Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002109

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
2,363,922	+		ABIE53_002108	0.72	+1.7
2,363,922	+		ABIE53_002108	0.72	-1.4
2,363,923	-		ABIE53_002108	0.72	+0.5
2,364,052	+		ABIE53_002108	0.76	-0.5
2,364,052	+		ABIE53_002108	0.76	+0.4
2,364,052	+		ABIE53_002108	0.76	+0.9
2,364,053	-		ABIE53_002108	0.76	+0.5
2,364,053	-		ABIE53_002108	0.76	+0.9
2,364,053	-		ABIE53_002108	0.76	-0.5
2,364,132	+		ABIE53_002108	0.78	-0.9
2,364,133	-		ABIE53_002108	0.78	+0.2
2,364,133	-		ABIE53_002108	0.78	-1.4
2,364,133	-		ABIE53_002108	0.78	-0.8
2,364,133	-		ABIE53_002108	0.78	-0.1
2,364,210	+		ABIE53_002108	0.80	+0.9
2,364,210	+		ABIE53_002108	0.80	+0.4
2,364,210	+		ABIE53_002108	0.80	-0.9
2,364,378	+		ABIE53_002108	0.85	+0.9
2,364,378	+		ABIE53_002108	0.85	+2.9
2,364,378	+		ABIE53_002108	0.85	-0.9
2,364,378	+		ABIE53_002108	0.85	+2.9
2,364,378	+		ABIE53_002108	0.85	+0.9
2,364,379	-		ABIE53_002108	0.85	-1.8
2,364,379	-		ABIE53_002108	0.85	+2.0
2,364,616	+				-0.5
2,364,616	+				-0.5
2,364,617	-				-2.4
2,364,776	+				+1.5
2,364,777	-				-0.4
2,364,821	+				+1.1
2,364,821	+				-0.3
2,364,822	-				-1.1
2,364,862	+				-1.1
2,364,862	+				-0.5
2,365,032	+		ABIE53_002109	0.11	-0.5
2,365,032	+		ABIE53_002109	0.11	-0.3
2,365,032	+		ABIE53_002109	0.11	-1.1
2,365,033	-		ABIE53_002109	0.11	+0.4
2,365,035	+		ABIE53_002109	0.11	+0.1
2,365,035	+		ABIE53_002109	0.11	-0.7
2,365,035	+		ABIE53_002109	0.11	+0.4
2,365,035	+		ABIE53_002109	0.11	-0.5
2,365,035	+		ABIE53_002109	0.11	+0.8
2,365,035	+		ABIE53_002109	0.11	+0.0
2,365,036	-		ABIE53_002109	0.11	+0.8
2,365,036	-		ABIE53_002109	0.11	+0.3
2,365,036	-		ABIE53_002109	0.11	-0.3
2,365,036	-		ABIE53_002109	0.11	-0.5
2,365,036	-		ABIE53_002109	0.11	-0.9
2,365,036	-		ABIE53_002109	0.11	-0.5
2,365,062	+		ABIE53_002109	0.13	-1.3
2,365,062	+		ABIE53_002109	0.13	+0.5
2,365,063	-		ABIE53_002109	0.13	-1.2
2,365,063	-		ABIE53_002109	0.13	+1.3
2,365,131	+		ABIE53_002109	0.19	-0.1
2,365,386	+		ABIE53_002109	0.41	+2.3
2,365,386	+		ABIE53_002109	0.41	-2.3
2,365,386	+		ABIE53_002109	0.41	-0.9
2,365,386	+		ABIE53_002109	0.41	-1.6
2,365,387	-		ABIE53_002109	0.41	-1.3
2,365,387	-		ABIE53_002109	0.41	-0.3
2,365,387	-		ABIE53_002109	0.41	+3.5
2,365,387	-		ABIE53_002109	0.41	-0.1
2,365,387	-		ABIE53_002109	0.41	+0.9
2,365,387	-		ABIE53_002109	0.41	-0.7
2,365,387	-		ABIE53_002109	0.41	-0.6
2,365,387	-		ABIE53_002109	0.41	+1.3
2,365,387	-		ABIE53_002109	0.41	+0.2
2,365,470	+		ABIE53_002109	0.49	+3.2
2,365,470	+		ABIE53_002109	0.49	-0.3
2,365,470	+		ABIE53_002109	0.49	-0.1
2,365,470	+		ABIE53_002109	0.49	+1.3
2,365,471	-		ABIE53_002109	0.49	-0.4
2,365,471	-		ABIE53_002109	0.49	+0.4
2,365,471	-		ABIE53_002109	0.49	-2.4
2,365,471	-		ABIE53_002109	0.49	+0.8
2,365,527	+		ABIE53_002109	0.54	-1.4
2,365,527	+		ABIE53_002109	0.54	+0.8
2,365,527	+		ABIE53_002109	0.54	+0.5
2,365,528	-		ABIE53_002109	0.54	-1.5
2,365,537	+		ABIE53_002109	0.55	-0.8
2,365,560	+		ABIE53_002109	0.57	-0.1
2,365,560	+		ABIE53_002109	0.57	+0.3
2,365,681	-		ABIE53_002109	0.67	-0.8
2,365,688	+		ABIE53_002109	0.68	+1.5
2,365,767	+		ABIE53_002109	0.74	-0.7
2,366,173	+		ABIE53_002110	0.28	-0.1
2,366,173	+		ABIE53_002110	0.28	-1.4
2,366,173	+		ABIE53_002110	0.28	-1.1
2,366,173	+		ABIE53_002110	0.28	+0.5
2,366,173	+		ABIE53_002110	0.28	+2.5
2,366,174	-		ABIE53_002110	0.28	-0.4
2,366,339	+		ABIE53_002110	0.72	+1.6
2,366,339	+		ABIE53_002110	0.72	+2.4
2,366,339	+		ABIE53_002110	0.72	-0.9
2,366,340	-		ABIE53_002110	0.73	+0.1
2,366,340	-		ABIE53_002110	0.73	-0.1
2,366,340	-		ABIE53_002110	0.73	-0.7
2,366,340	-		ABIE53_002110	0.73	+0.5
2,366,340	-		ABIE53_002110	0.73	-0.3
2,366,370	+		ABIE53_002110	0.81	+0.4
2,366,370	+		ABIE53_002110	0.81	-1.2
2,366,370	-		ABIE53_002110	0.81	-2.6
2,366,371	-		ABIE53_002110	0.81	+1.5
2,366,593	+				-0.7
2,366,593	+				-0.8
2,366,593	+				-0.3
2,366,594	-				-1.8
2,366,594	-				-1.3
2,366,631	-		ABIE53_002111	0.11	+1.1
2,366,709	+		ABIE53_002111	0.29	-0.3
2,366,709	+		ABIE53_002111	0.29	+2.7
2,366,710	-		ABIE53_002111	0.29	+0.3
2,366,937	+		ABIE53_002111	0.79	+0.5
2,366,975	+		ABIE53_002111	0.87	-0.1
2,366,975	+		ABIE53_002111	0.87	-0.5
2,366,975	+		ABIE53_002111	0.87	-1.6
2,366,975	+		ABIE53_002111	0.87	-0.3
2,366,975	+		ABIE53_002111	0.87	-0.7
2,366,975	+		ABIE53_002111	0.87	-0.1
2,366,975	+		ABIE53_002111	0.87	+0.1
2,366,976	-		ABIE53_002111	0.88	+0.7
2,366,976	-		ABIE53_002111	0.88	-0.0
2,366,976	-		ABIE53_002111	0.88	+1.3
2,366,976	-		ABIE53_002111	0.88	-2.2
2,366,976	-		ABIE53_002111	0.88	-0.7
2,366,976	-		ABIE53_002111	0.88	+0.7
2,366,976	-		ABIE53_002111	0.88	+0.6
2,366,976	-		ABIE53_002111	0.88	+0.0
2,366,988	+				+3.4
2,366,988	+				+0.9
2,366,988	+				-0.9
2,366,988	+				-0.9
2,366,989	-				+1.5
2,366,989	-				-0.8
2,366,989	-				+1.7
2,366,989	-				-1.7