Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003374

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
3,794,945	+		ABIE53_003372	0.35	+0.0
3,795,075	+				-1.5
3,795,075	+				-1.8
3,795,075	+				-1.5
3,795,075	+				-1.2
3,795,075	+				+0.7
3,795,075	+				+0.8
3,795,075	+				-0.6
3,795,075	+				-0.4
3,795,075	+				+2.6
3,795,075	+				-0.4
3,795,075	+				+1.7
3,795,076	+				+0.0
3,795,076	-				+1.4
3,795,076	-				-1.3
3,795,076	-				-2.4
3,795,076	-				-0.8
3,795,076	-				-2.8
3,795,076	-				-0.4
3,795,076	-				+0.8
3,795,076	-				+1.0
3,795,076	-				+0.0
3,795,079	+				+0.1
3,795,079	+				+0.0
3,795,079	+				-2.8
3,795,079	+				-0.6
3,795,079	+				-0.2
3,795,079	+				+1.4
3,795,079	+				+2.1
3,795,079	+				-1.0
3,795,080	-				-2.0
3,795,080	-				-0.6
3,795,080	-				+0.6
3,795,080	-				-0.1
3,795,080	-				+0.4
3,795,080	-				+0.2
3,795,080	-				-1.0
3,795,080	-				-0.2
3,795,080	-				-0.2
3,795,080	-				-0.8
3,795,080	-				-0.6
3,795,080	-				-1.4
3,795,080	-				+0.4
3,795,081	+				-0.4
3,795,081	+				-0.6
3,795,081	+				+1.4
3,795,095	+				+0.0
3,795,096	-				-1.0
3,795,096	-				-0.7
3,795,096	-				-1.8
3,795,106	+				+0.0
3,795,106	+				+0.4
3,795,106	+				+1.2
3,795,106	+				+1.5
3,795,106	+				-0.6
3,795,107	-				-1.4
3,795,763	+				+1.4
3,795,763	+				-0.8
3,795,763	+				+0.5
3,795,763	+				-1.0
3,795,764	-				-3.1
3,795,764	-				-2.4
3,795,764	-				-0.1
3,795,764	-				-2.0
3,795,764	-				-0.1
3,795,791	+				-0.4
3,795,791	+				-1.1
3,795,791	+				+0.8
3,795,792	-				+0.0
3,795,792	-				-2.0
3,795,792	-				-3.2
3,795,792	-				-0.6
3,795,792	-				-0.4
3,795,792	-				-5.2
3,795,792	-				+1.7
3,795,872	+				-2.2
3,795,872	+				+0.1
3,795,938	+				-1.9
3,795,939	-				-1.9
3,796,057	+		ABIE53_003374	0.13	-1.7
3,796,057	+		ABIE53_003374	0.13	-0.8
3,796,057	+		ABIE53_003374	0.13	-0.2
3,796,058	-		ABIE53_003374	0.13	+1.4
3,796,058	-		ABIE53_003374	0.13	-1.6
3,796,058	-		ABIE53_003374	0.13	-1.1
3,796,058	-		ABIE53_003374	0.13	-1.2
3,796,058	-		ABIE53_003374	0.13	+0.6
3,796,058	-		ABIE53_003374	0.13	+0.0
3,796,058	-		ABIE53_003374	0.13	-1.7
3,796,096	+		ABIE53_003374	0.16	-2.0
3,796,096	+		ABIE53_003374	0.16	-2.2
3,796,097	-		ABIE53_003374	0.16	-2.3
3,796,097	-		ABIE53_003374	0.16	-1.8
3,796,097	-		ABIE53_003374	0.16	-1.2
3,796,097	-		ABIE53_003374	0.16	-2.7
3,796,097	-		ABIE53_003374	0.16	-1.3
3,796,179	+		ABIE53_003374	0.23	-2.8
3,796,179	+		ABIE53_003374	0.23	-2.1
3,796,180	-		ABIE53_003374	0.23	-0.4
3,796,180	-		ABIE53_003374	0.23	-3.4
3,796,236	+		ABIE53_003374	0.28	-2.8
3,796,253	-		ABIE53_003374	0.29	+0.0
3,796,253	-		ABIE53_003374	0.29	-2.5
3,796,258	+		ABIE53_003374	0.30	+0.4
3,796,258	+		ABIE53_003374	0.30	-2.0
3,796,258	+		ABIE53_003374	0.30	+0.4
3,796,258	+		ABIE53_003374	0.30	-1.1
3,796,258	+		ABIE53_003374	0.30	-0.2
3,796,258	+		ABIE53_003374	0.30	+0.4
3,796,258	+		ABIE53_003374	0.30	-2.2
3,796,258	+		ABIE53_003374	0.30	-3.9
3,796,259	-		ABIE53_003374	0.30	-3.4
3,796,259	-		ABIE53_003374	0.30	+0.0
3,796,259	-		ABIE53_003374	0.30	-5.6
3,796,259	-		ABIE53_003374	0.30	-0.2
3,796,259	-		ABIE53_003374	0.30	-1.0
3,796,259	-		ABIE53_003374	0.30	-1.1
3,796,259	-		ABIE53_003374	0.30	-0.6
3,796,259	-		ABIE53_003374	0.30	+0.4
3,796,259	-		ABIE53_003374	0.30	-2.7
3,796,279	+		ABIE53_003374	0.31	-3.2
3,796,279	+		ABIE53_003374	0.31	+0.8
3,796,279	+		ABIE53_003374	0.31	-0.4
3,796,279	+		ABIE53_003374	0.31	-2.7
3,796,279	+		ABIE53_003374	0.31	-1.3
3,796,279	+		ABIE53_003374	0.31	-0.4
3,796,279	+		ABIE53_003374	0.31	-4.6
3,796,279	+		ABIE53_003374	0.31	-3.4
3,796,279	+		ABIE53_003374	0.31	-0.8
3,796,280	-		ABIE53_003374	0.31	-4.4
3,796,280	-		ABIE53_003374	0.31	-1.3
3,796,280	-		ABIE53_003374	0.31	-2.5
3,796,280	-		ABIE53_003374	0.31	-3.0
3,796,280	-		ABIE53_003374	0.31	-2.4
3,796,280	-		ABIE53_003374	0.31	-1.2
3,796,280	-		ABIE53_003374	0.31	-4.5
3,796,280	-		ABIE53_003374	0.31	-1.7
3,796,280	-		ABIE53_003374	0.31	-0.4
3,796,309	+		ABIE53_003374	0.34	+1.4
3,796,309	+		ABIE53_003374	0.34	-0.4
3,796,309	+		ABIE53_003374	0.34	-2.8
3,796,309	+		ABIE53_003374	0.34	+0.0
3,796,309	+		ABIE53_003374	0.34	+0.8
3,796,310	-		ABIE53_003374	0.34	+4.7
3,796,310	-		ABIE53_003374	0.34	+0.0
3,796,310	-		ABIE53_003374	0.34	-0.4
3,796,310	-		ABIE53_003374	0.34	-1.6
3,796,310	-		ABIE53_003374	0.34	-1.4
3,796,321	+		ABIE53_003374	0.35	-3.0
3,796,322	-		ABIE53_003374	0.35	-0.4
3,796,660	+		ABIE53_003374	0.63	-0.1
3,796,660	+		ABIE53_003374	0.63	+0.0
3,796,661	-		ABIE53_003374	0.63	+0.7
3,796,780	+		ABIE53_003374	0.73	-3.7
3,796,780	+		ABIE53_003374	0.73	+0.0
3,796,780	+		ABIE53_003374	0.73	-1.0
3,796,780	+		ABIE53_003374	0.73	-2.9
3,796,780	+		ABIE53_003374	0.73	-2.0
3,796,780	+		ABIE53_003374	0.73	-1.2
3,796,781	-		ABIE53_003374	0.73	-2.0
3,796,781	-		ABIE53_003374	0.73	-1.3
3,796,781	-		ABIE53_003374	0.73	-2.4
3,796,781	-		ABIE53_003374	0.73	-1.4
3,796,781	-		ABIE53_003374	0.73	+0.4
3,796,781	-		ABIE53_003374	0.73	+0.8
3,796,781	-		ABIE53_003374	0.73	+1.4
3,796,882	+		ABIE53_003374	0.81	-0.6
3,796,882	+		ABIE53_003374	0.81	+0.4
3,796,883	-		ABIE53_003374	0.81	-1.2
3,796,883	-		ABIE53_003374	0.81	+0.4
3,796,981	+		ABIE53_003374	0.89	-4.4
3,796,981	+		ABIE53_003374	0.89	-1.4
3,796,982	-		ABIE53_003374	0.89	-3.5
3,796,982	-		ABIE53_003374	0.89	-1.3
3,796,982	-		ABIE53_003374	0.89	+0.0
3,796,982	-		ABIE53_003374	0.89	-2.4
3,796,982	-		ABIE53_003374	0.89	-1.4
3,796,999	+				-0.2
3,796,999	+				-0.6
3,796,999	+				-1.0
3,796,999	+				-3.8
3,796,999	+				-1.4
3,797,000	-				-1.9
3,797,000	-				+0.0
3,797,029	+				-3.0
3,797,029	+				-1.0
3,797,029	+				-1.1
3,797,029	+				+0.8
3,797,030	-				-3.7
3,797,030	-				-1.8
3,797,030	-				-3.6
3,797,030	-				-2.6
3,797,030	-				-2.8
3,797,030	-				-0.8
3,797,030	-				-1.0
3,797,089	+				-1.3
3,797,089	+				-2.2
3,797,089	+				-0.4
3,797,089	+				-1.7
3,797,090	-				-1.2
3,797,090	-				-2.8
3,797,090	-				-1.6
3,797,090	-				+0.0
3,797,090	-				-2.2
3,797,090	-				-0.2
3,797,090	-				-1.1
3,797,095	+				+0.0
3,797,095	+				-0.6
3,797,095	+				-2.6
3,797,095	+				-0.2
3,797,095	+				+1.4
3,797,095	+				+0.2
3,797,095	+				-1.3
3,797,095	+				+0.0
3,797,095	+				-1.0
3,797,096	-				-1.0
3,797,096	-				-0.5
3,797,096	-				-2.6
3,797,096	-				-1.0
3,797,096	-				-0.8
3,797,096	-				-1.4
3,797,135	+				-0.7
3,797,135	+				+0.0
3,797,135	+				-1.1
3,797,157	+				-1.9
3,797,157	+				-1.4
3,797,157	+				-1.7
3,797,157	+				-1.3
3,797,157	+				-1.2
3,797,157	+				-2.6
3,797,157	+				+1.8
3,797,157	+				+1.1
3,797,157	+				+0.4
3,797,157	+				-0.6
3,797,157	+				-1.0
3,797,158	-				-2.4
3,797,158	-				-0.4
3,797,158	-				-0.6
3,797,158	-				+1.8
3,797,158	-				-1.9
3,797,158	-				-1.4
3,797,158	-				-0.6
3,797,158	-				-0.2
3,797,158	-				+0.1
3,797,158	-				+0.0
3,797,158	-				-0.3
3,797,158	-				-0.2
3,797,158	-				+0.8
3,797,160	+				+0.4
3,797,160	+				-0.6
3,797,160	+				-0.3
3,797,160	+				+1.4
3,797,160	+				-1.2
3,797,161	-				+1.4
3,797,161	-				-0.6
3,797,161	-				+0.7
3,797,161	-				+0.3
3,797,427	+		ABIE53_003375	0.20	-1.0
3,797,427	+		ABIE53_003375	0.20	+4.3
3,797,428	-		ABIE53_003375	0.20	-1.0
3,797,428	-		ABIE53_003375	0.20	-0.1
3,797,470	+		ABIE53_003375	0.23	-1.7
3,797,470	+		ABIE53_003375	0.23	-2.3
3,797,471	-		ABIE53_003375	0.23	-1.5
3,797,471	-		ABIE53_003375	0.23	-0.2
3,797,471	-		ABIE53_003375	0.23	+0.0
3,797,471	-		ABIE53_003375	0.23	-0.1
3,797,525	-		ABIE53_003375	0.27	-1.1
3,797,610	+		ABIE53_003375	0.33	+0.1
3,797,610	+		ABIE53_003375	0.33	-1.2
3,797,611	-		ABIE53_003375	0.33	+0.8
3,797,611	-		ABIE53_003375	0.33	+2.0
3,797,611	-		ABIE53_003375	0.33	-0.4
3,797,611	-		ABIE53_003375	0.33	+0.5
3,797,694	-		ABIE53_003375	0.39	+1.9
3,797,694	-		ABIE53_003375	0.39	-0.6
3,797,705	+		ABIE53_003375	0.40	-2.9
3,797,705	+		ABIE53_003375	0.40	-0.8
3,797,706	-		ABIE53_003375	0.40	-0.6
3,797,706	-		ABIE53_003375	0.40	+0.9
3,797,792	+		ABIE53_003375	0.47	-0.8
3,797,793	-		ABIE53_003375	0.47	-1.0
3,797,793	-		ABIE53_003375	0.47	+0.5
3,797,793	-		ABIE53_003375	0.47	-0.6
3,797,816	+		ABIE53_003375	0.48	+0.0
3,797,816	+		ABIE53_003375	0.48	+2.4
3,797,816	+		ABIE53_003375	0.48	+4.7
3,797,817	-		ABIE53_003375	0.48	+0.0
3,797,825	+		ABIE53_003375	0.49	+0.4
3,797,825	+		ABIE53_003375	0.49	-0.4
3,797,825	+		ABIE53_003375	0.49	-0.5
3,797,826	-		ABIE53_003375	0.49	+1.4