Experiment: Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0733 and BT0734 are separated by 268 nucleotides BT0734 and BT0735 are separated by 6 nucleotides
BT0733: BT0733 - two-component system sensor histidine kinase (NCBI ptt file), at 906,714 to 908,093
BT0733
BT0734: BT0734 - conserved hypothetical protein (NCBI ptt file), at 908,362 to 910,470
BT0734
BT0735: BT0735 - aspartate decarboxylase AsdA (NCBI ptt file), at 910,477 to 912,150
BT0735
Position (kb) 908
909
910
911 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 907.590 kb on - strand, within BT0733 at 907.619 kb on + strand, within BT0733 at 907.619 kb on + strand, within BT0733 at 907.624 kb on - strand, within BT0733 at 907.624 kb on - strand, within BT0733 at 907.665 kb on - strand, within BT0733 at 907.665 kb on - strand, within BT0733 at 907.665 kb on - strand, within BT0733 at 907.666 kb on + strand, within BT0733 at 907.668 kb on + strand, within BT0733 at 907.689 kb on + strand, within BT0733 at 907.776 kb on - strand, within BT0733 at 907.944 kb on - strand, within BT0733 at 908.105 kb on + strand at 908.240 kb on + strand at 908.240 kb on + strand at 908.282 kb on + strand at 908.293 kb on - strand at 908.390 kb on + strand at 908.410 kb on + strand at 908.468 kb on + strand at 908.473 kb on + strand at 908.473 kb on + strand at 908.473 kb on + strand at 908.475 kb on + strand at 908.559 kb on - strand at 908.560 kb on + strand at 908.605 kb on + strand, within BT0734 at 908.605 kb on + strand, within BT0734 at 908.829 kb on - strand, within BT0734 at 908.873 kb on + strand, within BT0734 at 908.874 kb on - strand, within BT0734 at 908.977 kb on + strand, within BT0734 at 909.052 kb on - strand, within BT0734 at 909.056 kb on - strand, within BT0734 at 909.109 kb on + strand, within BT0734 at 909.109 kb on + strand, within BT0734 at 909.295 kb on + strand, within BT0734 at 909.295 kb on + strand, within BT0734 at 909.397 kb on + strand, within BT0734 at 909.414 kb on + strand, within BT0734 at 909.415 kb on - strand, within BT0734 at 909.454 kb on + strand, within BT0734 at 909.706 kb on - strand, within BT0734 at 909.775 kb on + strand, within BT0734 at 909.776 kb on - strand, within BT0734 at 909.847 kb on - strand, within BT0734 at 909.864 kb on + strand, within BT0734 at 909.886 kb on + strand, within BT0734 at 909.952 kb on + strand, within BT0734 at 909.954 kb on + strand, within BT0734 at 909.955 kb on - strand, within BT0734 at 910.001 kb on + strand, within BT0734 at 910.002 kb on - strand, within BT0734 at 910.109 kb on + strand, within BT0734 at 910.138 kb on - strand, within BT0734 at 910.206 kb on - strand, within BT0734 at 910.332 kb on + strand at 910.369 kb on + strand at 910.396 kb on - strand at 910.471 kb on + strand at 910.494 kb on - strand at 910.516 kb on - strand at 910.516 kb on - strand at 910.715 kb on - strand, within BT0735 at 910.737 kb on - strand, within BT0735 at 910.762 kb on + strand, within BT0735 at 910.959 kb on + strand, within BT0735 at 911.078 kb on - strand, within BT0735 at 911.140 kb on - strand, within BT0735
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.2 vol% remove 907,590 - BT0733 0.63 -0.4 907,619 + BT0733 0.66 -1.8 907,619 + BT0733 0.66 -0.4 907,624 - BT0733 0.66 +0.0 907,624 - BT0733 0.66 -1.6 907,665 - BT0733 0.69 -2.6 907,665 - BT0733 0.69 +0.0 907,665 - BT0733 0.69 -1.0 907,666 + BT0733 0.69 +1.0 907,668 + BT0733 0.69 -3.3 907,689 + BT0733 0.71 -2.4 907,776 - BT0733 0.77 -1.0 907,944 - BT0733 0.89 +2.0 908,105 + +0.0 908,240 + -1.6 908,240 + -0.6 908,282 + -1.6 908,293 - -2.3 908,390 + +0.0 908,410 + -2.0 908,468 + -0.9 908,473 + -2.0 908,473 + -2.8 908,473 + -1.6 908,475 + -1.0 908,559 - +1.0 908,560 + +0.6 908,605 + BT0734 0.12 -1.0 908,605 + BT0734 0.12 -1.0 908,829 - BT0734 0.22 +0.0 908,873 + BT0734 0.24 +1.0 908,874 - BT0734 0.24 +0.0 908,977 + BT0734 0.29 +0.0 909,052 - BT0734 0.33 +1.0 909,056 - BT0734 0.33 -1.0 909,109 + BT0734 0.35 +1.0 909,109 + BT0734 0.35 +0.0 909,295 + BT0734 0.44 -1.6 909,295 + BT0734 0.44 -0.7 909,397 + BT0734 0.49 -1.0 909,414 + BT0734 0.50 -2.0 909,415 - BT0734 0.50 -2.0 909,454 + BT0734 0.52 -1.6 909,706 - BT0734 0.64 +0.4 909,775 + BT0734 0.67 -1.3 909,776 - BT0734 0.67 -1.6 909,847 - BT0734 0.70 -2.3 909,864 + BT0734 0.71 -2.2 909,886 + BT0734 0.72 -2.0 909,952 + BT0734 0.75 -1.1 909,954 + BT0734 0.75 -1.6 909,955 - BT0734 0.76 +1.0 910,001 + BT0734 0.78 +1.6 910,002 - BT0734 0.78 +1.0 910,109 + BT0734 0.83 -0.6 910,138 - BT0734 0.84 +2.0 910,206 - BT0734 0.87 -3.7 910,332 + -3.7 910,369 + -0.4 910,396 - -0.6 910,471 + -1.6 910,494 - +0.0 910,516 - -1.7 910,516 - -1.0 910,715 - BT0735 0.14 +0.0 910,737 - BT0735 0.16 -2.0 910,762 + BT0735 0.17 +0.0 910,959 + BT0735 0.29 -1.0 911,078 - BT0735 0.36 +0.0 911,140 - BT0735 0.40 -3.0
Or see this region's nucleotide sequence