Experiment: Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0729 and BT0730 are separated by 248 nucleotides BT0730 and BT0731 are separated by 150 nucleotides BT0731 and BT0732 are separated by 202 nucleotides
BT0729: BT0729 - transcriptional regulator (NCBI ptt file), at 902,949 to 903,851
BT0729
BT0730: BT0730 - putative mRNA-binding protein (NCBI ptt file), at 904,100 to 905,116
BT0730
BT0731: BT0731 - hypothetical protein (NCBI ptt file), at 905,267 to 905,803
BT0731
BT0732: BT0732 - two-component system response regulator (NCBI ptt file), at 906,006 to 906,701
BT0732
Position (kb) 904
905
906 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 903.115 kb on + strand, within BT0729 at 903.345 kb on + strand, within BT0729 at 903.345 kb on + strand, within BT0729 at 903.482 kb on - strand, within BT0729 at 903.549 kb on + strand, within BT0729 at 903.653 kb on - strand, within BT0729 at 903.709 kb on + strand, within BT0729 at 903.726 kb on - strand, within BT0729 at 903.815 kb on - strand at 903.891 kb on + strand at 903.892 kb on - strand at 903.892 kb on - strand at 903.897 kb on + strand at 903.938 kb on + strand at 904.110 kb on + strand at 904.229 kb on - strand, within BT0730 at 904.419 kb on - strand, within BT0730 at 904.422 kb on + strand, within BT0730 at 904.552 kb on + strand, within BT0730 at 904.595 kb on - strand, within BT0730 at 904.616 kb on - strand, within BT0730 at 904.622 kb on - strand, within BT0730 at 904.706 kb on + strand, within BT0730 at 904.707 kb on - strand, within BT0730 at 904.960 kb on + strand, within BT0730 at 905.006 kb on + strand, within BT0730 at 905.007 kb on - strand, within BT0730 at 905.114 kb on + strand at 905.133 kb on + strand at 905.166 kb on + strand at 905.170 kb on - strand at 905.170 kb on - strand at 905.184 kb on - strand at 905.190 kb on + strand at 905.209 kb on - strand at 905.225 kb on - strand at 905.225 kb on - strand at 905.225 kb on - strand at 905.229 kb on + strand at 905.230 kb on - strand at 905.230 kb on - strand at 905.252 kb on + strand at 905.260 kb on - strand at 905.421 kb on + strand, within BT0731 at 905.558 kb on - strand, within BT0731 at 905.698 kb on + strand, within BT0731 at 905.699 kb on - strand, within BT0731 at 905.722 kb on + strand, within BT0731 at 905.786 kb on + strand at 905.787 kb on - strand at 905.943 kb on - strand at 905.973 kb on + strand at 906.007 kb on + strand at 906.055 kb on - strand at 906.055 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.2 vol% remove 903,115 + BT0729 0.18 -0.5 903,345 + BT0729 0.44 -1.7 903,345 + BT0729 0.44 -1.0 903,482 - BT0729 0.59 -1.4 903,549 + BT0729 0.66 +1.6 903,653 - BT0729 0.78 +0.0 903,709 + BT0729 0.84 -1.0 903,726 - BT0729 0.86 +1.3 903,815 - -1.0 903,891 + +0.6 903,892 - +0.0 903,892 - +1.0 903,897 + +0.0 903,938 + -0.7 904,110 + -1.0 904,229 - BT0730 0.13 +1.0 904,419 - BT0730 0.31 +0.8 904,422 + BT0730 0.32 -1.3 904,552 + BT0730 0.44 -0.8 904,595 - BT0730 0.49 +0.0 904,616 - BT0730 0.51 +0.4 904,622 - BT0730 0.51 -0.4 904,706 + BT0730 0.60 -0.7 904,707 - BT0730 0.60 +0.0 904,960 + BT0730 0.85 +0.0 905,006 + BT0730 0.89 +0.0 905,007 - BT0730 0.89 +0.3 905,114 + +0.6 905,133 + +1.6 905,166 + -3.6 905,170 - +1.0 905,170 - +0.2 905,184 - +0.0 905,190 + +0.5 905,209 - -0.6 905,225 - -0.3 905,225 - -0.3 905,225 - +2.0 905,229 + +0.8 905,230 - -1.6 905,230 - +0.6 905,252 + -1.6 905,260 - -1.0 905,421 + BT0731 0.29 -1.6 905,558 - BT0731 0.54 -1.6 905,698 + BT0731 0.80 -1.1 905,699 - BT0731 0.80 +0.2 905,722 + BT0731 0.85 +0.0 905,786 + +0.8 905,787 - -2.0 905,943 - -1.0 905,973 + +0.6 906,007 + +0.0 906,055 - -0.6 906,055 - +0.0
Or see this region's nucleotide sequence