Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004429

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_004428 and ABIE53_004429 are separated by 367 nucleotidesABIE53_004429 and ABIE53_004430 are separated by 207 nucleotides ABIE53_004428: ABIE53_004428 - methyl-accepting chemotaxis protein, at 617,343 to 618,980 _004428 ABIE53_004429: ABIE53_004429 - hypothetical protein, at 619,348 to 620,025 _004429 ABIE53_004430: ABIE53_004430 - EmrB/QacA subfamily drug resistance transporter, at 620,233 to 621,795 _004430 Position (kb) 619 620 621Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 618.412 kb on + strand, within ABIE53_004428at 618.412 kb on + strand, within ABIE53_004428at 618.412 kb on + strand, within ABIE53_004428at 618.412 kb on + strand, within ABIE53_004428at 618.412 kb on + strand, within ABIE53_004428at 618.413 kb on - strand, within ABIE53_004428at 618.413 kb on - strand, within ABIE53_004428at 618.441 kb on - strand, within ABIE53_004428at 618.451 kb on + strand, within ABIE53_004428at 618.451 kb on + strand, within ABIE53_004428at 618.451 kb on + strand, within ABIE53_004428at 618.451 kb on + strand, within ABIE53_004428at 618.451 kb on + strand, within ABIE53_004428at 618.452 kb on - strand, within ABIE53_004428at 618.452 kb on - strand, within ABIE53_004428at 618.553 kb on + strand, within ABIE53_004428at 618.553 kb on + strand, within ABIE53_004428at 618.553 kb on + strand, within ABIE53_004428at 618.554 kb on - strand, within ABIE53_004428at 618.554 kb on - strand, within ABIE53_004428at 618.604 kb on + strand, within ABIE53_004428at 618.604 kb on + strand, within ABIE53_004428at 618.604 kb on + strand, within ABIE53_004428at 618.604 kb on + strand, within ABIE53_004428at 618.604 kb on + strand, within ABIE53_004428at 618.604 kb on + strand, within ABIE53_004428at 618.604 kb on + strand, within ABIE53_004428at 618.605 kb on - strand, within ABIE53_004428at 618.605 kb on - strand, within ABIE53_004428at 618.605 kb on - strand, within ABIE53_004428at 618.605 kb on - strand, within ABIE53_004428at 618.605 kb on - strand, within ABIE53_004428at 618.605 kb on - strand, within ABIE53_004428at 618.712 kb on + strand, within ABIE53_004428at 618.712 kb on + strand, within ABIE53_004428at 618.808 kb on + strand, within ABIE53_004428at 618.809 kb on - strand, within ABIE53_004428at 618.809 kb on - strand, within ABIE53_004428at 619.112 kb on + strandat 619.112 kb on + strandat 619.112 kb on + strandat 619.209 kb on + strandat 619.209 kb on + strandat 619.209 kb on + strandat 619.210 kb on - strandat 619.210 kb on - strandat 619.233 kb on + strandat 619.234 kb on - strandat 619.234 kb on - strandat 619.317 kb on + strandat 619.333 kb on + strandat 619.375 kb on - strandat 619.453 kb on - strand, within ABIE53_004429at 619.469 kb on - strand, within ABIE53_004429at 619.502 kb on - strand, within ABIE53_004429at 619.514 kb on - strand, within ABIE53_004429at 619.514 kb on - strand, within ABIE53_004429at 619.514 kb on - strand, within ABIE53_004429at 619.623 kb on + strand, within ABIE53_004429at 619.623 kb on + strand, within ABIE53_004429at 619.630 kb on + strand, within ABIE53_004429at 619.631 kb on - strand, within ABIE53_004429at 619.663 kb on + strand, within ABIE53_004429at 619.663 kb on + strand, within ABIE53_004429at 619.663 kb on + strand, within ABIE53_004429at 619.664 kb on - strand, within ABIE53_004429at 619.697 kb on + strand, within ABIE53_004429at 619.697 kb on + strand, within ABIE53_004429at 619.698 kb on - strand, within ABIE53_004429at 619.698 kb on - strand, within ABIE53_004429at 619.768 kb on + strand, within ABIE53_004429at 619.768 kb on + strand, within ABIE53_004429at 619.769 kb on - strand, within ABIE53_004429at 619.884 kb on + strand, within ABIE53_004429at 619.885 kb on - strand, within ABIE53_004429at 620.023 kb on + strandat 620.024 kb on - strandat 620.115 kb on + strandat 620.116 kb on - strandat 620.116 kb on - strandat 620.116 kb on - strandat 620.126 kb on - strandat 620.140 kb on - strandat 620.140 kb on - strandat 620.140 kb on - strandat 620.140 kb on - strandat 620.140 kb on - strandat 620.141 kb on + strandat 620.141 kb on + strandat 620.142 kb on - strandat 620.238 kb on + strandat 620.238 kb on + strandat 620.238 kb on + strandat 620.239 kb on - strandat 620.239 kb on - strandat 620.239 kb on - strandat 620.386 kb on + strandat 620.386 kb on + strandat 620.387 kb on - strandat 620.389 kb on + strandat 620.389 kb on + strandat 620.389 kb on + strandat 620.389 kb on + strandat 620.390 kb on - strand, within ABIE53_004430at 620.390 kb on - strand, within ABIE53_004430at 620.390 kb on - strand, within ABIE53_004430at 620.390 kb on - strand, within ABIE53_004430at 620.410 kb on + strand, within ABIE53_004430at 620.461 kb on + strand, within ABIE53_004430at 620.462 kb on - strand, within ABIE53_004430at 620.680 kb on + strand, within ABIE53_004430at 620.681 kb on - strand, within ABIE53_004430at 620.789 kb on - strand, within ABIE53_004430at 620.901 kb on + strand, within ABIE53_004430at 620.902 kb on - strand, within ABIE53_004430

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
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618,412 + ABIE53_004428 0.65 -0.0
618,412 + ABIE53_004428 0.65 +0.4
618,412 + ABIE53_004428 0.65 -0.3
618,412 + ABIE53_004428 0.65 +3.6
618,412 + ABIE53_004428 0.65 -2.2
618,413 - ABIE53_004428 0.65 +0.8
618,413 - ABIE53_004428 0.65 -0.7
618,441 - ABIE53_004428 0.67 -0.7
618,451 + ABIE53_004428 0.68 +0.8
618,451 + ABIE53_004428 0.68 +0.5
618,451 + ABIE53_004428 0.68 -0.6
618,451 + ABIE53_004428 0.68 +0.1
618,451 + ABIE53_004428 0.68 -2.6
618,452 - ABIE53_004428 0.68 +2.0
618,452 - ABIE53_004428 0.68 +0.1
618,553 + ABIE53_004428 0.74 -3.3
618,553 + ABIE53_004428 0.74 +1.4
618,553 + ABIE53_004428 0.74 +0.1
618,554 - ABIE53_004428 0.74 -1.0
618,554 - ABIE53_004428 0.74 -0.6
618,604 + ABIE53_004428 0.77 -0.9
618,604 + ABIE53_004428 0.77 -1.9
618,604 + ABIE53_004428 0.77 -1.8
618,604 + ABIE53_004428 0.77 -1.2
618,604 + ABIE53_004428 0.77 +0.4
618,604 + ABIE53_004428 0.77 +1.0
618,604 + ABIE53_004428 0.77 +0.4
618,605 - ABIE53_004428 0.77 +0.9
618,605 - ABIE53_004428 0.77 -1.4
618,605 - ABIE53_004428 0.77 -1.2
618,605 - ABIE53_004428 0.77 -0.2
618,605 - ABIE53_004428 0.77 -0.2
618,605 - ABIE53_004428 0.77 +0.1
618,712 + ABIE53_004428 0.84 -1.2
618,712 + ABIE53_004428 0.84 +1.0
618,808 + ABIE53_004428 0.89 -0.5
618,809 - ABIE53_004428 0.89 +0.1
618,809 - ABIE53_004428 0.89 +0.3
619,112 + -0.3
619,112 + +0.8
619,112 + -1.0
619,209 + +0.1
619,209 + -0.0
619,209 + -1.3
619,210 - -1.7
619,210 - -0.5
619,233 + -0.6
619,234 - +0.9
619,234 - -1.5
619,317 + -2.7
619,333 + +2.4
619,375 - -1.2
619,453 - ABIE53_004429 0.15 -1.2
619,469 - ABIE53_004429 0.18 -1.5
619,502 - ABIE53_004429 0.23 -2.2
619,514 - ABIE53_004429 0.24 +1.1
619,514 - ABIE53_004429 0.24 -0.6
619,514 - ABIE53_004429 0.24 +0.6
619,623 + ABIE53_004429 0.41 -1.0
619,623 + ABIE53_004429 0.41 -1.3
619,630 + ABIE53_004429 0.42 -0.2
619,631 - ABIE53_004429 0.42 -2.2
619,663 + ABIE53_004429 0.46 +0.2
619,663 + ABIE53_004429 0.46 -0.4
619,663 + ABIE53_004429 0.46 -1.4
619,664 - ABIE53_004429 0.47 -1.6
619,697 + ABIE53_004429 0.51 -0.6
619,697 + ABIE53_004429 0.51 -0.2
619,698 - ABIE53_004429 0.52 -0.2
619,698 - ABIE53_004429 0.52 +0.1
619,768 + ABIE53_004429 0.62 -1.2
619,768 + ABIE53_004429 0.62 -1.4
619,769 - ABIE53_004429 0.62 -0.8
619,884 + ABIE53_004429 0.79 +0.5
619,885 - ABIE53_004429 0.79 -0.7
620,023 + -3.4
620,024 - +0.4
620,115 + -2.6
620,116 - +0.8
620,116 - +1.4
620,116 - +2.1
620,126 - +1.2
620,140 - +0.1
620,140 - +0.8
620,140 - +0.8
620,140 - -1.5
620,140 - +0.6
620,141 + +2.4
620,141 + -0.2
620,142 - -1.8
620,238 + -0.2
620,238 + +3.5
620,238 + +0.1
620,239 - +0.6
620,239 - -1.1
620,239 - -0.9
620,386 + +1.4
620,386 + -3.0
620,387 - -0.9
620,389 + +1.0
620,389 + +0.3
620,389 + +0.1
620,389 + -1.6
620,390 - ABIE53_004430 0.10 -0.2
620,390 - ABIE53_004430 0.10 -0.7
620,390 - ABIE53_004430 0.10 -0.3
620,390 - ABIE53_004430 0.10 +0.4
620,410 + ABIE53_004430 0.11 +1.4
620,461 + ABIE53_004430 0.15 +0.8
620,462 - ABIE53_004430 0.15 +0.1
620,680 + ABIE53_004430 0.29 -0.2
620,681 - ABIE53_004430 0.29 +0.8
620,789 - ABIE53_004430 0.36 -0.9
620,901 + ABIE53_004430 0.43 -3.0
620,902 - ABIE53_004430 0.43 -0.3

Or see this region's nucleotide sequence