Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002861

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
3,230,601	+		ABIE53_002860	0.63	-1.9
3,230,601	+		ABIE53_002860	0.63	-0.7
3,230,601	+		ABIE53_002860	0.63	+1.8
3,230,601	+		ABIE53_002860	0.63	-0.1
3,230,601	+		ABIE53_002860	0.63	-1.0
3,230,601	+		ABIE53_002860	0.63	-1.1
3,230,601	+		ABIE53_002860	0.63	-0.3
3,230,601	+		ABIE53_002860	0.63	-1.2
3,230,602	-		ABIE53_002860	0.63	-0.6
3,230,602	-		ABIE53_002860	0.63	+0.1
3,230,602	-		ABIE53_002860	0.63	-1.1
3,230,602	-		ABIE53_002860	0.63	-0.8
3,230,602	-		ABIE53_002860	0.63	-0.9
3,230,614	-		ABIE53_002860	0.64	-2.1
3,230,678	+		ABIE53_002860	0.68	+0.1
3,230,679	-		ABIE53_002860	0.68	-0.1
3,230,679	-		ABIE53_002860	0.68	-0.9
3,230,732	+		ABIE53_002860	0.71	+0.9
3,230,733	-		ABIE53_002860	0.71	-1.7
3,230,733	-		ABIE53_002860	0.71	-2.0
3,230,733	-		ABIE53_002860	0.71	-1.3
3,230,790	+		ABIE53_002860	0.75	-1.2
3,230,790	+		ABIE53_002860	0.75	-1.4
3,230,790	+		ABIE53_002860	0.75	+2.8
3,230,791	-		ABIE53_002860	0.75	-2.2
3,230,791	-		ABIE53_002860	0.75	-1.6
3,230,791	-		ABIE53_002860	0.75	+1.4
3,230,802	+		ABIE53_002860	0.76	-2.0
3,230,802	+		ABIE53_002860	0.76	-1.7
3,230,802	+		ABIE53_002860	0.76	+0.6
3,230,803	-		ABIE53_002860	0.76	-0.1
3,230,803	-		ABIE53_002860	0.76	+1.4
3,230,817	+		ABIE53_002860	0.77	-0.1
3,230,817	+		ABIE53_002860	0.77	-1.8
3,230,818	-		ABIE53_002860	0.77	-1.3
3,230,818	-		ABIE53_002860	0.77	+0.4
3,230,818	-		ABIE53_002860	0.77	-2.3
3,230,818	-		ABIE53_002860	0.77	-0.5
3,230,818	-		ABIE53_002860	0.77	+0.4
3,230,818	-		ABIE53_002860	0.77	+2.4
3,230,818	-		ABIE53_002860	0.77	+0.1
3,230,818	-		ABIE53_002860	0.77	-1.3
3,230,818	-		ABIE53_002860	0.77	-1.5
3,230,818	-		ABIE53_002860	0.77	+1.4
3,230,818	-		ABIE53_002860	0.77	+0.4
3,230,819	+		ABIE53_002860	0.77	-1.6
3,230,819	+		ABIE53_002860	0.77	+0.4
3,230,819	+		ABIE53_002860	0.77	-1.8
3,230,819	+		ABIE53_002860	0.77	+0.1
3,230,819	+		ABIE53_002860	0.77	+1.6
3,230,820	-		ABIE53_002860	0.77	-0.1
3,230,820	-		ABIE53_002860	0.77	+0.4
3,230,820	-		ABIE53_002860	0.77	+2.4
3,231,254	+				-0.0
3,231,254	+				-0.7
3,231,255	-				-0.7
3,231,313	-				-1.6
3,231,366	+				-0.6
3,231,366	+				+0.9
3,231,366	+				+1.0
3,231,366	+				+2.6
3,231,367	-				-0.6
3,231,367	-				-1.8
3,231,367	-				-0.4
3,231,399	-				+0.6
3,231,399	-				-0.3
3,231,434	+				+2.4
3,231,447	-				+1.1
3,231,447	-				-0.4
3,231,447	-				-1.9
3,231,447	-				-1.9
3,231,447	-				-0.6
3,231,447	-				+0.4
3,231,490	+				-2.0
3,231,490	+				+0.7
3,231,491	-				+0.4
3,231,491	-				-1.9
3,231,491	-				+0.1
3,231,491	-				+1.4
3,231,491	-				-3.2
3,231,491	-				-0.1
3,231,535	+				-2.9
3,231,535	+				-0.3
3,231,557	+		ABIE53_002861	0.11	-1.8
3,232,003	-		ABIE53_002861	0.57	-0.1
3,232,020	+		ABIE53_002861	0.59	+1.8
3,232,021	-		ABIE53_002861	0.59	+0.9
3,232,021	-		ABIE53_002861	0.59	+1.4
3,232,032	+		ABIE53_002861	0.60	-1.3
3,232,116	+		ABIE53_002861	0.69	+0.4
3,232,116	+		ABIE53_002861	0.69	-0.1
3,232,116	+		ABIE53_002861	0.69	+1.2
3,232,116	+		ABIE53_002861	0.69	-0.9
3,232,117	-		ABIE53_002861	0.69	-1.0
3,232,117	-		ABIE53_002861	0.69	+2.7
3,232,194	+		ABIE53_002861	0.77	-0.1
3,232,194	+		ABIE53_002861	0.77	-0.6
3,232,194	+		ABIE53_002861	0.77	-1.3
3,232,194	+		ABIE53_002861	0.77	-1.9
3,232,195	-		ABIE53_002861	0.77	-1.8
3,232,195	-		ABIE53_002861	0.77	-0.2
3,232,195	-		ABIE53_002861	0.77	-0.1
3,232,195	-		ABIE53_002861	0.77	-0.1
3,232,195	-		ABIE53_002861	0.77	-1.7
3,232,195	-		ABIE53_002861	0.77	+0.3
3,232,413	-				-0.1
3,232,413	-				+0.6
3,232,457	-				-0.9
3,232,505	+				+0.3
3,232,602	+				-1.6
3,232,603	-				-1.3
3,232,652	+				+0.1
3,232,652	+				-1.1
3,232,653	-				-1.2
3,232,653	-				-1.3
3,232,653	-				-0.6
3,232,653	-				-1.4
3,232,653	-				-1.5
3,232,658	+				-0.7
3,232,670	+				-0.6
3,232,671	-				-0.4
3,232,671	-				-0.9
3,232,685	+				-0.8
3,232,780	+				+1.4
3,232,780	+				-0.0
3,232,781	-				+1.9
3,232,781	-				-0.4
3,232,781	-				+0.4
3,232,781	-				-0.7
3,232,781	-				-2.0
3,232,781	-				-0.8
3,232,854	+				-2.6
3,232,901	+				+1.3
3,232,901	+				-1.6
3,232,901	+				-1.1
3,232,902	-				+0.9
3,233,067	+		ABIE53_002862	0.10	-1.9
3,233,068	-		ABIE53_002862	0.10	-2.6
3,233,154	+		ABIE53_002862	0.17	-0.1
3,233,154	+		ABIE53_002862	0.17	-2.3
3,233,154	+		ABIE53_002862	0.17	-0.7
3,233,154	+		ABIE53_002862	0.17	-2.4
3,233,155	-		ABIE53_002862	0.17	-5.4
3,233,155	-		ABIE53_002862	0.17	-1.5
3,233,155	-		ABIE53_002862	0.17	-3.2
3,233,155	-		ABIE53_002862	0.17	+0.1
3,233,166	+		ABIE53_002862	0.18	-1.0
3,233,166	+		ABIE53_002862	0.18	-1.3
3,233,166	+		ABIE53_002862	0.18	-1.6
3,233,167	-		ABIE53_002862	0.18	-1.5
3,233,167	-		ABIE53_002862	0.18	-3.4
3,233,167	-		ABIE53_002862	0.18	-0.9
3,233,250	+		ABIE53_002862	0.25	+0.9
3,233,250	+		ABIE53_002862	0.25	-0.1
3,233,250	+		ABIE53_002862	0.25	-1.0
3,233,251	-		ABIE53_002862	0.25	-0.7
3,233,251	-		ABIE53_002862	0.25	-1.6
3,233,251	-		ABIE53_002862	0.25	+2.4
3,233,251	-		ABIE53_002862	0.25	-2.6
3,233,251	-		ABIE53_002862	0.25	-1.4
3,233,405	+		ABIE53_002862	0.38	-1.8
3,233,405	+		ABIE53_002862	0.38	-5.0
3,233,405	+		ABIE53_002862	0.38	-2.7