Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5262

Experiment: Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1
20,627	+				-1.6
20,627	+				-0.5
20,630	+				+3.3
20,657	+				-0.2
20,758	+				+0.2
20,977	+				-0.2
20,977	+				+1.8
21,099	+		Pf1N1B4_5261	0.62	-0.8
21,100	-		Pf1N1B4_5261	0.63	+1.2
21,100	-		Pf1N1B4_5261	0.63	-1.6
21,100	-		Pf1N1B4_5261	0.63	-0.2
21,200	+				-3.1
21,220	+				+0.5
21,359	+				+0.8
21,360	-				-0.6
21,589	+				-0.4
21,724	+		Pf1N1B4_5262	0.36	-0.9
21,725	-		Pf1N1B4_5262	0.37	-1.0
21,904	+		Pf1N1B4_5262	0.73	-0.7
21,904	+		Pf1N1B4_5262	0.73	-2.4
21,904	+		Pf1N1B4_5262	0.73	-1.7
21,905	-		Pf1N1B4_5262	0.73	+1.8
21,905	-		Pf1N1B4_5262	0.73	-1.6
21,905	-		Pf1N1B4_5262	0.73	-0.3
21,905	-		Pf1N1B4_5262	0.73	+1.8
21,941	+		Pf1N1B4_5262	0.81	-2.9
21,941	+		Pf1N1B4_5262	0.81	+0.0
21,943	+		Pf1N1B4_5262	0.81	-1.4
21,944	-		Pf1N1B4_5262	0.81	+0.3
21,944	-		Pf1N1B4_5262	0.81	-1.1
21,961	+		Pf1N1B4_5262	0.85	-0.8
22,078	-				+0.0
22,104	+				-2.1
22,105	-				-0.2
22,105	-				+0.2
22,159	+				-1.4
22,159	+				+0.3
22,160	-				-1.0
22,162	+				-2.1
22,162	+				-1.1
22,162	+				-2.7
22,162	+				+0.8
22,162	+				-1.4
22,527	+				+1.2
22,528	-				-0.6
22,541	+				+1.4
22,541	+				-0.2
22,542	-				-1.2
22,542	-				-1.9
22,542	-				-1.6
22,542	-				-0.7
22,604	+		Pf1N1B4_5263	0.39	-0.2
22,604	+		Pf1N1B4_5263	0.39	+0.8
22,605	-		Pf1N1B4_5263	0.40	-0.3
22,605	-		Pf1N1B4_5263	0.40	+1.2
22,605	-		Pf1N1B4_5263	0.40	+0.9
22,605	-		Pf1N1B4_5263	0.40	+0.9
22,605	-		Pf1N1B4_5263	0.40	-0.2
22,605	-		Pf1N1B4_5263	0.40	-2.4
22,605	-		Pf1N1B4_5263	0.40	-0.4
22,605	-		Pf1N1B4_5263	0.40	-1.7
22,605	-		Pf1N1B4_5263	0.40	-0.8
22,605	-		Pf1N1B4_5263	0.40	+0.9
22,670	+		Pf1N1B4_5263	0.73	+1.5
22,671	-		Pf1N1B4_5263	0.73	+1.8
22,671	-				-0.6
22,671	-				-1.2
22,671	-		Pf1N1B4_5263	0.73	-0.1
22,718	-				-1.4
22,718	-				+0.3
22,797	+		Pf1N1B4_5264	0.47	+2.8
22,798	-				+1.2
22,878	+				-1.3
22,879	-				+1.3
22,879	-				-0.6
22,905	-				-0.8
22,906	+				-1.8
22,907	-				+1.0
22,907	-				-1.8
22,938	-				+1.8
22,958	-				+0.8
22,974	-				-1.1