
2,937,664	-		PFLU_RS13005	0.11	+0.6
2,937,664	-		PFLU_RS13005	0.11	+0.8
2,937,664	-		PFLU_RS13005	0.11	+0.4
2,937,705	+		PFLU_RS13005	0.13	+0.1
2,937,706	-		PFLU_RS13005	0.13	+0.3
2,937,706	-		PFLU_RS13005	0.13	-0.1
2,937,706	-		PFLU_RS13005	0.13	-0.6
2,937,706	-		PFLU_RS13005	0.13	-1.2
2,937,706	-		PFLU_RS13005	0.13	-2.2
2,937,930	+		PFLU_RS13005	0.23	+1.3
2,937,930	+		PFLU_RS13005	0.23	+0.5
2,937,930	+		PFLU_RS13005	0.23	+1.3
2,938,103	+		PFLU_RS13005	0.30	+0.8
2,938,103	+		PFLU_RS13005	0.30	+0.7
2,938,103	+		PFLU_RS13005	0.30	+0.9
2,938,103	+		PFLU_RS13005	0.30	+0.0
2,938,103	+		PFLU_RS13005	0.30	+0.5
2,938,104	-		PFLU_RS13005	0.30	-0.5
2,938,104	-		PFLU_RS13005	0.30	-0.9
2,938,104	-		PFLU_RS13005	0.30	+0.4
2,938,107	+		PFLU_RS13005	0.31	-0.2
2,938,107	+		PFLU_RS13005	0.31	+0.0
2,938,107	+		PFLU_RS13005	0.31	+0.2
2,938,107	+		PFLU_RS13005	0.31	+0.5
2,938,107	+		PFLU_RS13005	0.31	+0.5
2,938,107	+		PFLU_RS13005	0.31	-0.7
2,938,108	-		PFLU_RS13005	0.31	-0.1
2,938,108	-		PFLU_RS13005	0.31	+0.0
2,938,108	-		PFLU_RS13005	0.31	-1.0
2,938,108	-		PFLU_RS13005	0.31	-0.0
2,938,108	-		PFLU_RS13005	0.31	-0.5
2,938,108	-		PFLU_RS13005	0.31	+0.8
2,938,108	-		PFLU_RS13005	0.31	-0.2
2,938,108	-		PFLU_RS13005	0.31	-0.3
2,938,108	-		PFLU_RS13005	0.31	+0.9
2,938,227	+		PFLU_RS13005	0.36	-0.6
2,938,227	+		PFLU_RS13005	0.36	+0.1
2,938,227	+		PFLU_RS13005	0.36	+0.1
2,938,227	+		PFLU_RS13005	0.36	+0.1
2,938,228	-		PFLU_RS13005	0.36	+0.3
2,938,228	-		PFLU_RS13005	0.36	+0.1
2,938,228	-		PFLU_RS13005	0.36	+0.0
2,938,228	-		PFLU_RS13005	0.36	+0.0
2,938,231	-		PFLU_RS13005	0.36	+0.1