Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004327 and ABIE53_004328 are separated by 378 nucleotides ABIE53_004328 and ABIE53_004329 are separated by 26 nucleotides ABIE53_004329 and ABIE53_004330 are separated by 111 nucleotides
ABIE53_004327: ABIE53_004327 - GntR family transcriptional repressor for pyruvate dehydrogenase complex, at 501,447 to 501,992
_004327
ABIE53_004328: ABIE53_004328 - nucleotide-binding universal stress UspA family protein, at 502,371 to 502,850
_004328
ABIE53_004329: ABIE53_004329 - two-component system response regulator ChvI, at 502,877 to 503,410
_004329
ABIE53_004330: ABIE53_004330 - 2-oxoglutarate dehydrogenase E1 component, at 503,522 to 506,128
_004330
Position (kb) 502
503
504 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 502.061 kb on + strand at 502.061 kb on + strand at 502.061 kb on + strand at 502.061 kb on + strand at 502.062 kb on - strand at 502.062 kb on - strand at 502.166 kb on - strand at 502.166 kb on - strand at 502.166 kb on - strand at 502.178 kb on + strand at 502.179 kb on - strand at 502.305 kb on + strand at 502.305 kb on + strand at 502.305 kb on + strand at 502.306 kb on - strand at 502.306 kb on - strand at 502.306 kb on - strand at 502.306 kb on - strand at 502.370 kb on + strand at 502.370 kb on + strand at 502.370 kb on + strand at 502.370 kb on + strand at 502.370 kb on + strand at 502.370 kb on + strand at 502.370 kb on + strand at 502.370 kb on + strand at 502.371 kb on - strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.375 kb on - strand at 502.375 kb on - strand at 502.375 kb on - strand at 502.375 kb on - strand at 502.375 kb on - strand at 502.375 kb on - strand at 502.375 kb on - strand at 502.375 kb on - strand at 502.375 kb on - strand at 502.375 kb on - strand at 502.479 kb on + strand, within ABIE53_004328 at 502.479 kb on + strand, within ABIE53_004328 at 502.479 kb on + strand, within ABIE53_004328 at 502.479 kb on + strand, within ABIE53_004328 at 502.479 kb on + strand, within ABIE53_004328 at 502.479 kb on + strand, within ABIE53_004328 at 502.480 kb on - strand, within ABIE53_004328 at 502.480 kb on - strand, within ABIE53_004328 at 502.480 kb on - strand, within ABIE53_004328 at 502.480 kb on - strand, within ABIE53_004328 at 502.480 kb on - strand, within ABIE53_004328 at 502.503 kb on + strand, within ABIE53_004328 at 502.503 kb on + strand, within ABIE53_004328 at 502.503 kb on + strand, within ABIE53_004328 at 502.503 kb on + strand, within ABIE53_004328 at 502.521 kb on + strand, within ABIE53_004328 at 502.654 kb on + strand, within ABIE53_004328 at 502.654 kb on + strand, within ABIE53_004328 at 502.654 kb on + strand, within ABIE53_004328 at 502.654 kb on + strand, within ABIE53_004328 at 502.654 kb on + strand, within ABIE53_004328 at 502.654 kb on + strand, within ABIE53_004328 at 502.654 kb on + strand, within ABIE53_004328 at 502.654 kb on + strand, within ABIE53_004328 at 502.654 kb on + strand, within ABIE53_004328 at 502.655 kb on - strand, within ABIE53_004328 at 502.655 kb on - strand, within ABIE53_004328 at 502.655 kb on - strand, within ABIE53_004328 at 502.655 kb on - strand, within ABIE53_004328 at 502.655 kb on - strand, within ABIE53_004328 at 502.655 kb on - strand, within ABIE53_004328 at 502.655 kb on - strand, within ABIE53_004328 at 502.655 kb on - strand, within ABIE53_004328 at 502.655 kb on - strand, within ABIE53_004328 at 502.655 kb on - strand, within ABIE53_004328 at 502.655 kb on - strand, within ABIE53_004328 at 502.655 kb on - strand, within ABIE53_004328 at 502.655 kb on - strand, within ABIE53_004328 at 502.655 kb on - strand, within ABIE53_004328 at 503.078 kb on + strand, within ABIE53_004329 at 503.078 kb on + strand, within ABIE53_004329 at 503.078 kb on + strand, within ABIE53_004329 at 503.078 kb on + strand, within ABIE53_004329 at 503.079 kb on - strand, within ABIE53_004329 at 503.079 kb on - strand, within ABIE53_004329 at 503.079 kb on - strand, within ABIE53_004329 at 503.079 kb on - strand, within ABIE53_004329 at 503.079 kb on - strand, within ABIE53_004329 at 503.079 kb on - strand, within ABIE53_004329 at 503.079 kb on - strand, within ABIE53_004329 at 503.079 kb on - strand, within ABIE53_004329 at 503.079 kb on - strand, within ABIE53_004329 at 503.184 kb on - strand, within ABIE53_004329 at 503.184 kb on - strand, within ABIE53_004329 at 503.184 kb on - strand, within ABIE53_004329 at 503.190 kb on + strand, within ABIE53_004329 at 503.191 kb on - strand, within ABIE53_004329 at 503.255 kb on + strand, within ABIE53_004329 at 503.255 kb on + strand, within ABIE53_004329 at 503.256 kb on - strand, within ABIE53_004329 at 503.256 kb on - strand, within ABIE53_004329 at 503.256 kb on - strand, within ABIE53_004329 at 503.421 kb on + strand at 503.421 kb on + strand at 503.422 kb on - strand at 503.422 kb on - strand at 503.472 kb on + strand at 503.472 kb on + strand at 503.472 kb on + strand at 503.473 kb on - strand at 503.473 kb on - strand at 503.670 kb on - strand at 503.778 kb on + strand at 503.847 kb on + strand, within ABIE53_004330 at 503.847 kb on + strand, within ABIE53_004330 at 503.847 kb on + strand, within ABIE53_004330 at 503.848 kb on - strand, within ABIE53_004330 at 503.980 kb on - strand, within ABIE53_004330 at 504.049 kb on + strand, within ABIE53_004330 at 504.049 kb on + strand, within ABIE53_004330 at 504.049 kb on + strand, within ABIE53_004330 at 504.050 kb on - strand, within ABIE53_004330 at 504.050 kb on - strand, within ABIE53_004330 at 504.050 kb on - strand, within ABIE53_004330 at 504.107 kb on + strand, within ABIE53_004330 at 504.107 kb on + strand, within ABIE53_004330 at 504.107 kb on + strand, within ABIE53_004330 at 504.107 kb on + strand, within ABIE53_004330 at 504.107 kb on + strand, within ABIE53_004330 at 504.107 kb on + strand, within ABIE53_004330 at 504.108 kb on - strand, within ABIE53_004330 at 504.108 kb on - strand, within ABIE53_004330 at 504.108 kb on - strand, within ABIE53_004330 at 504.108 kb on - strand, within ABIE53_004330 at 504.129 kb on + strand, within ABIE53_004330 at 504.130 kb on - strand, within ABIE53_004330 at 504.210 kb on + strand, within ABIE53_004330 at 504.228 kb on + strand, within ABIE53_004330 at 504.228 kb on + strand, within ABIE53_004330 at 504.228 kb on + strand, within ABIE53_004330 at 504.228 kb on + strand, within ABIE53_004330 at 504.228 kb on + strand, within ABIE53_004330 at 504.228 kb on + strand, within ABIE53_004330 at 504.228 kb on + strand, within ABIE53_004330 at 504.228 kb on + strand, within ABIE53_004330 at 504.229 kb on - strand, within ABIE53_004330 at 504.229 kb on - strand, within ABIE53_004330 at 504.229 kb on - strand, within ABIE53_004330 at 504.229 kb on - strand, within ABIE53_004330 at 504.229 kb on - strand, within ABIE53_004330 at 504.229 kb on - strand, within ABIE53_004330 at 504.229 kb on - strand, within ABIE53_004330 at 504.315 kb on + strand, within ABIE53_004330 at 504.316 kb on - strand, within ABIE53_004330
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days remove 502,061 + +4.3 502,061 + -0.5 502,061 + -0.2 502,061 + -0.9 502,062 - -0.0 502,062 - -0.8 502,166 - +3.3 502,166 - -1.1 502,166 - +0.3 502,178 + +0.8 502,179 - +0.4 502,305 + -1.1 502,305 + -3.0 502,305 + -2.6 502,306 - -0.7 502,306 - +1.7 502,306 - -0.9 502,306 - +1.8 502,370 + +1.2 502,370 + +3.4 502,370 + -1.5 502,370 + +0.8 502,370 + -0.8 502,370 + -1.8 502,370 + -0.5 502,370 + -0.7 502,371 - +0.6 502,374 + +0.8 502,374 + +0.4 502,374 + -0.6 502,374 + -0.1 502,374 + -0.9 502,374 + -1.8 502,374 + +1.2 502,374 + -0.7 502,374 + +2.1 502,374 + +2.7 502,374 + +0.8 502,374 + -1.3 502,374 + -1.1 502,374 + +1.6 502,374 + -1.5 502,375 - -1.1 502,375 - -1.2 502,375 - +1.0 502,375 - -1.8 502,375 - +0.8 502,375 - +1.2 502,375 - +0.6 502,375 - +1.4 502,375 - +2.7 502,375 - -0.0 502,479 + ABIE53_004328 0.23 +1.0 502,479 + ABIE53_004328 0.23 +0.1 502,479 + ABIE53_004328 0.23 +0.8 502,479 + ABIE53_004328 0.23 -0.9 502,479 + ABIE53_004328 0.23 -1.4 502,479 + ABIE53_004328 0.23 -0.4 502,480 - ABIE53_004328 0.23 -1.1 502,480 - ABIE53_004328 0.23 -0.4 502,480 - ABIE53_004328 0.23 +1.2 502,480 - ABIE53_004328 0.23 +0.1 502,480 - ABIE53_004328 0.23 -0.1 502,503 + ABIE53_004328 0.28 +0.4 502,503 + ABIE53_004328 0.28 +1.2 502,503 + ABIE53_004328 0.28 -1.4 502,503 + ABIE53_004328 0.28 +0.6 502,521 + ABIE53_004328 0.31 +0.2 502,654 + ABIE53_004328 0.59 -0.5 502,654 + ABIE53_004328 0.59 -0.8 502,654 + ABIE53_004328 0.59 -1.2 502,654 + ABIE53_004328 0.59 +2.0 502,654 + ABIE53_004328 0.59 -0.7 502,654 + ABIE53_004328 0.59 +0.6 502,654 + ABIE53_004328 0.59 -0.5 502,654 + ABIE53_004328 0.59 +0.8 502,654 + ABIE53_004328 0.59 +0.3 502,655 - ABIE53_004328 0.59 -0.8 502,655 - ABIE53_004328 0.59 -1.6 502,655 - ABIE53_004328 0.59 -0.4 502,655 - ABIE53_004328 0.59 +0.4 502,655 - ABIE53_004328 0.59 +0.6 502,655 - ABIE53_004328 0.59 -2.2 502,655 - ABIE53_004328 0.59 -1.5 502,655 - ABIE53_004328 0.59 -1.7 502,655 - ABIE53_004328 0.59 -0.9 502,655 - ABIE53_004328 0.59 +0.1 502,655 - ABIE53_004328 0.59 -0.4 502,655 - ABIE53_004328 0.59 +1.1 502,655 - ABIE53_004328 0.59 +0.1 502,655 - ABIE53_004328 0.59 -1.4 503,078 + ABIE53_004329 0.38 -0.3 503,078 + ABIE53_004329 0.38 -0.8 503,078 + ABIE53_004329 0.38 +0.6 503,078 + ABIE53_004329 0.38 -0.4 503,079 - ABIE53_004329 0.38 +1.8 503,079 - ABIE53_004329 0.38 -0.4 503,079 - ABIE53_004329 0.38 +1.5 503,079 - ABIE53_004329 0.38 +2.2 503,079 - ABIE53_004329 0.38 -0.3 503,079 - ABIE53_004329 0.38 +0.4 503,079 - ABIE53_004329 0.38 +1.4 503,079 - ABIE53_004329 0.38 -0.2 503,079 - ABIE53_004329 0.38 +1.2 503,184 - ABIE53_004329 0.57 -0.1 503,184 - ABIE53_004329 0.57 -1.0 503,184 - ABIE53_004329 0.57 -0.2 503,190 + ABIE53_004329 0.59 +1.4 503,191 - ABIE53_004329 0.59 +1.2 503,255 + ABIE53_004329 0.71 +1.9 503,255 + ABIE53_004329 0.71 -0.4 503,256 - ABIE53_004329 0.71 -1.2 503,256 - ABIE53_004329 0.71 +0.1 503,256 - ABIE53_004329 0.71 +0.1 503,421 + +1.2 503,421 + -1.3 503,422 - +0.7 503,422 - -0.6 503,472 + -0.4 503,472 + -1.7 503,472 + -0.5 503,473 - -0.8 503,473 - -1.3 503,670 - +0.3 503,778 + +0.6 503,847 + ABIE53_004330 0.12 +0.6 503,847 + ABIE53_004330 0.12 -1.8 503,847 + ABIE53_004330 0.12 -1.8 503,848 - ABIE53_004330 0.13 +0.9 503,980 - ABIE53_004330 0.18 +3.7 504,049 + ABIE53_004330 0.20 -1.5 504,049 + ABIE53_004330 0.20 +0.8 504,049 + ABIE53_004330 0.20 +0.5 504,050 - ABIE53_004330 0.20 -0.6 504,050 - ABIE53_004330 0.20 +0.1 504,050 - ABIE53_004330 0.20 -1.2 504,107 + ABIE53_004330 0.22 +0.4 504,107 + ABIE53_004330 0.22 +1.8 504,107 + ABIE53_004330 0.22 +1.1 504,107 + ABIE53_004330 0.22 +0.1 504,107 + ABIE53_004330 0.22 -1.7 504,107 + ABIE53_004330 0.22 -0.6 504,108 - ABIE53_004330 0.22 -0.1 504,108 - ABIE53_004330 0.22 +1.2 504,108 - ABIE53_004330 0.22 -1.3 504,108 - ABIE53_004330 0.22 +0.8 504,129 + ABIE53_004330 0.23 -0.6 504,130 - ABIE53_004330 0.23 +1.8 504,210 + ABIE53_004330 0.26 +0.4 504,228 + ABIE53_004330 0.27 +0.8 504,228 + ABIE53_004330 0.27 +0.1 504,228 + ABIE53_004330 0.27 -0.6 504,228 + ABIE53_004330 0.27 +0.4 504,228 + ABIE53_004330 0.27 +0.4 504,228 + ABIE53_004330 0.27 +1.3 504,228 + ABIE53_004330 0.27 -0.5 504,228 + ABIE53_004330 0.27 +1.3 504,229 - ABIE53_004330 0.27 -1.1 504,229 - ABIE53_004330 0.27 -0.6 504,229 - ABIE53_004330 0.27 -0.2 504,229 - ABIE53_004330 0.27 +1.2 504,229 - ABIE53_004330 0.27 +0.1 504,229 - ABIE53_004330 0.27 +2.3 504,229 - ABIE53_004330 0.27 +0.1 504,315 + ABIE53_004330 0.30 +2.1 504,316 - ABIE53_004330 0.30 -0.6
Or see this region's nucleotide sequence