Experiment: Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0511 and BT0512 are separated by 38 nucleotides BT0512 and BT0513 are separated by 44 nucleotides BT0513 and BT0514 are separated by 57 nucleotides
BT0511: BT0511 - hypothetical protein (NCBI ptt file), at 634,879 to 635,331
BT0511
BT0512: BT0512 - hypothetical protein (NCBI ptt file), at 635,370 to 635,939
BT0512
BT0513: BT0513 - hypothetical protein (NCBI ptt file), at 635,984 to 636,415
BT0513
BT0514: BT0514 - conserved hypothetical protein (NCBI ptt file), at 636,473 to 637,477
BT0514
Position (kb) 635
636
637 Strain fitness (log2 ratio) -2
-1
0
1
2 at 635.049 kb on + strand, within BT0511 at 635.060 kb on - strand, within BT0511 at 635.060 kb on - strand, within BT0511 at 635.074 kb on - strand, within BT0511 at 635.075 kb on + strand, within BT0511 at 635.076 kb on - strand, within BT0511 at 635.083 kb on + strand, within BT0511 at 635.206 kb on + strand, within BT0511 at 635.241 kb on - strand, within BT0511 at 635.338 kb on - strand at 635.368 kb on - strand at 635.524 kb on - strand, within BT0512 at 635.534 kb on + strand, within BT0512 at 635.534 kb on + strand, within BT0512 at 635.536 kb on + strand, within BT0512 at 635.597 kb on - strand, within BT0512 at 635.597 kb on - strand, within BT0512 at 635.607 kb on - strand, within BT0512 at 635.615 kb on + strand, within BT0512 at 635.763 kb on - strand, within BT0512 at 635.840 kb on + strand, within BT0512 at 635.854 kb on - strand, within BT0512 at 635.854 kb on - strand, within BT0512 at 635.939 kb on + strand at 635.943 kb on + strand at 636.008 kb on + strand at 636.093 kb on - strand, within BT0513 at 636.269 kb on + strand, within BT0513 at 636.274 kb on + strand, within BT0513 at 636.275 kb on - strand, within BT0513 at 636.280 kb on - strand, within BT0513 at 636.333 kb on - strand, within BT0513 at 636.344 kb on + strand, within BT0513 at 636.403 kb on + strand at 636.403 kb on + strand at 636.526 kb on + strand at 636.569 kb on - strand at 636.610 kb on - strand, within BT0514 at 636.738 kb on + strand, within BT0514 at 636.777 kb on - strand, within BT0514 at 636.835 kb on - strand, within BT0514 at 636.865 kb on - strand, within BT0514 at 636.909 kb on + strand, within BT0514 at 636.935 kb on + strand, within BT0514 at 636.962 kb on - strand, within BT0514 at 637.007 kb on - strand, within BT0514 at 637.062 kb on - strand, within BT0514 at 637.071 kb on - strand, within BT0514 at 637.071 kb on - strand, within BT0514 at 637.089 kb on + strand, within BT0514 at 637.090 kb on - strand, within BT0514 at 637.301 kb on + strand, within BT0514 at 637.302 kb on - strand, within BT0514 at 637.349 kb on + strand at 637.373 kb on - strand, within BT0514
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.2 vol% remove 635,049 + BT0511 0.38 +2.3 635,060 - BT0511 0.40 -1.0 635,060 - BT0511 0.40 -0.6 635,074 - BT0511 0.43 -0.6 635,075 + BT0511 0.43 +1.0 635,076 - BT0511 0.43 -1.0 635,083 + BT0511 0.45 +0.1 635,206 + BT0511 0.72 +0.6 635,241 - BT0511 0.80 +0.0 635,338 - -1.6 635,368 - -1.0 635,524 - BT0512 0.27 +0.0 635,534 + BT0512 0.29 -2.3 635,534 + BT0512 0.29 -0.1 635,536 + BT0512 0.29 +0.0 635,597 - BT0512 0.40 +0.0 635,597 - BT0512 0.40 -1.4 635,607 - BT0512 0.42 -1.1 635,615 + BT0512 0.43 +1.6 635,763 - BT0512 0.69 -0.4 635,840 + BT0512 0.82 +1.6 635,854 - BT0512 0.85 +0.0 635,854 - BT0512 0.85 +0.3 635,939 + +1.0 635,943 + +0.8 636,008 + -0.9 636,093 - BT0513 0.25 +0.0 636,269 + BT0513 0.66 +0.0 636,274 + BT0513 0.67 +1.0 636,275 - BT0513 0.67 +0.0 636,280 - BT0513 0.69 +0.4 636,333 - BT0513 0.81 -1.8 636,344 + BT0513 0.83 +0.0 636,403 + +0.4 636,403 + -1.0 636,526 + -0.2 636,569 - -2.2 636,610 - BT0514 0.14 +1.6 636,738 + BT0514 0.26 -1.0 636,777 - BT0514 0.30 +0.0 636,835 - BT0514 0.36 +1.0 636,865 - BT0514 0.39 -1.0 636,909 + BT0514 0.43 -1.3 636,935 + BT0514 0.46 -1.0 636,962 - BT0514 0.49 +0.3 637,007 - BT0514 0.53 +1.0 637,062 - BT0514 0.59 +0.0 637,071 - BT0514 0.60 +0.0 637,071 - BT0514 0.60 -2.3 637,089 + BT0514 0.61 +0.0 637,090 - BT0514 0.61 +0.5 637,301 + BT0514 0.82 -1.0 637,302 - BT0514 0.82 -1.6 637,349 + +1.0 637,373 - BT0514 0.90 +2.3
Or see this region's nucleotide sequence