Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003351

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
3,773,551	+				-1.5
3,773,551	+				+0.5
3,773,552	-				+3.2
3,773,594	-				-1.9
3,773,640	-				-1.7
3,773,693	+				-1.6
3,773,773	+		ABIE53_003350	0.11	-1.0
3,773,774	-		ABIE53_003350	0.11	-0.8
3,773,774	-		ABIE53_003350	0.11	-3.4
3,773,807	-		ABIE53_003350	0.15	-2.1
3,773,807	-		ABIE53_003350	0.15	+1.8
3,773,807	-		ABIE53_003350	0.15	-0.7
3,773,807	-		ABIE53_003350	0.15	-1.7
3,773,821	+		ABIE53_003350	0.17	-0.7
3,773,822	-		ABIE53_003350	0.17	-1.9
3,773,822	-		ABIE53_003350	0.17	-1.1
3,773,852	+		ABIE53_003350	0.20	+0.0
3,773,853	-		ABIE53_003350	0.20	-0.7
3,773,853	-		ABIE53_003350	0.20	-1.5
3,773,923	+		ABIE53_003350	0.29	-0.5
3,773,923	+		ABIE53_003350	0.29	-1.4
3,773,923	+		ABIE53_003350	0.29	-2.3
3,773,923	+		ABIE53_003350	0.29	-1.7
3,773,923	+		ABIE53_003350	0.29	+0.0
3,773,924	-		ABIE53_003350	0.29	-2.3
3,773,924	-		ABIE53_003350	0.29	-3.6
3,773,924	-		ABIE53_003350	0.29	-2.4
3,773,948	+		ABIE53_003350	0.32	-0.2
3,773,948	+		ABIE53_003350	0.32	-3.0
3,773,948	+		ABIE53_003350	0.32	-1.1
3,773,948	+		ABIE53_003350	0.32	-1.7
3,773,948	+		ABIE53_003350	0.32	+0.8
3,773,948	+		ABIE53_003350	0.32	-0.8
3,773,949	-		ABIE53_003350	0.32	-0.7
3,773,949	-		ABIE53_003350	0.32	-2.8
3,773,949	-		ABIE53_003350	0.32	+1.0
3,773,949	-		ABIE53_003350	0.32	-1.7
3,773,949	-		ABIE53_003350	0.32	-2.8
3,773,949	-		ABIE53_003350	0.32	+0.0
3,773,949	-		ABIE53_003350	0.32	-2.0
3,773,949	-		ABIE53_003350	0.32	-1.2
3,773,949	-		ABIE53_003350	0.32	-2.0
3,773,949	-		ABIE53_003350	0.32	-0.7
3,773,949	-		ABIE53_003350	0.32	-0.9
3,774,031	+		ABIE53_003350	0.41	-2.4
3,774,031	+		ABIE53_003350	0.41	-2.9
3,774,031	+		ABIE53_003350	0.41	-1.2
3,774,031	+		ABIE53_003350	0.41	-2.0
3,774,031	+		ABIE53_003350	0.41	-1.9
3,774,031	+		ABIE53_003350	0.41	-0.5
3,774,031	+		ABIE53_003350	0.41	+0.3
3,774,031	+		ABIE53_003350	0.41	+0.8
3,774,031	+		ABIE53_003350	0.41	-1.1
3,774,031	+		ABIE53_003350	0.41	-0.9
3,774,031	+		ABIE53_003350	0.41	-1.6
3,774,031	+		ABIE53_003350	0.41	-0.8
3,774,031	+		ABIE53_003350	0.41	-0.3
3,774,031	+		ABIE53_003350	0.41	-2.1
3,774,031	+		ABIE53_003350	0.41	-0.7
3,774,032	-		ABIE53_003350	0.41	+0.4
3,774,032	-		ABIE53_003350	0.41	-3.0
3,774,032	-		ABIE53_003350	0.41	-0.8
3,774,032	-		ABIE53_003350	0.41	-0.5
3,774,032	-		ABIE53_003350	0.41	-0.7
3,774,032	-		ABIE53_003350	0.41	-3.0
3,774,032	-		ABIE53_003350	0.41	-2.6
3,774,032	-		ABIE53_003350	0.41	-0.5
3,774,032	-		ABIE53_003350	0.41	-0.2
3,774,033	-		ABIE53_003350	0.42	-1.0
3,774,129	+		ABIE53_003350	0.53	-1.7
3,774,147	+		ABIE53_003350	0.55	-1.1
3,774,148	-		ABIE53_003350	0.55	-3.0
3,774,148	-		ABIE53_003350	0.55	-0.7
3,774,190	+		ABIE53_003350	0.60	-2.0
3,774,191	-		ABIE53_003350	0.60	-1.2
3,774,191	-		ABIE53_003350	0.60	-0.2
3,774,265	+		ABIE53_003350	0.69	+0.0
3,774,265	+		ABIE53_003350	0.69	+0.8
3,774,265	+		ABIE53_003350	0.69	+1.3
3,774,265	+		ABIE53_003350	0.69	-0.8
3,774,265	+		ABIE53_003350	0.69	+0.0
3,774,265	+		ABIE53_003350	0.69	+0.8
3,774,265	+		ABIE53_003350	0.69	-0.9
3,774,265	+		ABIE53_003350	0.69	-1.2
3,774,265	+		ABIE53_003350	0.69	-1.1
3,774,265	+		ABIE53_003350	0.69	-0.9
3,774,265	+		ABIE53_003350	0.69	-2.2
3,774,266	-		ABIE53_003350	0.69	-2.0
3,774,266	-		ABIE53_003350	0.69	-0.6
3,774,266	-		ABIE53_003350	0.69	-3.8
3,774,266	-		ABIE53_003350	0.69	-2.5
3,774,266	-		ABIE53_003350	0.69	-0.7
3,774,266	-		ABIE53_003350	0.69	-0.2
3,774,266	-		ABIE53_003350	0.69	-0.9
3,774,266	-		ABIE53_003350	0.69	-0.5
3,774,268	+		ABIE53_003350	0.69	+0.2
3,774,268	+		ABIE53_003350	0.69	+0.3
3,774,268	+		ABIE53_003350	0.69	-2.0
3,774,268	+		ABIE53_003350	0.69	+0.8
3,774,269	-		ABIE53_003350	0.69	-2.7
3,774,269	-		ABIE53_003350	0.69	-1.3
3,774,269	-		ABIE53_003350	0.69	+0.0
3,774,269	-		ABIE53_003350	0.69	-2.1
3,774,269	-		ABIE53_003350	0.69	-3.1
3,774,269	-		ABIE53_003350	0.69	-0.5
3,774,503	-				-1.7
3,774,503	-				-0.7
3,774,503	-				+0.8
3,774,503	-				+1.3
3,774,503	-				-0.5
3,774,503	-				-1.0
3,774,503	-				-4.7
3,774,549	+				-3.7
3,774,549	+				-1.0
3,774,549	+				-2.7
3,774,549	+				-1.6
3,774,550	-				+0.8
3,774,550	-				-0.5
3,774,550	-				-2.5
3,774,555	+				-0.7
3,774,555	+				-0.7
3,774,555	+				+0.0
3,774,555	+				-1.2
3,774,555	+				-1.6
3,774,555	+				+0.0
3,774,556	-				-1.2
3,774,556	-				+0.8
3,774,556	-				-4.5
3,774,556	-				-1.0
3,774,556	-				+1.6
3,774,556	-				-3.1
3,776,087	-				+0.0
3,776,087	-				+2.3
3,776,087	-				-1.9
3,776,087	-				+2.0
3,776,087	-				+2.3
3,776,087	-				-0.8
3,776,087	-				+1.3
3,776,087	-				-0.7
3,776,087	-				-2.1
3,776,087	-				+1.1
3,776,087	-				-0.8
3,776,087	-				+2.2
3,776,087	-				+0.2
3,776,087	-				+1.3
3,776,090	-				+0.6
3,776,090	-				+1.3
3,776,090	-				-2.2
3,776,090	-				+0.8
3,776,090	-				+0.8
3,776,090	-				+1.3
3,776,090	-				+3.2
3,776,090	-				-0.8
3,776,090	-				+0.1
3,776,090	-				-0.2
3,776,090	-				+0.9
3,776,090	-				+0.6
3,776,090	-				-0.2
3,776,090	-				-0.4
3,776,090	-				+0.3
3,776,090	-				-0.3
3,776,090	-				-1.0
3,776,090	-				+1.9
3,776,090	-				-1.8
3,776,091	+				+0.0
3,776,091	+				+1.5
3,776,091	+				+0.1
3,776,091	+				-0.8
3,776,091	+				+0.4
3,776,091	+				-1.9
3,776,091	+				+0.8
3,776,092	-				-0.5
3,776,092	-				-0.4
3,776,092	-				+0.0
3,776,092	-				+2.4
3,776,092	-				+2.3
3,776,092	-				+1.3
3,776,092	-				+0.2
3,776,092	-				-0.6
3,776,092	-				-1.5
3,776,092	-				+0.8
3,776,092	-				+0.3
3,776,092	-				-2.0
3,776,092	-				-0.6
3,776,092	-				+1.2
3,776,147	+				+1.9
3,776,147	+				-0.5
3,776,148	-				-0.2
3,776,907	+				-0.2
3,776,907	+				-0.5
3,776,908	-				+0.0
3,776,935	+				-1.7
3,776,935	+				-0.7
3,776,936	-				+1.6
3,776,936	-				-0.5