Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_977

Experiment: Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1
1,103,760	+		Pf1N1B4_974	0.82	-0.2
1,103,761	-		Pf1N1B4_974	0.82	-1.0
1,103,761	-		Pf1N1B4_974	0.82	+0.6
1,103,761	-		Pf1N1B4_974	0.82	-1.1
1,103,897	-				+0.8
1,103,897	-				+0.3
1,103,897	-				-1.2
1,103,897	-				+0.8
1,103,897	-				+0.4
1,103,897	-				-0.2
1,103,897	-				-0.3
1,103,897	-				+0.5
1,103,897	-				+0.7
1,103,978	+				-0.3
1,103,979	-				+0.8
1,104,000	-				-1.2
1,104,037	+				+1.8
1,104,038	-				+0.4
1,104,038	-				-0.5
1,104,038	-				+2.3
1,104,145	+		Pf1N1B4_975	0.24	-1.6
1,104,145	+		Pf1N1B4_975	0.24	+2.6
1,104,146	-		Pf1N1B4_975	0.24	+1.2
1,104,146	-		Pf1N1B4_975	0.24	+0.3
1,104,601	-		Pf1N1B4_976	0.45	+0.1
1,104,834	+		Pf1N1B4_977	0.22	-1.0
1,104,834	+		Pf1N1B4_977	0.22	-2.0
1,104,834	+		Pf1N1B4_977	0.22	-2.1
1,104,834	+		Pf1N1B4_977	0.22	-0.5
1,104,834	+		Pf1N1B4_977	0.22	-2.2
1,104,834	+		Pf1N1B4_977	0.22	-0.9
1,104,834	+		Pf1N1B4_977	0.22	+0.1
1,104,835	-		Pf1N1B4_977	0.22	-0.6
1,104,835	-		Pf1N1B4_977	0.22	-1.0
1,104,835	-		Pf1N1B4_977	0.22	-2.5
1,104,835	-		Pf1N1B4_977	0.22	+0.8
1,104,835	-		Pf1N1B4_977	0.22	+1.8
1,104,943	+		Pf1N1B4_977	0.45	+0.8
1,105,168	+				+0.3
1,105,168	+				-0.3
1,105,168	+				-0.7
1,105,168	+				+0.2
1,105,168	+				-1.2
1,105,168	+				-0.2
1,105,169	-				+1.1
1,105,210	+				-1.7
1,105,211	-				-0.1
1,105,235	+				+1.1
1,105,235	+				+1.9
1,105,268	+				+2.4
1,105,328	+				+0.1
1,105,335	+				-1.5
1,105,336	-				-1.7
1,105,380	+				+1.8
1,105,380	+				-0.5
1,105,380	+				-1.7
1,105,380	+				-0.7
1,105,380	+				+1.0
1,105,384	+				-1.3
1,105,384	+				+2.1
1,105,384	+				+0.2
1,105,384	+				-3.8
1,105,384	+				-0.2
1,105,384	+				+0.8
1,105,384	+				+0.7
1,105,385	-				-0.0
1,105,385	-				+4.0
1,105,385	-				+0.3
1,105,385	-				-0.7
1,105,385	-				+0.4
1,105,385	-				+0.6
1,105,385	-				-1.4
1,105,385	-				-2.5
1,105,394	-				+0.3
1,105,394	-				-0.2
1,105,502	+				+1.5
1,105,502	+				-1.3
1,105,502	+				-0.7
1,105,502	+				-2.5
1,105,502	+				+0.1
1,105,502	+				-1.7
1,105,502	+				-2.5
1,105,503	-				-1.3
1,105,503	-				-0.0
1,105,503	-				+1.1
1,105,503	-				+1.2
1,105,503	-				-0.2
1,105,503	-				+0.8
1,105,503	-				-0.7
1,105,539	+				-1.2
1,105,539	+				-0.5
1,105,539	+				-0.3
1,105,539	+				+0.8
1,105,539	+				+1.0
1,105,540	-				+1.3
1,105,540	-				-1.9
1,105,540	-				+0.3
1,105,540	-				-2.3
1,105,540	-				+1.8
1,105,540	-				-2.1
1,105,540	-				-0.5
1,105,569	+				+1.3
1,105,570	-				-1.3
1,105,660	+		Pf1N1B4_978	0.16	+0.3
1,105,660	+		Pf1N1B4_978	0.16	-1.2
1,105,661	-		Pf1N1B4_978	0.16	+0.6
1,105,719	+		Pf1N1B4_978	0.20	-1.3
1,105,719	+		Pf1N1B4_978	0.20	-3.1
1,105,719	+		Pf1N1B4_978	0.20	-3.0
1,105,719	+		Pf1N1B4_978	0.20	+0.3
1,105,719	+		Pf1N1B4_978	0.20	-1.2
1,105,719	+		Pf1N1B4_978	0.20	+0.6
1,105,719	+		Pf1N1B4_978	0.20	+0.5
1,105,719	+		Pf1N1B4_978	0.20	-1.1
1,105,719	+		Pf1N1B4_978	0.20	-0.2
1,105,719	+		Pf1N1B4_978	0.20	-0.9
1,105,720	-		Pf1N1B4_978	0.20	-0.9
1,105,720	-		Pf1N1B4_978	0.20	+0.0
1,105,720	-		Pf1N1B4_978	0.20	-0.2
1,105,720	-				+2.8
1,105,720	-		Pf1N1B4_978	0.20	+1.3
1,105,720	-		Pf1N1B4_978	0.20	-1.2
1,105,761	+		Pf1N1B4_978	0.23	+0.0
1,105,761	+		Pf1N1B4_978	0.23	+0.3
1,105,761	+		Pf1N1B4_978	0.23	-0.6
1,105,761	+		Pf1N1B4_978	0.23	-1.6
1,105,761	+		Pf1N1B4_978	0.23	-0.9
1,105,762	-		Pf1N1B4_978	0.23	+0.5
1,105,762	-		Pf1N1B4_978	0.23	+0.6
1,105,762	-		Pf1N1B4_978	0.23	+0.7
1,105,762	-		Pf1N1B4_978	0.23	+1.4
1,105,762	-		Pf1N1B4_978	0.23	+2.9
1,105,762	-		Pf1N1B4_978	0.23	+1.1
1,106,037	+		Pf1N1B4_978	0.43	-0.8
1,106,038	-		Pf1N1B4_978	0.43	-2.3
1,106,038	-		Pf1N1B4_978	0.43	-2.5
1,106,055	+				+0.8
1,106,055	+		Pf1N1B4_978	0.44	-0.2
1,106,055	+		Pf1N1B4_978	0.44	-0.5
1,106,055	+		Pf1N1B4_978	0.44	-0.2
1,106,056	-		Pf1N1B4_978	0.44	+2.0
1,106,056	-		Pf1N1B4_978	0.44	+0.1