Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004180 and ABIE53_004181 overlap by 8 nucleotides ABIE53_004181 and ABIE53_004182 are separated by 43 nucleotides
ABIE53_004180: ABIE53_004180 - NADPH-dependent 2,4-dienoyl-CoA reductase/sulfur reductase-like enzyme, at 354,620 to 356,053
_004180
ABIE53_004181: ABIE53_004181 - sarcosine oxidase subunit beta, at 356,046 to 357,173
_004181
ABIE53_004182: ABIE53_004182 - putative spermidine/putrescine transport system substrate-binding protein, at 357,217 to 358,263
_004182
Position (kb) 356
357
358 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 355.071 kb on + strand, within ABIE53_004180 at 355.127 kb on + strand, within ABIE53_004180 at 355.134 kb on - strand, within ABIE53_004180 at 355.250 kb on + strand, within ABIE53_004180 at 355.250 kb on + strand, within ABIE53_004180 at 355.251 kb on - strand, within ABIE53_004180 at 355.530 kb on - strand, within ABIE53_004180 at 355.530 kb on - strand, within ABIE53_004180 at 355.530 kb on - strand, within ABIE53_004180 at 355.811 kb on - strand, within ABIE53_004180 at 355.811 kb on - strand, within ABIE53_004180 at 356.006 kb on + strand at 356.006 kb on + strand at 356.007 kb on - strand at 356.065 kb on - strand at 356.712 kb on + strand, within ABIE53_004181 at 356.713 kb on - strand, within ABIE53_004181 at 356.713 kb on - strand, within ABIE53_004181 at 356.788 kb on - strand, within ABIE53_004181 at 357.171 kb on + strand at 357.171 kb on + strand at 357.172 kb on - strand at 357.172 kb on - strand at 357.304 kb on + strand at 357.341 kb on - strand, within ABIE53_004182 at 357.342 kb on + strand, within ABIE53_004182 at 357.342 kb on + strand, within ABIE53_004182 at 357.342 kb on + strand, within ABIE53_004182 at 357.342 kb on + strand, within ABIE53_004182 at 357.343 kb on - strand, within ABIE53_004182 at 357.343 kb on - strand, within ABIE53_004182 at 357.343 kb on - strand, within ABIE53_004182 at 357.512 kb on + strand, within ABIE53_004182 at 357.513 kb on - strand, within ABIE53_004182 at 357.513 kb on - strand, within ABIE53_004182 at 357.553 kb on + strand, within ABIE53_004182 at 357.554 kb on - strand, within ABIE53_004182 at 357.619 kb on + strand, within ABIE53_004182 at 357.620 kb on - strand, within ABIE53_004182 at 357.620 kb on - strand, within ABIE53_004182 at 357.819 kb on + strand, within ABIE53_004182 at 357.844 kb on + strand, within ABIE53_004182 at 357.845 kb on - strand, within ABIE53_004182 at 357.845 kb on - strand, within ABIE53_004182 at 357.958 kb on + strand, within ABIE53_004182 at 357.958 kb on + strand, within ABIE53_004182 at 357.958 kb on + strand, within ABIE53_004182
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days remove 355,071 + ABIE53_004180 0.31 -0.7 355,127 + ABIE53_004180 0.35 -1.5 355,134 - ABIE53_004180 0.36 -0.7 355,250 + ABIE53_004180 0.44 -1.9 355,250 + ABIE53_004180 0.44 -0.8 355,251 - ABIE53_004180 0.44 -1.9 355,530 - ABIE53_004180 0.63 -0.7 355,530 - ABIE53_004180 0.63 +2.3 355,530 - ABIE53_004180 0.63 -0.6 355,811 - ABIE53_004180 0.83 +0.7 355,811 - ABIE53_004180 0.83 -0.5 356,006 + -2.5 356,006 + -1.9 356,007 - +0.3 356,065 - +0.3 356,712 + ABIE53_004181 0.59 -0.9 356,713 - ABIE53_004181 0.59 -1.9 356,713 - ABIE53_004181 0.59 -0.2 356,788 - ABIE53_004181 0.66 -1.8 357,171 + -2.8 357,171 + +0.3 357,172 - +0.1 357,172 - -1.8 357,304 + -0.5 357,341 - ABIE53_004182 0.12 -1.9 357,342 + ABIE53_004182 0.12 -1.8 357,342 + ABIE53_004182 0.12 +0.1 357,342 + ABIE53_004182 0.12 -0.1 357,342 + ABIE53_004182 0.12 -1.4 357,343 - ABIE53_004182 0.12 -1.4 357,343 - ABIE53_004182 0.12 -1.5 357,343 - ABIE53_004182 0.12 -0.5 357,512 + ABIE53_004182 0.28 +1.3 357,513 - ABIE53_004182 0.28 -0.2 357,513 - ABIE53_004182 0.28 -1.4 357,553 + ABIE53_004182 0.32 +0.3 357,554 - ABIE53_004182 0.32 +0.3 357,619 + ABIE53_004182 0.38 -0.3 357,620 - ABIE53_004182 0.38 +0.3 357,620 - ABIE53_004182 0.38 -1.1 357,819 + ABIE53_004182 0.57 -0.7 357,844 + ABIE53_004182 0.60 +1.7 357,845 - ABIE53_004182 0.60 +2.3 357,845 - ABIE53_004182 0.60 +1.5 357,958 + ABIE53_004182 0.71 -1.1 357,958 + ABIE53_004182 0.71 -1.6 357,958 + ABIE53_004182 0.71 +1.9
Or see this region's nucleotide sequence