Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3224

Experiment: Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1
3,608,731	+		Pf1N1B4_3223	0.52	-1.3
3,608,731	+		Pf1N1B4_3223	0.52	-1.5
3,608,731	+		Pf1N1B4_3223	0.52	+1.4
3,608,731	+		Pf1N1B4_3223	0.52	+1.7
3,608,731	+		Pf1N1B4_3223	0.52	+2.2
3,608,731	+		Pf1N1B4_3223	0.52	+0.9
3,608,732	-		Pf1N1B4_3223	0.52	-1.2
3,608,732	-		Pf1N1B4_3223	0.52	+0.2
3,608,732	-				-0.2
3,608,941	-		Pf1N1B4_3223	0.67	+0.4
3,609,019	+		Pf1N1B4_3223	0.73	+0.5
3,609,019	+		Pf1N1B4_3223	0.73	+0.8
3,609,019	+		Pf1N1B4_3223	0.73	-1.3
3,609,020	-		Pf1N1B4_3223	0.73	-1.0
3,609,020	-		Pf1N1B4_3223	0.73	-0.8
3,609,028	+		Pf1N1B4_3223	0.74	-0.5
3,609,028	+		Pf1N1B4_3223	0.74	+3.1
3,609,028	+		Pf1N1B4_3223	0.74	-1.0
3,609,028	+		Pf1N1B4_3223	0.74	-1.2
3,609,028	+		Pf1N1B4_3223	0.74	+0.2
3,609,028	+		Pf1N1B4_3223	0.74	-2.3
3,609,028	+		Pf1N1B4_3223	0.74	+0.4
3,609,028	+		Pf1N1B4_3223	0.74	+0.3
3,609,029	-		Pf1N1B4_3223	0.74	-0.8
3,609,029	-		Pf1N1B4_3223	0.74	-0.2
3,609,029	-		Pf1N1B4_3223	0.74	+1.2
3,609,029	-		Pf1N1B4_3223	0.74	-1.1
3,609,030	+		Pf1N1B4_3223	0.74	-0.2
3,609,030	+		Pf1N1B4_3223	0.74	+0.1
3,609,030	+		Pf1N1B4_3223	0.74	-1.6
3,609,040	+		Pf1N1B4_3223	0.74	-1.8
3,609,040	+		Pf1N1B4_3223	0.74	+0.8
3,609,040	+		Pf1N1B4_3223	0.74	+1.2
3,609,040	+		Pf1N1B4_3223	0.74	-1.3
3,609,112	+		Pf1N1B4_3223	0.80	-0.9
3,609,112	+		Pf1N1B4_3223	0.80	-2.0
3,609,112	+		Pf1N1B4_3223	0.80	-0.2
3,609,112	+		Pf1N1B4_3223	0.80	-1.9
3,609,113	-		Pf1N1B4_3223	0.80	-0.5
3,609,247	+		Pf1N1B4_3223	0.90	+0.2
3,609,247	+		Pf1N1B4_3223	0.90	-0.6
3,609,247	+				-0.5
3,609,247	+		Pf1N1B4_3223	0.90	-1.0
3,609,247	+		Pf1N1B4_3223	0.90	-0.5
3,609,247	+				-0.2
3,609,247	+		Pf1N1B4_3223	0.90	+0.1
3,609,248	-		Pf1N1B4_3223	0.90	-1.1
3,609,251	+				-1.6
3,609,251	+				-1.3
3,609,251	+				-1.8
3,609,252	-				-0.8
3,609,252	-				+3.4
3,609,252	-				+2.2
3,609,274	-				-1.2
3,609,311	+				+2.1
3,609,311	+				-1.3
3,609,311	+				-0.6
3,609,420	+				-0.8
3,609,420	+				+0.2
3,609,420	+				-2.0
3,609,420	+				-1.9
3,609,420	+				+0.0
3,609,420	+				-0.8
3,609,421	-				+1.1
3,609,421	-				-2.4
3,609,433	+				-0.3
3,609,434	-				-1.0
3,609,532	-				-2.3
3,609,532	-				+0.4
3,609,949	+		Pf1N1B4_3224	0.14	-0.5
3,609,994	+		Pf1N1B4_3224	0.16	+0.2
3,609,994	+		Pf1N1B4_3224	0.16	+3.5
3,609,994	+		Pf1N1B4_3224	0.16	-1.2
3,609,994	+		Pf1N1B4_3224	0.16	-0.3
3,609,994	+		Pf1N1B4_3224	0.16	+1.5
3,609,995	-		Pf1N1B4_3224	0.16	+1.8
3,609,995	-		Pf1N1B4_3224	0.16	-1.3
3,610,165	+		Pf1N1B4_3224	0.22	-1.5
3,610,166	-		Pf1N1B4_3224	0.22	+0.2
3,610,166	-		Pf1N1B4_3224	0.22	-1.9
3,610,300	+		Pf1N1B4_3224	0.26	+2.4
3,610,300	+		Pf1N1B4_3224	0.26	+1.4
3,610,300	+		Pf1N1B4_3224	0.26	-0.5
3,610,300	+		Pf1N1B4_3224	0.26	-0.2
3,610,300	+		Pf1N1B4_3224	0.26	-1.3
3,610,300	+		Pf1N1B4_3224	0.26	+1.0
3,610,301	-		Pf1N1B4_3224	0.26	+1.2
3,610,301	-		Pf1N1B4_3224	0.26	+1.3
3,610,301	-		Pf1N1B4_3224	0.26	+1.8
3,610,586	-		Pf1N1B4_3224	0.36	-0.5
3,610,586	-		Pf1N1B4_3224	0.36	-1.2
3,610,804	+		Pf1N1B4_3224	0.44	-1.0
3,610,804	+		Pf1N1B4_3224	0.44	-0.4
3,611,086	+		Pf1N1B4_3224	0.54	+0.0
3,611,087	-		Pf1N1B4_3224	0.54	+0.6
3,611,359	+		Pf1N1B4_3224	0.63	+0.2
3,611,519	-		Pf1N1B4_3224	0.69	+0.8
3,611,791	-		Pf1N1B4_3224	0.79	-0.2
3,611,791	-		Pf1N1B4_3224	0.79	-1.2
3,611,791	-		Pf1N1B4_3224	0.79	-1.2
3,611,829	+		Pf1N1B4_3224	0.80	+2.5
3,612,146	-				-2.6
3,612,146	-				-0.8
3,612,292	+				-0.0
3,612,431	-				+1.3
3,612,465	+				-0.8
3,612,465	+				+0.8
3,612,465	+				+0.3
3,612,465	+				+0.0
3,612,466	-				-0.2
3,612,466	-				+1.2
3,612,466	-				-0.9
3,612,466	-				-1.5
3,612,466	-				+1.4
3,612,466	-				+1.8
3,612,466	-				-1.1
3,612,466	-				+0.8
3,612,540	+				-1.3
3,612,621	+				-0.5
3,612,621	+				+0.8
3,612,621	+				-1.2
3,612,621	+				-0.2
3,612,621	+				+0.6
3,612,622	-				-1.8
3,612,622	-				-0.2
3,612,622	-				+2.8
3,612,625	+				+1.8
3,612,625	+				-1.6
3,612,625	+				-1.1
3,612,625	+				-1.2
3,612,625	+				+0.1
3,612,625	+				-0.1
3,612,625	+				-0.9
3,612,625	+				+0.7
3,612,625	+				+1.1
3,612,626	-				-1.1
3,612,626	-				-1.3
3,612,626	-				-2.3
3,612,626	-				+0.8
3,612,626	-				-0.2
3,612,626	-				-0.2
3,612,626	-				-1.9
3,612,626	-				+2.4
3,612,626	-				-0.4
3,612,626	-				-1.5
3,612,626	-				-0.8
3,612,626	-				-1.8
3,612,626	-				-0.2
3,612,626	-				-1.1
3,612,626	-				-0.9
3,612,626	-				-0.5
3,612,626	-				-1.0
3,612,626	-				-0.5
3,612,626	-				+0.9
3,612,628	+				-0.2
3,612,628	+				+1.7
3,612,628	+				-0.2
3,612,628	+				-2.6
3,612,628	+				-1.6
3,612,628	+				+0.5
3,612,628	+				-1.1
3,612,628	+				-1.0
3,612,628	+				-1.3
3,612,628	+				+0.2
3,612,628	+				-0.5
3,612,628	+				-1.0
3,612,629	-				-0.8
3,612,629	-				+1.0
3,612,629	-				+0.2
3,612,629	-				-1.5
3,612,629	-				-2.1
3,612,629	-				+0.1
3,612,629	-				-0.1
3,612,629	-				+0.1
3,612,629	-				-2.3
3,612,629	-				-1.0
3,612,629	-				-0.8
3,612,629	-				-1.2
3,612,629	-				+1.3
3,612,629	-				+1.0
3,612,629	-				-0.9
3,612,629	-				-1.3
3,612,629	-				+0.6
3,612,629	-				+0.8
3,612,660	+				-0.1
3,613,011	-				-1.6
3,613,011	-				-1.0
3,613,138	-				+1.1
3,613,161	-				+0.4
3,613,161	-		Pf1N1B4_3226	0.53	-0.2
3,613,268	-				+1.2
3,613,282	+				+0.2
3,613,339	-				+1.1
3,613,343	+				-0.7
3,613,343	+				+1.5
3,613,344	-				-0.2