Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000590 and ABIE53_000591 overlap by 8 nucleotides ABIE53_000591 and ABIE53_000592 are separated by 103 nucleotides ABIE53_000592 and ABIE53_000593 are separated by 231 nucleotides ABIE53_000593 and ABIE53_000594 are separated by 123 nucleotides
ABIE53_000590: ABIE53_000590 - acetyl-CoA C-acetyltransferase, at 646,886 to 648,106
_000590
ABIE53_000591: ABIE53_000591 - carbonic anhydrase, at 648,099 to 648,875
_000591
ABIE53_000592: ABIE53_000592 - isocitrate dehydrogenase kinase/phosphatase, at 648,979 to 650,835
_000592
ABIE53_000593: ABIE53_000593 - DNA-binding transcriptional MerR regulator, at 651,067 to 651,534
_000593
ABIE53_000594: ABIE53_000594 - glyoxylase-like metal-dependent hydrolase (beta-lactamase superfamily II), at 651,658 to 652,728
_000594
Position (kb) 648
649
650
651 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 648.112 kb on - strand at 648.112 kb on - strand at 648.112 kb on - strand at 648.123 kb on + strand at 648.124 kb on - strand at 648.194 kb on + strand, within ABIE53_000591 at 648.307 kb on + strand, within ABIE53_000591 at 648.308 kb on - strand, within ABIE53_000591 at 648.557 kb on - strand, within ABIE53_000591 at 648.662 kb on + strand, within ABIE53_000591 at 648.742 kb on + strand, within ABIE53_000591 at 648.742 kb on + strand, within ABIE53_000591 at 648.742 kb on + strand, within ABIE53_000591 at 648.743 kb on - strand, within ABIE53_000591 at 648.743 kb on - strand, within ABIE53_000591 at 648.743 kb on - strand, within ABIE53_000591 at 648.778 kb on + strand, within ABIE53_000591 at 648.831 kb on + strand at 648.831 kb on + strand at 648.831 kb on + strand at 648.832 kb on - strand at 648.832 kb on - strand at 648.903 kb on + strand at 648.914 kb on + strand at 648.914 kb on + strand at 648.914 kb on + strand at 648.914 kb on + strand at 648.914 kb on + strand at 648.980 kb on + strand at 648.980 kb on + strand at 649.029 kb on + strand at 649.029 kb on + strand at 649.030 kb on - strand at 649.030 kb on - strand at 649.030 kb on - strand at 649.247 kb on + strand, within ABIE53_000592 at 649.247 kb on + strand, within ABIE53_000592 at 649.247 kb on + strand, within ABIE53_000592 at 649.247 kb on + strand, within ABIE53_000592 at 649.247 kb on + strand, within ABIE53_000592 at 649.247 kb on + strand, within ABIE53_000592 at 649.247 kb on + strand, within ABIE53_000592 at 649.247 kb on + strand, within ABIE53_000592 at 649.248 kb on - strand, within ABIE53_000592 at 649.248 kb on - strand, within ABIE53_000592 at 649.284 kb on - strand, within ABIE53_000592 at 649.354 kb on + strand, within ABIE53_000592 at 649.354 kb on + strand, within ABIE53_000592 at 649.358 kb on + strand, within ABIE53_000592 at 649.358 kb on + strand, within ABIE53_000592 at 649.379 kb on + strand, within ABIE53_000592 at 649.380 kb on - strand, within ABIE53_000592 at 649.421 kb on + strand, within ABIE53_000592 at 649.421 kb on + strand, within ABIE53_000592 at 649.421 kb on + strand, within ABIE53_000592 at 649.421 kb on + strand, within ABIE53_000592 at 649.422 kb on - strand, within ABIE53_000592 at 649.422 kb on - strand, within ABIE53_000592 at 649.557 kb on + strand, within ABIE53_000592 at 649.559 kb on + strand, within ABIE53_000592 at 649.559 kb on + strand, within ABIE53_000592 at 649.559 kb on + strand, within ABIE53_000592 at 649.559 kb on + strand, within ABIE53_000592 at 649.559 kb on + strand, within ABIE53_000592 at 649.559 kb on + strand, within ABIE53_000592 at 649.559 kb on + strand, within ABIE53_000592 at 649.559 kb on + strand, within ABIE53_000592 at 649.559 kb on + strand, within ABIE53_000592 at 649.559 kb on + strand, within ABIE53_000592 at 649.560 kb on - strand, within ABIE53_000592 at 649.560 kb on - strand, within ABIE53_000592 at 649.560 kb on - strand, within ABIE53_000592 at 649.560 kb on - strand, within ABIE53_000592 at 649.560 kb on - strand, within ABIE53_000592 at 649.560 kb on - strand, within ABIE53_000592 at 649.560 kb on - strand, within ABIE53_000592 at 649.560 kb on - strand, within ABIE53_000592 at 649.560 kb on - strand, within ABIE53_000592 at 649.560 kb on - strand, within ABIE53_000592 at 649.560 kb on - strand, within ABIE53_000592 at 649.560 kb on - strand, within ABIE53_000592 at 649.560 kb on - strand, within ABIE53_000592 at 649.560 kb on - strand, within ABIE53_000592 at 649.560 kb on - strand, within ABIE53_000592 at 649.560 kb on - strand, within ABIE53_000592 at 649.563 kb on + strand, within ABIE53_000592 at 649.563 kb on + strand, within ABIE53_000592 at 649.563 kb on + strand, within ABIE53_000592 at 649.563 kb on + strand, within ABIE53_000592 at 649.563 kb on + strand, within ABIE53_000592 at 649.564 kb on - strand, within ABIE53_000592 at 649.564 kb on - strand, within ABIE53_000592 at 649.564 kb on - strand, within ABIE53_000592 at 649.677 kb on - strand, within ABIE53_000592 at 649.730 kb on + strand, within ABIE53_000592 at 649.731 kb on - strand, within ABIE53_000592 at 649.731 kb on - strand, within ABIE53_000592 at 649.731 kb on - strand, within ABIE53_000592 at 649.731 kb on - strand, within ABIE53_000592 at 649.731 kb on - strand, within ABIE53_000592 at 649.802 kb on + strand, within ABIE53_000592 at 649.803 kb on - strand, within ABIE53_000592 at 649.907 kb on + strand, within ABIE53_000592 at 649.908 kb on - strand, within ABIE53_000592 at 649.908 kb on - strand, within ABIE53_000592 at 649.949 kb on + strand, within ABIE53_000592 at 649.950 kb on - strand, within ABIE53_000592 at 649.950 kb on - strand, within ABIE53_000592 at 649.950 kb on - strand, within ABIE53_000592 at 650.000 kb on + strand, within ABIE53_000592 at 650.000 kb on + strand, within ABIE53_000592 at 650.000 kb on + strand, within ABIE53_000592 at 650.000 kb on + strand, within ABIE53_000592 at 650.000 kb on + strand, within ABIE53_000592 at 650.001 kb on - strand, within ABIE53_000592 at 650.001 kb on - strand, within ABIE53_000592 at 650.001 kb on - strand, within ABIE53_000592 at 650.011 kb on + strand, within ABIE53_000592 at 650.011 kb on + strand, within ABIE53_000592 at 650.011 kb on + strand, within ABIE53_000592 at 650.011 kb on + strand, within ABIE53_000592 at 650.012 kb on - strand, within ABIE53_000592 at 650.012 kb on - strand, within ABIE53_000592 at 650.012 kb on - strand, within ABIE53_000592 at 650.033 kb on + strand, within ABIE53_000592 at 650.033 kb on + strand, within ABIE53_000592 at 650.034 kb on - strand, within ABIE53_000592 at 650.034 kb on - strand, within ABIE53_000592 at 650.034 kb on - strand, within ABIE53_000592 at 650.175 kb on + strand, within ABIE53_000592 at 650.176 kb on - strand, within ABIE53_000592 at 650.176 kb on - strand, within ABIE53_000592 at 650.176 kb on - strand, within ABIE53_000592 at 650.177 kb on + strand, within ABIE53_000592 at 650.178 kb on - strand, within ABIE53_000592 at 650.178 kb on - strand, within ABIE53_000592 at 650.178 kb on - strand, within ABIE53_000592 at 650.178 kb on - strand, within ABIE53_000592 at 650.178 kb on - strand, within ABIE53_000592 at 650.375 kb on + strand, within ABIE53_000592 at 650.375 kb on + strand, within ABIE53_000592 at 650.376 kb on - strand, within ABIE53_000592 at 650.378 kb on + strand, within ABIE53_000592 at 650.378 kb on + strand, within ABIE53_000592 at 650.379 kb on - strand, within ABIE53_000592 at 650.379 kb on - strand, within ABIE53_000592 at 650.379 kb on - strand, within ABIE53_000592 at 650.379 kb on - strand, within ABIE53_000592 at 650.379 kb on - strand, within ABIE53_000592 at 650.388 kb on - strand, within ABIE53_000592 at 650.388 kb on - strand, within ABIE53_000592 at 650.420 kb on + strand, within ABIE53_000592 at 650.421 kb on + strand, within ABIE53_000592 at 650.421 kb on + strand, within ABIE53_000592 at 650.421 kb on + strand, within ABIE53_000592 at 650.422 kb on - strand, within ABIE53_000592 at 650.423 kb on + strand, within ABIE53_000592 at 650.424 kb on - strand, within ABIE53_000592 at 650.424 kb on - strand, within ABIE53_000592 at 650.424 kb on - strand, within ABIE53_000592 at 650.424 kb on - strand, within ABIE53_000592 at 650.471 kb on + strand, within ABIE53_000592 at 650.471 kb on + strand, within ABIE53_000592 at 650.472 kb on - strand, within ABIE53_000592 at 650.558 kb on + strand, within ABIE53_000592 at 650.558 kb on + strand, within ABIE53_000592 at 650.558 kb on + strand, within ABIE53_000592 at 650.558 kb on + strand, within ABIE53_000592 at 650.558 kb on + strand, within ABIE53_000592 at 650.559 kb on - strand, within ABIE53_000592 at 650.559 kb on - strand, within ABIE53_000592 at 650.559 kb on - strand, within ABIE53_000592 at 650.559 kb on - strand, within ABIE53_000592 at 650.559 kb on - strand, within ABIE53_000592 at 650.609 kb on + strand, within ABIE53_000592 at 650.654 kb on + strand at 650.654 kb on + strand at 650.654 kb on + strand at 650.654 kb on + strand at 650.654 kb on + strand at 650.655 kb on - strand at 650.655 kb on - strand at 650.655 kb on - strand at 650.661 kb on + strand at 650.662 kb on - strand at 650.662 kb on - strand at 650.662 kb on - strand at 650.662 kb on - strand at 650.662 kb on - strand at 650.662 kb on - strand at 650.662 kb on - strand at 650.662 kb on - strand at 650.754 kb on - strand at 650.880 kb on + strand at 650.880 kb on + strand at 650.880 kb on + strand at 650.880 kb on + strand at 650.880 kb on + strand at 650.881 kb on - strand at 650.881 kb on - strand at 651.004 kb on - strand at 651.047 kb on + strand at 651.047 kb on + strand at 651.048 kb on - strand at 651.048 kb on - strand at 651.188 kb on + strand, within ABIE53_000593 at 651.188 kb on + strand, within ABIE53_000593 at 651.311 kb on + strand, within ABIE53_000593 at 651.311 kb on + strand, within ABIE53_000593 at 651.311 kb on + strand, within ABIE53_000593 at 651.312 kb on - strand, within ABIE53_000593 at 651.312 kb on - strand, within ABIE53_000593 at 651.404 kb on + strand, within ABIE53_000593 at 651.405 kb on - strand, within ABIE53_000593 at 651.465 kb on - strand, within ABIE53_000593 at 651.472 kb on + strand, within ABIE53_000593 at 651.472 kb on + strand, within ABIE53_000593 at 651.472 kb on + strand, within ABIE53_000593 at 651.473 kb on - strand, within ABIE53_000593 at 651.473 kb on - strand, within ABIE53_000593 at 651.473 kb on - strand, within ABIE53_000593 at 651.473 kb on - strand, within ABIE53_000593 at 651.473 kb on - strand, within ABIE53_000593 at 651.521 kb on + strand at 651.521 kb on + strand at 651.521 kb on + strand at 651.522 kb on - strand at 651.522 kb on - strand at 651.522 kb on - strand at 651.588 kb on + strand at 651.588 kb on + strand at 651.629 kb on + strand at 651.630 kb on - strand at 651.783 kb on + strand, within ABIE53_000594
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days remove 648,112 - -0.2 648,112 - +0.2 648,112 - -1.0 648,123 + -1.2 648,124 - -0.8 648,194 + ABIE53_000591 0.12 +1.7 648,307 + ABIE53_000591 0.27 -2.7 648,308 - ABIE53_000591 0.27 +0.3 648,557 - ABIE53_000591 0.59 -2.4 648,662 + ABIE53_000591 0.72 -0.3 648,742 + ABIE53_000591 0.83 -0.5 648,742 + ABIE53_000591 0.83 +0.0 648,742 + ABIE53_000591 0.83 -0.5 648,743 - ABIE53_000591 0.83 -2.2 648,743 - ABIE53_000591 0.83 -0.1 648,743 - ABIE53_000591 0.83 -0.4 648,778 + ABIE53_000591 0.87 -2.0 648,831 + -2.6 648,831 + +1.1 648,831 + +0.8 648,832 - -0.5 648,832 - +0.0 648,903 + -0.2 648,914 + -0.7 648,914 + -1.9 648,914 + -1.6 648,914 + +1.3 648,914 + +2.0 648,980 + -1.0 648,980 + -1.8 649,029 + +0.5 649,029 + -1.2 649,030 - +0.3 649,030 - +0.2 649,030 - -1.1 649,247 + ABIE53_000592 0.14 -1.1 649,247 + ABIE53_000592 0.14 +0.3 649,247 + ABIE53_000592 0.14 +0.2 649,247 + ABIE53_000592 0.14 -0.3 649,247 + ABIE53_000592 0.14 -1.2 649,247 + ABIE53_000592 0.14 +0.8 649,247 + ABIE53_000592 0.14 +2.3 649,247 + ABIE53_000592 0.14 +2.3 649,248 - ABIE53_000592 0.14 +1.9 649,248 - ABIE53_000592 0.14 +0.0 649,284 - ABIE53_000592 0.16 +0.3 649,354 + ABIE53_000592 0.20 -1.5 649,354 + ABIE53_000592 0.20 -0.8 649,358 + ABIE53_000592 0.20 -1.0 649,358 + ABIE53_000592 0.20 +0.9 649,379 + ABIE53_000592 0.22 -2.4 649,380 - ABIE53_000592 0.22 -1.2 649,421 + ABIE53_000592 0.24 -2.1 649,421 + ABIE53_000592 0.24 +0.3 649,421 + ABIE53_000592 0.24 -0.8 649,421 + ABIE53_000592 0.24 +0.4 649,422 - ABIE53_000592 0.24 +0.0 649,422 - ABIE53_000592 0.24 -0.4 649,557 + ABIE53_000592 0.31 +0.3 649,559 + ABIE53_000592 0.31 +1.3 649,559 + ABIE53_000592 0.31 -0.5 649,559 + ABIE53_000592 0.31 -2.0 649,559 + ABIE53_000592 0.31 -0.8 649,559 + ABIE53_000592 0.31 -1.2 649,559 + ABIE53_000592 0.31 -0.0 649,559 + ABIE53_000592 0.31 -0.2 649,559 + ABIE53_000592 0.31 -1.2 649,559 + ABIE53_000592 0.31 -0.2 649,559 + ABIE53_000592 0.31 -1.0 649,560 - ABIE53_000592 0.31 -0.8 649,560 - ABIE53_000592 0.31 +0.8 649,560 - ABIE53_000592 0.31 -0.2 649,560 - ABIE53_000592 0.31 +0.4 649,560 - ABIE53_000592 0.31 -0.5 649,560 - ABIE53_000592 0.31 +3.7 649,560 - ABIE53_000592 0.31 +1.5 649,560 - ABIE53_000592 0.31 +0.1 649,560 - ABIE53_000592 0.31 +0.1 649,560 - ABIE53_000592 0.31 -1.5 649,560 - ABIE53_000592 0.31 +0.8 649,560 - ABIE53_000592 0.31 +2.3 649,560 - ABIE53_000592 0.31 -1.5 649,560 - ABIE53_000592 0.31 -0.9 649,560 - ABIE53_000592 0.31 +1.6 649,560 - ABIE53_000592 0.31 -1.5 649,563 + ABIE53_000592 0.31 -0.4 649,563 + ABIE53_000592 0.31 +0.0 649,563 + ABIE53_000592 0.31 +0.8 649,563 + ABIE53_000592 0.31 -1.1 649,563 + ABIE53_000592 0.31 -0.6 649,564 - ABIE53_000592 0.32 -0.2 649,564 - ABIE53_000592 0.32 +0.9 649,564 - ABIE53_000592 0.32 +0.5 649,677 - ABIE53_000592 0.38 -0.7 649,730 + ABIE53_000592 0.40 -3.8 649,731 - ABIE53_000592 0.40 +0.8 649,731 - ABIE53_000592 0.40 -0.5 649,731 - ABIE53_000592 0.40 -1.5 649,731 - ABIE53_000592 0.40 +0.0 649,731 - ABIE53_000592 0.40 +0.3 649,802 + ABIE53_000592 0.44 -0.8 649,803 - ABIE53_000592 0.44 -2.2 649,907 + ABIE53_000592 0.50 +0.2 649,908 - ABIE53_000592 0.50 -3.4 649,908 - ABIE53_000592 0.50 +0.3 649,949 + ABIE53_000592 0.52 -2.0 649,950 - ABIE53_000592 0.52 -0.7 649,950 - ABIE53_000592 0.52 -0.7 649,950 - ABIE53_000592 0.52 +0.0 650,000 + ABIE53_000592 0.55 -0.8 650,000 + ABIE53_000592 0.55 -0.7 650,000 + ABIE53_000592 0.55 +0.3 650,000 + ABIE53_000592 0.55 -0.5 650,000 + ABIE53_000592 0.55 +0.3 650,001 - ABIE53_000592 0.55 +0.0 650,001 - ABIE53_000592 0.55 -0.2 650,001 - ABIE53_000592 0.55 -1.0 650,011 + ABIE53_000592 0.56 +0.0 650,011 + ABIE53_000592 0.56 -1.8 650,011 + ABIE53_000592 0.56 -1.3 650,011 + ABIE53_000592 0.56 -0.3 650,012 - ABIE53_000592 0.56 +0.0 650,012 - ABIE53_000592 0.56 +0.8 650,012 - ABIE53_000592 0.56 +0.2 650,033 + ABIE53_000592 0.57 +0.3 650,033 + ABIE53_000592 0.57 -0.2 650,034 - ABIE53_000592 0.57 +2.3 650,034 - ABIE53_000592 0.57 +2.4 650,034 - ABIE53_000592 0.57 +2.3 650,175 + ABIE53_000592 0.64 -0.4 650,176 - ABIE53_000592 0.64 +0.3 650,176 - ABIE53_000592 0.64 -0.3 650,176 - ABIE53_000592 0.64 -0.2 650,177 + ABIE53_000592 0.65 -2.2 650,178 - ABIE53_000592 0.65 -2.4 650,178 - ABIE53_000592 0.65 -1.2 650,178 - ABIE53_000592 0.65 +0.0 650,178 - ABIE53_000592 0.65 +1.1 650,178 - ABIE53_000592 0.65 -0.5 650,375 + ABIE53_000592 0.75 -2.9 650,375 + ABIE53_000592 0.75 -2.5 650,376 - ABIE53_000592 0.75 -0.2 650,378 + ABIE53_000592 0.75 +0.5 650,378 + ABIE53_000592 0.75 -0.8 650,379 - ABIE53_000592 0.75 -2.0 650,379 - ABIE53_000592 0.75 -1.9 650,379 - ABIE53_000592 0.75 -1.9 650,379 - ABIE53_000592 0.75 -0.3 650,379 - ABIE53_000592 0.75 -1.0 650,388 - ABIE53_000592 0.76 -1.0 650,388 - ABIE53_000592 0.76 -1.0 650,420 + ABIE53_000592 0.78 -0.6 650,421 + ABIE53_000592 0.78 -2.2 650,421 + ABIE53_000592 0.78 -1.9 650,421 + ABIE53_000592 0.78 -2.4 650,422 - ABIE53_000592 0.78 +0.6 650,423 + ABIE53_000592 0.78 -0.2 650,424 - ABIE53_000592 0.78 -1.6 650,424 - ABIE53_000592 0.78 +0.0 650,424 - ABIE53_000592 0.78 +0.3 650,424 - ABIE53_000592 0.78 -0.8 650,471 + ABIE53_000592 0.80 +1.3 650,471 + ABIE53_000592 0.80 -2.5 650,472 - ABIE53_000592 0.80 -2.2 650,558 + ABIE53_000592 0.85 -1.1 650,558 + ABIE53_000592 0.85 -1.4 650,558 + ABIE53_000592 0.85 -0.5 650,558 + ABIE53_000592 0.85 -1.2 650,558 + ABIE53_000592 0.85 -1.7 650,559 - ABIE53_000592 0.85 -0.7 650,559 - ABIE53_000592 0.85 -0.2 650,559 - ABIE53_000592 0.85 -1.0 650,559 - ABIE53_000592 0.85 -1.6 650,559 - ABIE53_000592 0.85 -2.0 650,609 + ABIE53_000592 0.88 +1.1 650,654 + +0.0 650,654 + -1.0 650,654 + -0.9 650,654 + +0.8 650,654 + -1.4 650,655 - -0.7 650,655 - +1.3 650,655 - -1.0 650,661 + -2.2 650,662 - -1.7 650,662 - +1.9 650,662 - -1.2 650,662 - -0.6 650,662 - -1.5 650,662 - -0.8 650,662 - +0.8 650,662 - -0.5 650,754 - -2.2 650,880 + -0.8 650,880 + -1.5 650,880 + +3.5 650,880 + +0.0 650,880 + +1.2 650,881 - -0.8 650,881 - +0.3 651,004 - +0.3 651,047 + -1.1 651,047 + -0.3 651,048 - +0.2 651,048 - -1.0 651,188 + ABIE53_000593 0.26 +1.3 651,188 + ABIE53_000593 0.26 -1.9 651,311 + ABIE53_000593 0.52 -0.4 651,311 + ABIE53_000593 0.52 -2.2 651,311 + ABIE53_000593 0.52 -1.2 651,312 - ABIE53_000593 0.52 -1.0 651,312 - ABIE53_000593 0.52 -0.1 651,404 + ABIE53_000593 0.72 -0.5 651,405 - ABIE53_000593 0.72 -1.5 651,465 - ABIE53_000593 0.85 -1.0 651,472 + ABIE53_000593 0.87 -0.9 651,472 + ABIE53_000593 0.87 -1.2 651,472 + ABIE53_000593 0.87 +1.3 651,473 - ABIE53_000593 0.87 -2.6 651,473 - ABIE53_000593 0.87 +1.5 651,473 - ABIE53_000593 0.87 -1.9 651,473 - ABIE53_000593 0.87 -0.6 651,473 - ABIE53_000593 0.87 -1.2 651,521 + -2.5 651,521 + -0.8 651,521 + -0.4 651,522 - -0.7 651,522 - +1.8 651,522 - +0.2 651,588 + -3.4 651,588 + +0.9 651,629 + -0.5 651,630 - +2.3 651,783 + ABIE53_000594 0.12 +0.5
Or see this region's nucleotide sequence