Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002783

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
3,131,619	-				-0.7
3,131,619	-				-0.4
3,131,778	-		ABIE53_002782	0.30	-0.4
3,131,955	-		ABIE53_002782	0.64	-2.2
3,131,955	-		ABIE53_002782	0.64	-0.6
3,132,027	-		ABIE53_002782	0.77	-0.6
3,132,040	-		ABIE53_002782	0.80	-0.8
3,132,040	-		ABIE53_002782	0.80	-1.0
3,132,040	-		ABIE53_002782	0.80	-0.4
3,132,040	-		ABIE53_002782	0.80	-3.0
3,132,040	-		ABIE53_002782	0.80	-0.8
3,132,040	-		ABIE53_002782	0.80	-2.1
3,132,040	-		ABIE53_002782	0.80	-1.0
3,132,040	-		ABIE53_002782	0.80	+0.2
3,132,040	-		ABIE53_002782	0.80	-3.3
3,132,040	-		ABIE53_002782	0.80	-2.3
3,132,040	-		ABIE53_002782	0.80	-4.2
3,132,040	-		ABIE53_002782	0.80	+0.6
3,132,058	-		ABIE53_002782	0.83	-1.7
3,132,058	-		ABIE53_002782	0.83	-1.4
3,132,058	-		ABIE53_002782	0.83	-0.4
3,132,058	-		ABIE53_002782	0.83	-1.8
3,132,058	-		ABIE53_002782	0.83	-2.2
3,132,058	-		ABIE53_002782	0.83	-2.1
3,132,092	-		ABIE53_002782	0.89	-0.4
3,132,148	-				-0.4
3,132,148	-				-2.3
3,132,148	-				-1.7
3,132,148	-				-1.1
3,132,148	-				-0.8
3,132,148	-				-1.1
3,132,148	-				-1.9
3,132,148	-				-0.6
3,132,148	-				-1.1
3,132,148	-				-2.1
3,132,148	-				-1.9
3,132,148	-				-0.1
3,132,148	-				-1.8
3,132,148	-				-3.3
3,132,148	-				-0.8
3,132,148	-				-2.1
3,132,148	-				-0.1
3,132,148	-				-0.1
3,132,148	-				+0.2
3,132,148	-				-0.1
3,132,148	-				-2.2
3,132,148	-				-0.4
3,132,148	-				-2.3
3,132,148	-				+3.5
3,132,152	-				-2.7
3,132,152	-				+1.2
3,132,152	-				-2.1
3,132,152	-				-0.6
3,132,152	-				+2.5
3,132,152	-				-2.7
3,132,152	-				+1.8
3,132,194	-				-1.5
3,132,214	+				+0.5
3,132,214	+				+2.2
3,132,214	+				+3.7
3,132,215	-				-0.0
3,132,215	-				-0.1
3,132,215	-				+4.0
3,132,215	-				-1.4
3,132,238	+				-1.2
3,132,238	+				-1.7
3,132,238	+				+0.6
3,132,238	+				-0.8
3,132,238	+				-2.2
3,132,238	+				-1.1
3,132,238	+				-1.6
3,132,238	+				-1.6
3,132,238	+				+1.2
3,132,238	+				-0.8
3,132,238	+				+1.3
3,132,238	+				+0.2
3,132,238	+				-0.7
3,132,238	+				-1.5
3,132,238	+				-2.3
3,132,239	-				-1.1
3,132,239	-				+0.6
3,132,239	-				+0.9
3,132,239	-				-0.5
3,132,239	-				+3.2
3,132,239	-				-1.7
3,132,239	-				-1.0
3,132,239	-				+1.2
3,132,242	+				-2.5
3,132,242	+				-2.2
3,132,242	+				-2.4
3,132,243	-				-0.4
3,132,243	-				-0.8
3,132,243	-				-0.8
3,132,243	-				-1.5
3,132,243	-				-1.1
3,132,243	-				-1.3
3,132,243	-				-0.1
3,132,243	-				-1.1
3,132,243	-				-2.5
3,132,243	-				-0.4
3,132,243	-				+3.8
3,132,278	+				+0.2
3,132,279	-				+1.2
3,132,279	-				-0.1
3,132,279	-				-2.1
3,132,279	-				-2.2
3,132,279	-				-1.5
3,132,279	-				-1.8
3,132,374	+		ABIE53_002783	0.19	-1.7
3,132,374	+		ABIE53_002783	0.19	+0.2
3,132,375	-		ABIE53_002783	0.20	-1.1
3,132,375	-		ABIE53_002783	0.20	-1.6
3,132,375	-		ABIE53_002783	0.20	-0.4
3,132,375	-		ABIE53_002783	0.20	-0.6
3,132,375	-		ABIE53_002783	0.20	+2.2
3,132,548	-		ABIE53_002783	0.54	+0.2
3,132,579	-		ABIE53_002783	0.61	-0.4
3,132,826	+				-0.7
3,132,826	+				-1.5
3,132,826	+				+2.2
3,132,826	+				+0.1
3,132,826	+				+2.2
3,132,826	+				+0.3
3,132,827	-				+0.3
3,132,827	-				+0.8
3,132,827	-				+0.7
3,132,827	-				-0.4
3,132,827	-				+1.6
3,132,827	-				-0.8
3,132,865	-				-0.9
3,132,865	-				+0.2
3,132,866	+				-1.6
3,132,866	+				-0.4
3,132,866	+				-0.4
3,132,866	+				-0.9
3,132,866	+				+0.6
3,132,866	+				+2.2
3,132,866	+				+0.2
3,132,866	+				+0.5
3,132,866	+				-0.8
3,132,866	+				-0.0
3,132,866	+				+0.3
3,132,867	-				-3.2
3,132,867	-				+0.5
3,132,867	-				-0.4
3,132,867	-				-0.5
3,132,867	-				-1.6
3,132,867	-				-1.8
3,132,867	-				-1.0
3,132,867	-				-0.1
3,132,867	-				-2.9
3,132,867	-				+0.8
3,132,867	-				-0.1
3,132,867	-				-2.0
3,133,022	+		ABIE53_002784	0.34	+3.3
3,133,022	+		ABIE53_002784	0.34	-0.1
3,133,022	+		ABIE53_002784	0.34	-1.4
3,133,022	+		ABIE53_002784	0.34	-3.1
3,133,023	-		ABIE53_002784	0.35	-0.2
3,133,023	-		ABIE53_002784	0.35	+1.0
3,133,023	-		ABIE53_002784	0.35	-1.5
3,133,115	+		ABIE53_002784	0.73	-1.7
3,133,115	+		ABIE53_002784	0.73	+0.8
3,133,115	+		ABIE53_002784	0.73	+3.1
3,133,115	+		ABIE53_002784	0.73	-0.6
3,133,115	+		ABIE53_002784	0.73	+1.5
3,133,115	+		ABIE53_002784	0.73	-0.6
3,133,116	-		ABIE53_002784	0.73	-2.3
3,133,116	-		ABIE53_002784	0.73	+0.1
3,133,116	-		ABIE53_002784	0.73	+1.2
3,133,116	-		ABIE53_002784	0.73	-0.4
3,133,116	-		ABIE53_002784	0.73	-2.8
3,133,116	-		ABIE53_002784	0.73	-2.0
3,133,116	-		ABIE53_002784	0.73	+2.6
3,133,116	-		ABIE53_002784	0.73	+1.2
3,133,157	+				+0.9
3,133,157	+				-0.9
3,133,158	-				+0.7
3,133,158	-				-0.2
3,133,158	-				-0.8
3,133,158	-				-1.7
3,133,158	-				-0.1
3,133,158	-				-0.6
3,133,165	+				-1.0
3,133,165	+				-2.6
3,133,165	+				+0.5
3,133,165	+				-0.4
3,133,166	-				-1.1
3,133,166	-				+1.0
3,133,204	+				-0.8
3,133,204	+				+0.7
3,133,204	+				-0.2
3,133,204	+				-0.9
3,133,204	+				-2.2
3,133,204	+				+0.3
3,133,205	-				-2.2
3,133,205	-				+0.4
3,133,205	-				-0.6
3,133,208	+				-0.1
3,133,208	+				+0.3
3,133,208	+				+2.6
3,133,208	+				+0.0
3,133,208	+				+0.5
3,133,208	+				+0.5
3,133,208	+				+0.6
3,133,208	+				-0.4
3,133,209	-				-1.3
3,133,209	-				+1.0
3,133,209	-				-1.2
3,133,209	-				-0.1
3,133,209	-				-2.3
3,133,209	-				-3.3
3,133,209	-				-0.4
3,133,209	-				-1.1
3,133,209	-				-1.4
3,133,209	-				-1.7
3,133,209	-				+0.4
3,133,222	-				+0.8
3,133,224	+				+0.5
3,133,224	+				-0.2
3,133,225	-				-0.8
3,133,225	-				+0.6
3,133,242	+				-1.0
3,133,243	-				-2.3
3,133,245	-				+0.6
3,133,282	+				-0.7
3,133,282	+				+1.6
3,133,282	+				+1.9
3,133,283	-				-0.4
3,133,283	-				-1.6
3,133,283	-				-0.6
3,133,283	-				+0.2
3,133,360	+				+1.5
3,133,360	+				+0.3
3,133,360	+				-2.3
3,133,360	+				+0.9
3,133,361	-				+0.1
3,133,361	-				-0.1
3,133,361	-				-2.6
3,133,361	-				+0.8
3,133,368	+				-0.6
3,133,368	+				-0.8
3,133,369	-				-0.8
3,133,369	-				+2.2
3,133,369	-				-0.4
3,133,369	-				-0.7
3,133,378	+				-0.3
3,133,378	+				+0.9
3,133,378	+				+0.6
3,133,378	+				-0.6
3,133,378	+				-0.5
3,133,378	+				-0.5
3,133,378	+				-1.4
3,133,379	-				-1.3
3,133,379	-				-0.6
3,133,379	-				-0.1
3,133,379	-				+0.1
3,133,379	-				-0.9
3,133,379	-				-1.4
3,133,379	-				-0.1
3,133,379	-				-0.4
3,133,379	-				+1.2
3,133,404	+				-1.5
3,133,404	+				+1.0
3,133,404	+				+0.0
3,133,404	+				-0.1
3,133,404	+				-1.8
3,133,404	+				-0.4
3,133,404	+				+1.2
3,133,404	+				-1.7
3,133,404	+				+0.5
3,133,404	+				-1.8
3,133,404	+				+0.2
3,133,404	+				+0.2
3,133,405	-				+0.6
3,133,405	-				-1.0
3,133,405	-				-1.9
3,133,405	-				-0.6
3,133,405	-				-1.7
3,133,405	-				-0.5
3,133,405	-				+1.2
3,133,405	-				+0.1
3,133,405	-				-0.7
3,133,405	-				+0.8
3,133,405	-				-1.9
3,133,419	+				-1.4
3,133,419	+				-2.0
3,133,419	+				-0.6
3,133,419	+				-1.3
3,133,420	-				-0.0
3,133,420	-				-0.7
3,133,420	-				-1.9
3,133,420	-				-2.0
3,133,420	-				-0.4
3,133,420	-				-0.5
3,133,420	-				-0.5
3,133,420	-				-3.0
3,133,422	+				-0.4
3,133,422	+				-0.5
3,133,422	+				-0.8
3,133,431	+				-1.2
3,133,431	+				+0.4
3,133,431	+				-1.0
3,133,432	-				-0.4
3,133,432	-				-1.0
3,133,432	-				-1.5
3,133,432	-				-1.3
3,133,432	-				-1.7
3,133,533	+		ABIE53_002785	0.16	-2.1
3,133,533	+		ABIE53_002785	0.16	+0.1
3,133,533	+		ABIE53_002785	0.16	+1.6
3,133,533	+		ABIE53_002785	0.16	-1.6
3,133,533	+		ABIE53_002785	0.16	+1.1
3,133,533	+		ABIE53_002785	0.16	+0.8
3,133,533	+		ABIE53_002785	0.16	-0.6
3,133,533	+		ABIE53_002785	0.16	-2.6
3,133,533	+		ABIE53_002785	0.16	+0.6
3,133,533	+		ABIE53_002785	0.16	-2.5
3,133,533	+		ABIE53_002785	0.16	+1.2
3,133,533	+		ABIE53_002785	0.16	-1.1
3,133,534	-		ABIE53_002785	0.16	-0.7
3,133,534	-		ABIE53_002785	0.16	+0.5
3,133,534	-		ABIE53_002785	0.16	-0.1
3,133,534	-		ABIE53_002785	0.16	-0.1
3,133,534	-		ABIE53_002785	0.16	-1.7
3,133,534	-		ABIE53_002785	0.16	-1.3
3,133,534	-		ABIE53_002785	0.16	-0.9
3,133,534	-		ABIE53_002785	0.16	-0.6
3,133,534	-		ABIE53_002785	0.16	-2.0
3,133,534	-		ABIE53_002785	0.16	-1.3
3,133,534	-		ABIE53_002785	0.16	+3.6
3,133,554	+		ABIE53_002785	0.20	+0.5
3,133,554	+		ABIE53_002785	0.20	-0.2
3,133,554	+		ABIE53_002785	0.20	-0.4
3,133,554	+		ABIE53_002785	0.20	+0.3
3,133,554	+		ABIE53_002785	0.20	-0.7
3,133,554	+		ABIE53_002785	0.20	-1.0
3,133,554	+		ABIE53_002785	0.20	+0.2
3,133,555	-		ABIE53_002785	0.20	-2.1
3,133,555	-		ABIE53_002785	0.20	-0.5
3,133,555	-		ABIE53_002785	0.20	+4.1
3,133,555	-		ABIE53_002785	0.20	-0.8
3,133,555	-		ABIE53_002785	0.20	-0.8
3,133,555	-		ABIE53_002785	0.20	-0.6
3,133,555	-		ABIE53_002785	0.20	-0.4
3,133,555	-		ABIE53_002785	0.20	+1.7
3,133,555	-		ABIE53_002785	0.20	+0.3
3,133,555	-		ABIE53_002785	0.20	+1.1
3,133,555	-		ABIE53_002785	0.20	+0.7
3,133,555	-		ABIE53_002785	0.20	-1.5
3,133,555	-		ABIE53_002785	0.20	-0.6
3,133,555	-		ABIE53_002785	0.20	-1.8
3,133,555	-		ABIE53_002785	0.20	+0.3
3,133,555	-		ABIE53_002785	0.20	-0.4
3,133,563	+		ABIE53_002785	0.22	-1.1
3,133,563	+		ABIE53_002785	0.22	-0.3
3,133,566	+		ABIE53_002785	0.22	-0.4
3,133,567	-		ABIE53_002785	0.22	-3.0
3,133,567	-		ABIE53_002785	0.22	+0.6
3,133,567	-		ABIE53_002785	0.22	-0.1
3,133,576	-		ABIE53_002785	0.24	-0.0
3,133,576	-		ABIE53_002785	0.24	+3.2
3,133,605	+		ABIE53_002785	0.30	-1.5
3,133,605	+		ABIE53_002785	0.30	-2.7
3,133,605	+		ABIE53_002785	0.30	-0.5
3,133,605	+		ABIE53_002785	0.30	+3.8
3,133,605	+		ABIE53_002785	0.30	-0.1
3,133,605	+		ABIE53_002785	0.30	+2.6
3,133,605	+		ABIE53_002785	0.30	-2.7
3,133,605	+		ABIE53_002785	0.30	-0.5
3,133,605	+		ABIE53_002785	0.30	+0.6
3,133,605	+		ABIE53_002785	0.30	-1.7
3,133,605	+		ABIE53_002785	0.30	+1.4
3,133,605	+		ABIE53_002785	0.30	+1.7
3,133,606	-		ABIE53_002785	0.30	-1.7
3,133,606	-		ABIE53_002785	0.30	-0.3
3,133,606	-		ABIE53_002785	0.30	+0.5
3,133,606	-		ABIE53_002785	0.30	-1.5
3,133,606	-		ABIE53_002785	0.30	+1.0
3,133,606	-		ABIE53_002785	0.30	-1.3
3,133,606	-		ABIE53_002785	0.30	-0.1
3,133,606	-		ABIE53_002785	0.30	-0.7
3,133,606	-		ABIE53_002785	0.30	-2.9
3,133,606	-		ABIE53_002785	0.30	-0.5
3,133,606	-		ABIE53_002785	0.30	+0.8
3,133,606	-		ABIE53_002785	0.30	+1.2
3,133,606	-		ABIE53_002785	0.30	-2.0
3,133,614	+		ABIE53_002785	0.31	+0.2
3,133,614	+		ABIE53_002785	0.31	-0.6
3,133,615	-		ABIE53_002785	0.32	-1.1
3,133,615	-		ABIE53_002785	0.32	+2.2
3,133,623	+		ABIE53_002785	0.33	+0.2
3,133,623	+		ABIE53_002785	0.33	-0.8
3,133,623	+		ABIE53_002785	0.33	-1.5
3,133,623	+		ABIE53_002785	0.33	-1.8
3,133,623	+		ABIE53_002785	0.33	-0.1
3,133,623	+		ABIE53_002785	0.33	-0.3
3,133,624	-		ABIE53_002785	0.33	-0.4
3,133,624	-		ABIE53_002785	0.33	-0.3
3,133,624	-		ABIE53_002785	0.33	-0.4
3,133,626	+		ABIE53_002785	0.34	+1.4
3,133,639	-		ABIE53_002785	0.36	+2.2
3,133,641	+		ABIE53_002785	0.37	+1.3
3,133,641	+		ABIE53_002785	0.37	+0.2
3,133,641	+		ABIE53_002785	0.37	+1.2
3,133,642	-		ABIE53_002785	0.37	+1.2
3,133,642	-		ABIE53_002785	0.37	-0.4
3,133,642	-		ABIE53_002785	0.37	-0.1
3,133,642	-		ABIE53_002785	0.37	-1.4
3,133,642	-		ABIE53_002785	0.37	-0.8
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3,133,659	+		ABIE53_002785	0.40	+0.4
3,133,659	+		ABIE53_002785	0.40	-0.1
3,133,660	-		ABIE53_002785	0.40	-1.2
3,133,660	-		ABIE53_002785	0.40	+0.3
3,133,660	-		ABIE53_002785	0.40	-1.1
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3,133,663	-		ABIE53_002785	0.41	-0.8
3,133,663	-		ABIE53_002785	0.41	+1.2
3,133,663	-		ABIE53_002785	0.41	+0.4
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3,133,675	-		ABIE53_002785	0.43	+0.2
3,133,683	+		ABIE53_002785	0.45	+1.9
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3,133,699	-		ABIE53_002785	0.48	+0.2
3,133,699	-		ABIE53_002785	0.48	+0.9
3,133,699	-		ABIE53_002785	0.48	-0.6
3,133,699	-		ABIE53_002785	0.48	-1.7
3,133,699	-		ABIE53_002785	0.48	-2.0
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3,133,701	+		ABIE53_002785	0.48	-0.8
3,133,701	+		ABIE53_002785	0.48	-0.8
3,133,701	+		ABIE53_002785	0.48	+0.4
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3,133,702	-		ABIE53_002785	0.48	+0.7
3,133,702	-		ABIE53_002785	0.48	-0.0
3,133,702	-		ABIE53_002785	0.48	-2.3
3,133,702	-		ABIE53_002785	0.48	-2.7
3,133,702	-		ABIE53_002785	0.48	+0.6
3,133,702	-		ABIE53_002785	0.48	+0.4
3,133,702	-		ABIE53_002785	0.48	-0.6
3,133,702	-		ABIE53_002785	0.48	-0.4