Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3690

Experiment: Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1
4,098,721	+		Pf1N1B4_3687	0.87	-1.7
4,098,721	+		Pf1N1B4_3687	0.87	-2.3
4,098,763	+				-0.4
4,098,763	+				+0.7
4,098,763	+				-0.8
4,098,763	+				-0.2
4,098,763	+				-1.7
4,098,763	+				-1.2
4,098,765	+				-0.4
4,099,096	+				+1.8
4,099,096	+		Pf1N1B4_3688	0.70	+1.4
4,099,096	+		Pf1N1B4_3688	0.70	-1.2
4,099,096	+		Pf1N1B4_3688	0.70	-0.2
4,099,096	+		Pf1N1B4_3688	0.70	+0.5
4,099,096	+		Pf1N1B4_3688	0.70	+0.1
4,099,096	+		Pf1N1B4_3688	0.70	+0.2
4,099,096	+		Pf1N1B4_3688	0.70	+0.5
4,099,096	+		Pf1N1B4_3688	0.70	-1.4
4,099,096	+		Pf1N1B4_3688	0.70	-0.8
4,099,096	+		Pf1N1B4_3688	0.70	-0.2
4,099,096	+		Pf1N1B4_3688	0.70	+0.2
4,099,096	+		Pf1N1B4_3688	0.70	-1.1
4,099,096	+		Pf1N1B4_3688	0.70	+0.8
4,099,096	+		Pf1N1B4_3688	0.70	-1.7
4,099,097	-		Pf1N1B4_3688	0.71	+0.7
4,099,097	-		Pf1N1B4_3688	0.71	-0.1
4,099,097	-		Pf1N1B4_3688	0.71	-0.2
4,099,097	-		Pf1N1B4_3688	0.71	+1.2
4,099,097	-		Pf1N1B4_3688	0.71	-1.2
4,099,098	+		Pf1N1B4_3688	0.71	-0.8
4,099,098	+		Pf1N1B4_3688	0.71	-0.2
4,099,098	+		Pf1N1B4_3688	0.71	-1.7
4,099,098	+		Pf1N1B4_3688	0.71	+0.1
4,099,098	+		Pf1N1B4_3688	0.71	-1.8
4,099,110	+		Pf1N1B4_3688	0.74	+0.2
4,099,159	+		Pf1N1B4_3688	0.86	-1.2
4,099,339	+		Pf1N1B4_3689	0.19	+1.0
4,099,519	+				+0.8
4,099,520	-				-2.0
4,099,523	+				-1.2
4,099,524	-				-1.5
4,099,524	-				-1.5
4,099,524	-				+0.2
4,099,524	-				-0.2
4,099,562	-				+0.6
4,099,566	-				-0.3
4,099,595	+				-0.7
4,099,604	+				+0.2
4,099,605	-				+0.4
4,099,617	+				-0.2
4,099,618	-				+1.0
4,099,618	-				-1.5
4,099,618	-				-0.5
4,099,618	-				-0.5
4,099,618	-				+0.5
4,099,619	+				-1.0
4,099,620	-				-1.4
4,099,620	-				+0.9
4,099,620	-				-0.1
4,099,620	-				+0.1
4,099,622	-				+0.8
4,099,622	-				+1.5
4,099,622	-				-0.8
4,099,622	-				-2.4
4,099,622	-				-0.6
4,099,622	-				-1.5
4,099,622	-				-1.6
4,099,622	-				-0.7
4,099,622	-				-0.7
4,099,622	-				+0.2
4,099,622	-				-0.3
4,099,622	-				-0.1
4,099,622	-				+0.4
4,099,636	-				-1.3
4,099,678	-				+0.6
4,099,678	-				-0.2
4,099,678	-				-1.0
4,099,689	-				-1.7
4,099,760	-		Pf1N1B4_3690	0.14	+1.8
4,099,816	-		Pf1N1B4_3690	0.25	-2.4
4,099,962	+		Pf1N1B4_3690	0.56	+0.4
4,099,963	-		Pf1N1B4_3690	0.56	-0.5
4,099,963	-				-1.8
4,099,995	+		Pf1N1B4_3690	0.63	-0.7
4,099,995	+		Pf1N1B4_3690	0.63	-1.2
4,099,996	-		Pf1N1B4_3690	0.63	+1.1
4,100,014	-		Pf1N1B4_3690	0.67	-0.1
4,100,102	+		Pf1N1B4_3690	0.85	+0.1
4,100,153	-				-0.5
4,100,338	-		Pf1N1B4_3691	0.38	-1.0
4,100,674	+				-1.0
4,101,126	+		Pf1N1B4_3692	0.23	-1.8