Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2891

Experiment: Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1
3,245,004	-				-2.3
3,245,018	+				+0.8
3,245,018	+				+0.6
3,245,019	-				+1.8
3,245,019	-				-2.6
3,245,019	-				-0.5
3,245,069	+				-0.8
3,245,070	-				-1.4
3,245,122	+				-1.0
3,245,122	+				+1.9
3,245,122	+				-1.7
3,245,931	+				-0.7
3,245,970	+		Pf1N1B4_2891	0.11	-1.7
3,245,993	+		Pf1N1B4_2891	0.17	+0.8
3,245,993	+				-0.2
3,246,041	+		Pf1N1B4_2891	0.27	-0.9
3,246,042	-		Pf1N1B4_2891	0.27	-1.6
3,246,200	+		Pf1N1B4_2891	0.62	-0.5
3,246,201	-		Pf1N1B4_2891	0.62	-2.3
3,246,266	+		Pf1N1B4_2891	0.77	+0.2
3,246,266	+		Pf1N1B4_2891	0.77	-1.5
3,246,266	+		Pf1N1B4_2891	0.77	-2.2
3,246,355	+				-0.8
3,246,355	+				-1.6
3,246,355	+				-0.3
3,246,355	+				+1.1
3,246,355	+				+2.5
3,246,355	+				+0.5
3,246,355	+				+0.5
3,246,355	+				+0.3
3,246,355	+				+0.9
3,246,355	+				+1.4
3,246,356	-				+0.2
3,246,356	-				-1.9
3,246,356	-				-0.4
3,246,356	-				+0.2
3,246,356	-				-0.9
3,246,356	-				-1.0
3,246,356	-				+0.2
3,246,356	-				-0.2
3,246,890	-				+0.9
3,246,890	-				+1.8
3,246,890	-				-0.9
3,246,890	-				+1.2
3,246,890	-				+1.2
3,246,890	-				-0.7
3,246,894	+				-0.3
3,246,895	-				-1.4
3,246,895	-				+0.2
3,246,895	-				-1.8
3,246,901	+				-2.3
3,246,902	-				-1.3
3,246,904	+				-0.5
3,246,905	-				+2.8
3,246,964	+				+1.2
3,246,964	+				+0.1
3,246,964	+				-1.0
3,246,965	-				-1.5
3,246,965	-				-1.3
3,246,965	-				-0.4
3,246,965	-				-1.7
3,246,986	+				+0.1
3,247,070	+				-0.2
3,247,070	+				+1.2
3,247,070	+				-0.8
3,247,071	-				+3.1
3,247,071	-				+3.9
3,247,086	+				+0.2
3,247,145	+		Pf1N1B4_2893	0.13	-1.2
3,247,146	-		Pf1N1B4_2893	0.13	+0.5
3,247,146	-		Pf1N1B4_2893	0.13	-1.9
3,247,168	+		Pf1N1B4_2893	0.17	+0.3
3,247,168	+		Pf1N1B4_2893	0.17	+0.1
3,247,168	+		Pf1N1B4_2893	0.17	-1.4
3,247,252	-		Pf1N1B4_2893	0.30	-0.7
3,247,307	-		Pf1N1B4_2893	0.38	-2.1
3,247,370	+		Pf1N1B4_2893	0.48	+3.0
3,247,370	+		Pf1N1B4_2893	0.48	-1.0