Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4264
Experiment: Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.2 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.2 vol% |
---|---|---|---|---|---|
remove | |||||
5,614,980 | - | -0.5 | |||
5,615,098 | - | -0.4 | |||
5,615,184 | + | BT4264 | 0.29 | -1.3 | |
5,615,184 | + | BT4264 | 0.29 | +0.3 | |
5,615,185 | - | BT4264 | 0.29 | -2.0 | |
5,615,185 | - | BT4264 | 0.29 | +0.1 | |
5,615,185 | - | BT4264 | 0.29 | +0.5 | |
5,615,185 | - | BT4264 | 0.29 | -0.9 | |
5,615,205 | - | BT4264 | 0.33 | +0.8 | |
5,615,294 | + | BT4264 | 0.53 | -0.6 | |
5,615,295 | - | BT4264 | 0.53 | +1.0 | |
5,615,306 | - | BT4264 | 0.56 | +0.7 | |
5,615,346 | - | BT4264 | 0.65 | +0.0 | |
5,615,364 | - | BT4264 | 0.69 | -1.0 | |
5,615,364 | - | BT4264 | 0.69 | -0.7 | |
5,615,364 | - | BT4264 | 0.69 | -1.0 | |
5,615,364 | - | BT4264 | 0.69 | -0.5 | |
5,615,370 | - | BT4264 | 0.70 | -2.0 | |
5,615,448 | + | BT4264 | 0.88 | -0.7 | |
5,615,510 | + | +0.4 | |||
5,615,511 | - | -0.1 | |||
5,615,543 | + | -0.6 | |||
5,615,543 | + | -3.7 | |||
5,615,543 | + | -2.3 | |||
5,615,551 | - | -1.0 | |||
5,615,609 | - | -2.3 | |||
5,615,930 | - | BT4265 | 0.15 | +0.0 | |
5,616,340 | - | BT4265 | 0.41 | +1.4 |
Or see this region's nucleotide sequence