Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3124

Experiment: Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1
3,509,374	+		Pf1N1B4_3123	0.53	+2.1
3,509,374	+		Pf1N1B4_3123	0.53	+0.5
3,509,374	+		Pf1N1B4_3123	0.53	+3.7
3,509,633	-		Pf1N1B4_3123	0.70	-0.4
3,509,633	-		Pf1N1B4_3123	0.70	+0.2
3,509,650	+		Pf1N1B4_3123	0.71	+2.5
3,509,650	+		Pf1N1B4_3123	0.71	+0.2
3,509,651	-		Pf1N1B4_3123	0.71	+0.2
3,509,651	-		Pf1N1B4_3123	0.71	-1.4
3,509,653	+		Pf1N1B4_3123	0.71	-0.4
3,509,653	+		Pf1N1B4_3123	0.71	+1.0
3,509,666	-		Pf1N1B4_3123	0.72	+0.8
3,509,666	-		Pf1N1B4_3123	0.72	+1.6
3,509,695	+		Pf1N1B4_3123	0.74	+1.8
3,509,695	+		Pf1N1B4_3123	0.74	-0.5
3,509,695	+		Pf1N1B4_3123	0.74	+1.8
3,509,696	-		Pf1N1B4_3123	0.74	-0.3
3,509,696	-		Pf1N1B4_3123	0.74	-1.6
3,509,731	+		Pf1N1B4_3123	0.76	-1.5
3,509,732	-		Pf1N1B4_3123	0.76	-2.1
3,509,732	-		Pf1N1B4_3123	0.76	-0.5
3,509,799	+		Pf1N1B4_3123	0.81	-1.9
3,509,803	+		Pf1N1B4_3123	0.81	+0.2
3,509,803	+		Pf1N1B4_3123	0.81	-1.0
3,509,803	+		Pf1N1B4_3123	0.81	-1.0
3,509,804	-		Pf1N1B4_3123	0.81	-0.3
3,509,804	-		Pf1N1B4_3123	0.81	-2.4
3,510,016	+				-0.8
3,510,016	+				+0.2
3,510,016	+				+2.5
3,510,017	-				-0.7
3,510,017	-				-1.5
3,510,017	-				-1.4
3,510,017	-				-1.8
3,510,017	-				-1.0
3,510,067	+				+0.8
3,510,067	+				-1.1
3,510,067	+				+0.4
3,510,067	+				+0.7
3,510,068	-				-1.0
3,510,132	+				+0.2
3,510,132	+				+0.2
3,510,133	-				-1.7
3,510,133	-				-1.2
3,510,179	+				-0.0
3,510,179	+				-1.9
3,510,179	+				+1.3
3,510,180	-				-1.9
3,510,209	-		Pf1N1B4_3124	0.16	-0.7
3,510,272	+		Pf1N1B4_3124	0.34	+2.8
3,510,272	+		Pf1N1B4_3124	0.34	+1.2
3,510,272	+		Pf1N1B4_3124	0.34	+1.4
3,510,273	-		Pf1N1B4_3124	0.35	-2.1
3,510,273	-		Pf1N1B4_3124	0.35	-1.2
3,510,273	-		Pf1N1B4_3124	0.35	+1.4
3,510,273	-		Pf1N1B4_3124	0.35	-0.8
3,510,273	-		Pf1N1B4_3124	0.35	-0.8
3,510,273	-		Pf1N1B4_3124	0.35	-1.0
3,510,273	-		Pf1N1B4_3124	0.35	+0.6
3,510,398	+		Pf1N1B4_3124	0.71	-1.0
3,510,416	+		Pf1N1B4_3124	0.76	-1.9
3,510,611	-		Pf1N1B4_3125	0.39	-0.1
3,510,664	+		Pf1N1B4_3125	0.57	+0.8
3,510,664	+		Pf1N1B4_3125	0.57	+0.6
3,510,664	+		Pf1N1B4_3125	0.57	-0.4
3,510,664	+		Pf1N1B4_3125	0.57	-0.5
3,510,664	+		Pf1N1B4_3125	0.57	-1.8
3,510,664	+		Pf1N1B4_3125	0.57	-1.2
3,510,665	-		Pf1N1B4_3125	0.57	+1.7
3,510,665	-		Pf1N1B4_3125	0.57	-0.5
3,510,665	-		Pf1N1B4_3125	0.57	+2.4
3,510,805	-				+0.5
3,510,805	-				+1.8
3,510,805	-				+0.5
3,511,063	+				-0.5
3,511,422	+		Pf1N1B4_3126	0.28	-2.4
3,511,422	+		Pf1N1B4_3126	0.28	+1.2
3,511,422	+		Pf1N1B4_3126	0.28	+0.4