Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4450

Experiment: Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1
4,908,838	+		Pf1N1B4_4449	0.50	+0.1
4,908,839	-		Pf1N1B4_4449	0.50	-2.2
4,908,839	-		Pf1N1B4_4449	0.50	-1.4
4,908,839	-		Pf1N1B4_4449	0.50	-1.6
4,909,097	-		Pf1N1B4_4449	0.66	-0.2
4,909,207	+		Pf1N1B4_4449	0.73	-0.4
4,909,207	+				+0.8
4,909,208	-		Pf1N1B4_4449	0.73	+0.8
4,909,304	-		Pf1N1B4_4449	0.79	-1.6
4,909,369	+		Pf1N1B4_4449	0.83	+0.2
4,909,528	+				+0.3
4,909,729	-				-1.1
4,909,729	-				+0.3
4,909,740	+				+0.9
4,909,740	+				-1.1
4,909,740	+				+0.5
4,909,741	-				-1.8
4,909,741	-				+0.4
4,909,754	+				-0.2
4,909,755	-				-1.4
4,909,830	+				-1.9
4,909,830	+				+0.2
4,909,830	+				-2.0
4,909,936	+				+0.5
4,909,937	-				+0.5
4,910,140	-		Pf1N1B4_4450	0.19	+0.8
4,910,213	+		Pf1N1B4_4450	0.23	-0.4
4,910,241	+		Pf1N1B4_4450	0.25	+0.0
4,910,241	+		Pf1N1B4_4450	0.25	+0.4
4,910,242	-		Pf1N1B4_4450	0.25	-1.0
4,910,242	-				-1.2
4,910,397	+		Pf1N1B4_4450	0.34	+0.3
4,910,488	-		Pf1N1B4_4450	0.40	-0.2
4,910,493	+		Pf1N1B4_4450	0.40	-1.6
4,910,804	+		Pf1N1B4_4450	0.59	-2.6
4,911,160	-		Pf1N1B4_4450	0.81	-1.6
4,911,160	-		Pf1N1B4_4450	0.81	+0.5
4,911,183	+				-0.8
4,911,401	+				-2.5
4,911,450	+				+0.2
4,911,451	-				+0.9
4,911,451	-				-0.6
4,912,104	+		Pf1N1B4_4451	0.56	-1.2
4,912,104	+		Pf1N1B4_4451	0.56	+0.3
4,912,104	+		Pf1N1B4_4451	0.56	+0.1
4,912,119	+		Pf1N1B4_4451	0.57	+0.2
4,912,120	-				+0.3
4,912,326	+		Pf1N1B4_4451	0.81	+0.6
4,912,326	+		Pf1N1B4_4451	0.81	+1.4
4,912,326	+		Pf1N1B4_4451	0.81	+1.0
4,912,327	-		Pf1N1B4_4451	0.81	+2.2
4,912,327	-		Pf1N1B4_4451	0.81	+1.3
4,912,400	+		Pf1N1B4_4451	0.89	+0.2