Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3415

Experiment: Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1
3,804,308	+		Pf1N1B4_3413	0.61	-0.4
3,804,308	+		Pf1N1B4_3413	0.61	-1.4
3,804,439	+		Pf1N1B4_3413	0.76	-2.1
3,804,465	+		Pf1N1B4_3413	0.79	-2.0
3,804,465	+				+1.1
3,804,817	+		Pf1N1B4_3414	0.63	-1.5
3,804,818	-		Pf1N1B4_3414	0.64	-1.5
3,804,818	-		Pf1N1B4_3414	0.64	-0.8
3,804,818	-		Pf1N1B4_3414	0.64	-1.9
3,804,944	+				-1.1
3,804,945	-				+1.8
3,804,946	+				+1.4
3,804,947	-				-0.5
3,804,990	+				-0.4
3,804,991	-				-1.0
3,804,991	-				+0.0
3,804,995	-				-2.7
3,805,060	-				-2.0
3,805,060	-				-1.2
3,805,248	-		Pf1N1B4_3415	0.33	-0.7
3,805,515	+		Pf1N1B4_3415	0.77	-0.5
3,805,515	+		Pf1N1B4_3415	0.77	-2.1
3,805,515	+		Pf1N1B4_3415	0.77	+0.8
3,805,516	-		Pf1N1B4_3415	0.77	-1.3
3,805,516	-		Pf1N1B4_3415	0.77	+0.1
3,805,516	-		Pf1N1B4_3415	0.77	-1.2
3,805,528	+		Pf1N1B4_3415	0.79	-0.8
3,805,657	+				-0.5
3,805,657	+				-1.4
3,805,661	+				+0.2
3,805,661	+				-1.4
3,805,661	+				-1.0
3,805,704	-				-0.2
3,805,737	-				-0.2
3,805,737	-				+0.2
3,805,750	+				-2.4
3,805,761	+				-1.1
3,805,818	+				-0.8
3,805,819	-				+0.8
3,805,819	-				-0.5
3,805,884	-				-1.1
3,805,955	+				-1.0
3,805,956	-				-2.4
3,806,127	-		Pf1N1B4_3416	0.24	+0.8
3,806,127	-		Pf1N1B4_3416	0.24	+2.2
3,806,284	+		Pf1N1B4_3416	0.39	-0.8
3,806,284	+		Pf1N1B4_3416	0.39	-0.8
3,806,284	+		Pf1N1B4_3416	0.39	+1.8
3,806,285	-		Pf1N1B4_3416	0.39	-0.5
3,806,285	-		Pf1N1B4_3416	0.39	-1.4
3,806,285	-		Pf1N1B4_3416	0.39	-1.0
3,806,335	+		Pf1N1B4_3416	0.44	-1.4
3,806,336	-		Pf1N1B4_3416	0.44	-0.5
3,806,641	+		Pf1N1B4_3416	0.73	+0.5
3,806,641	+		Pf1N1B4_3416	0.73	+0.8
3,806,642	-		Pf1N1B4_3416	0.73	-1.3