Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002673

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
3,010,733	+		ABIE53_002672	0.38	-1.9
3,010,733	+		ABIE53_002672	0.38	-1.4
3,010,733	+		ABIE53_002672	0.38	-1.1
3,010,733	+		ABIE53_002672	0.38	-2.5
3,010,733	+		ABIE53_002672	0.38	+1.2
3,010,734	-		ABIE53_002672	0.38	-0.1
3,010,734	-		ABIE53_002672	0.38	-1.6
3,010,970	+		ABIE53_002672	0.56	+0.6
3,010,970	+		ABIE53_002672	0.56	-0.1
3,010,970	+		ABIE53_002672	0.56	+1.2
3,010,970	+		ABIE53_002672	0.56	-2.7
3,010,970	+		ABIE53_002672	0.56	+1.7
3,010,970	+		ABIE53_002672	0.56	-1.3
3,010,970	+		ABIE53_002672	0.56	-0.6
3,010,970	+		ABIE53_002672	0.56	-1.0
3,010,971	-		ABIE53_002672	0.56	-2.3
3,010,971	-		ABIE53_002672	0.56	+0.0
3,010,971	-		ABIE53_002672	0.56	-0.5
3,010,971	-		ABIE53_002672	0.56	-0.7
3,010,971	-		ABIE53_002672	0.56	-2.1
3,010,971	-		ABIE53_002672	0.56	-1.6
3,011,115	-		ABIE53_002672	0.68	-0.7
3,011,115	-		ABIE53_002672	0.68	-0.6
3,011,159	+		ABIE53_002672	0.71	-0.0
3,011,159	+		ABIE53_002672	0.71	-1.5
3,011,159	+		ABIE53_002672	0.71	-2.1
3,011,159	+		ABIE53_002672	0.71	-2.1
3,011,160	-		ABIE53_002672	0.71	-0.1
3,011,160	-		ABIE53_002672	0.71	+1.2
3,011,189	+		ABIE53_002672	0.73	+0.2
3,011,195	+		ABIE53_002672	0.74	-2.1
3,011,291	+		ABIE53_002672	0.81	-0.6
3,011,291	+		ABIE53_002672	0.81	+1.1
3,011,292	-		ABIE53_002672	0.81	+1.9
3,011,292	-		ABIE53_002672	0.81	-2.1
3,011,395	+		ABIE53_002672	0.89	-1.9
3,011,395	+		ABIE53_002672	0.89	-1.8
3,011,395	+		ABIE53_002672	0.89	-0.6
3,011,395	+		ABIE53_002672	0.89	+0.6
3,011,396	-		ABIE53_002672	0.89	-1.0
3,011,396	-		ABIE53_002672	0.89	-1.5
3,011,399	+		ABIE53_002672	0.90	-1.2
3,011,399	+		ABIE53_002672	0.90	-2.6
3,011,441	+				+0.2
3,011,441	+				+0.2
3,011,441	+				-1.5
3,011,442	-				-1.1
3,011,442	-				-1.8
3,011,477	+				-1.4
3,011,478	-				-3.0
3,011,529	-				-2.6
3,011,529	-				-0.6
3,011,529	-				-0.1
3,011,691	-				-1.8
3,011,772	-				-0.6
3,011,774	+				+2.2
3,011,774	+				+0.0
3,011,774	+				-1.1
3,011,774	+				-0.9
3,011,774	+				-1.1
3,011,774	+				-0.8
3,011,774	+				+2.2
3,011,775	-				-2.0
3,011,775	-				-1.3
3,011,775	-				-2.3
3,011,775	-				-0.6
3,011,860	+				-1.0
3,011,861	-				+0.6
3,011,970	+		ABIE53_002673	0.11	+0.6
3,011,971	-		ABIE53_002673	0.11	-1.9
3,011,979	+		ABIE53_002673	0.11	-0.8
3,011,979	+		ABIE53_002673	0.11	+0.4
3,011,979	+		ABIE53_002673	0.11	+2.4
3,011,979	+		ABIE53_002673	0.11	-1.8
3,011,980	-		ABIE53_002673	0.11	+0.6
3,011,980	-		ABIE53_002673	0.11	+1.4
3,011,980	-		ABIE53_002673	0.11	+2.6
3,011,980	-		ABIE53_002673	0.11	-1.1
3,012,104	+		ABIE53_002673	0.16	+1.1
3,012,104	+		ABIE53_002673	0.16	-1.0
3,012,105	-		ABIE53_002673	0.16	-0.1
3,012,126	+		ABIE53_002673	0.17	-0.9
3,012,126	+		ABIE53_002673	0.17	-2.0
3,012,128	+		ABIE53_002673	0.17	-1.8
3,012,170	+		ABIE53_002673	0.19	+2.2
3,012,171	-		ABIE53_002673	0.19	-1.4
3,012,224	+		ABIE53_002673	0.21	+0.4
3,012,225	-		ABIE53_002673	0.21	-0.1
3,012,225	-		ABIE53_002673	0.21	-1.0
3,012,248	+		ABIE53_002673	0.22	-0.1
3,012,249	-		ABIE53_002673	0.22	-1.8
3,012,275	+		ABIE53_002673	0.23	+0.1
3,012,441	-		ABIE53_002673	0.29	-0.1
3,012,456	-		ABIE53_002673	0.30	-3.3
3,012,456	-		ABIE53_002673	0.30	-0.9
3,012,482	+		ABIE53_002673	0.31	+0.3
3,012,483	-		ABIE53_002673	0.31	-1.1
3,012,483	-		ABIE53_002673	0.31	-1.9
3,012,513	+		ABIE53_002673	0.32	-0.8
3,012,513	+		ABIE53_002673	0.32	-1.8
3,012,518	+		ABIE53_002673	0.32	-0.5
3,012,519	-		ABIE53_002673	0.32	-0.1
3,012,519	-		ABIE53_002673	0.32	+0.6
3,012,531	-		ABIE53_002673	0.32	+1.8
3,012,588	-		ABIE53_002673	0.35	+0.4
3,012,588	-		ABIE53_002673	0.35	+0.2
3,012,706	-		ABIE53_002673	0.39	-1.3
3,012,707	+		ABIE53_002673	0.39	+1.1
3,012,707	+		ABIE53_002673	0.39	-0.3
3,012,707	+		ABIE53_002673	0.39	+0.5
3,012,708	-		ABIE53_002673	0.39	-1.5
3,012,708	-		ABIE53_002673	0.39	-2.6
3,012,708	-		ABIE53_002673	0.39	+2.2
3,012,708	-		ABIE53_002673	0.39	-0.1
3,012,708	-		ABIE53_002673	0.39	+1.2
3,012,708	-		ABIE53_002673	0.39	-0.4
3,012,711	+		ABIE53_002673	0.39	-1.0
3,012,711	+		ABIE53_002673	0.39	+1.1
3,012,712	-		ABIE53_002673	0.39	-0.5
3,012,712	-		ABIE53_002673	0.39	-1.5
3,012,723	-		ABIE53_002673	0.40	-0.4
3,012,723	-		ABIE53_002673	0.40	-1.7
3,012,725	+		ABIE53_002673	0.40	+1.5
3,012,726	-		ABIE53_002673	0.40	+0.2
3,012,726	-		ABIE53_002673	0.40	-0.5
3,012,726	-		ABIE53_002673	0.40	-1.3
3,012,726	-		ABIE53_002673	0.40	+0.4
3,012,791	+		ABIE53_002673	0.42	-1.0
3,012,791	+		ABIE53_002673	0.42	-0.2
3,012,791	+		ABIE53_002673	0.42	-0.3
3,012,791	+		ABIE53_002673	0.42	+0.2
3,012,792	-		ABIE53_002673	0.42	-1.4
3,012,792	-		ABIE53_002673	0.42	+3.8
3,012,792	-		ABIE53_002673	0.42	-0.2
3,012,792	-		ABIE53_002673	0.42	-0.4
3,012,792	-		ABIE53_002673	0.42	+1.2
3,012,792	-		ABIE53_002673	0.42	+0.9
3,012,792	-		ABIE53_002673	0.42	+2.2
3,012,819	-		ABIE53_002673	0.43	-1.1
3,012,893	+		ABIE53_002673	0.46	-0.4
3,012,932	+		ABIE53_002673	0.48	-0.4
3,012,932	+		ABIE53_002673	0.48	+1.8
3,012,990	-		ABIE53_002673	0.50	-1.6
3,013,074	-		ABIE53_002673	0.53	-0.8
3,013,488	+		ABIE53_002673	0.69	+0.2
3,013,488	+		ABIE53_002673	0.69	+0.2
3,013,488	+		ABIE53_002673	0.69	-0.6
3,013,488	+		ABIE53_002673	0.69	+0.3
3,013,517	+		ABIE53_002673	0.70	+1.8
3,013,518	-		ABIE53_002673	0.70	-0.7
3,013,518	-		ABIE53_002673	0.70	-1.4
3,013,566	-		ABIE53_002673	0.72	+0.0
3,013,581	-		ABIE53_002673	0.73	-1.9
3,013,782	+		ABIE53_002673	0.80	-0.6
3,013,782	+		ABIE53_002673	0.80	-0.1
3,013,782	+		ABIE53_002673	0.80	-0.1
3,013,783	-		ABIE53_002673	0.80	+0.7
3,014,076	+				-0.0
3,014,077	-				+0.1
3,014,087	+				+0.2
3,014,087	+				-0.1
3,014,087	+				+0.1
3,014,087	+				+1.8
3,014,318	+				-1.1
3,014,318	+				-2.0
3,014,362	+				+1.2
3,014,363	-				-2.5
3,014,492	+				+0.4
3,014,557	+				-0.4
3,014,557	+				-1.0
3,014,557	+				+1.7
3,014,558	-				+1.4
3,014,740	+		ABIE53_002674	0.20	-0.8
3,014,740	+		ABIE53_002674	0.20	-0.8
3,014,740	+		ABIE53_002674	0.20	-1.3
3,014,833	+		ABIE53_002674	0.37	-3.3
3,015,079	+		ABIE53_002674	0.81	+0.0
3,015,094	+		ABIE53_002674	0.83	+1.0
3,015,095	-		ABIE53_002674	0.84	-2.9