Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2721

Experiment: Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1
3,059,220	+		Pf1N1B4_2720	0.70	-0.3
3,059,220	+		Pf1N1B4_2720	0.70	-1.4
3,059,220	+		Pf1N1B4_2720	0.70	-0.3
3,059,221	-		Pf1N1B4_2720	0.70	+0.1
3,059,221	-		Pf1N1B4_2720	0.70	+0.3
3,059,287	-		Pf1N1B4_2720	0.74	-1.5
3,059,377	+		Pf1N1B4_2720	0.80	-0.5
3,059,377	+		Pf1N1B4_2720	0.80	+2.2
3,059,377	+		Pf1N1B4_2720	0.80	-0.7
3,059,377	+		Pf1N1B4_2720	0.80	+0.1
3,059,378	-		Pf1N1B4_2720	0.80	+0.9
3,059,378	-		Pf1N1B4_2720	0.80	+0.9
3,059,378	-		Pf1N1B4_2720	0.80	-0.1
3,059,566	+				+0.9
3,059,566	+				+0.1
3,059,566	+				+1.1
3,059,567	-				-0.1
3,059,640	+				+2.9
3,059,640	+				+0.4
3,059,640	+				+0.7
3,059,641	-				+0.3
3,059,733	+				-0.7
3,059,734	-				-1.5
3,059,734	-				+1.3
3,059,734	-				-0.3
3,059,734	-				+0.7
3,059,795	+				-0.0
3,059,796	-				-0.7
3,059,796	-				+1.0
3,059,908	+				-0.1
3,059,999	+				-1.3
3,060,000	-				+2.3
3,060,072	-		Pf1N1B4_2721	0.12	+0.3
3,060,072	-		Pf1N1B4_2721	0.12	-0.5
3,060,072	-		Pf1N1B4_2721	0.12	+1.9
3,060,072	-		Pf1N1B4_2721	0.12	+0.1
3,060,072	-		Pf1N1B4_2721	0.12	-0.7
3,060,072	-		Pf1N1B4_2721	0.12	-1.5
3,060,110	+		Pf1N1B4_2721	0.15	-0.9
3,060,111	-		Pf1N1B4_2721	0.15	+0.4
3,060,137	+		Pf1N1B4_2721	0.17	-0.8
3,060,137	+		Pf1N1B4_2721	0.17	+0.3
3,060,137	+		Pf1N1B4_2721	0.17	-0.3
3,060,137	+		Pf1N1B4_2721	0.17	-0.6
3,060,138	-		Pf1N1B4_2721	0.17	-0.3
3,060,138	-		Pf1N1B4_2721	0.17	+0.2
3,060,138	-		Pf1N1B4_2721	0.17	-1.7
3,060,138	-		Pf1N1B4_2721	0.17	-0.7
3,060,176	+				-0.9
3,060,176	+		Pf1N1B4_2721	0.19	+0.5
3,060,176	+		Pf1N1B4_2721	0.19	+0.3
3,060,176	+		Pf1N1B4_2721	0.19	-1.3
3,060,177	-		Pf1N1B4_2721	0.19	-1.0
3,060,177	-		Pf1N1B4_2721	0.19	-2.6
3,060,263	+		Pf1N1B4_2721	0.25	-0.4
3,060,337	+		Pf1N1B4_2721	0.30	+0.1
3,060,380	+		Pf1N1B4_2721	0.33	+1.9
3,060,381	-		Pf1N1B4_2721	0.33	-1.0
3,060,464	+		Pf1N1B4_2721	0.39	-0.1
3,060,465	-		Pf1N1B4_2721	0.39	+1.3
3,060,465	-		Pf1N1B4_2721	0.39	+1.5
3,060,465	-		Pf1N1B4_2721	0.39	+0.3
3,060,515	+		Pf1N1B4_2721	0.42	+2.3
3,060,515	+		Pf1N1B4_2721	0.42	+0.3
3,060,515	+		Pf1N1B4_2721	0.42	-2.9
3,060,516	-		Pf1N1B4_2721	0.42	-0.5
3,060,689	+				+1.9
3,060,854	+		Pf1N1B4_2721	0.66	+1.3
3,060,854	+		Pf1N1B4_2721	0.66	+1.1
3,060,872	+		Pf1N1B4_2721	0.67	+0.4
3,060,872	+		Pf1N1B4_2721	0.67	-0.7
3,060,872	+		Pf1N1B4_2721	0.67	-0.9
3,060,872	+		Pf1N1B4_2721	0.67	+0.3
3,060,872	+		Pf1N1B4_2721	0.67	+0.5
3,060,872	+		Pf1N1B4_2721	0.67	-0.1
3,060,872	+		Pf1N1B4_2721	0.67	+0.1
3,060,873	-		Pf1N1B4_2721	0.67	-0.1
3,060,873	-		Pf1N1B4_2721	0.67	+1.6
3,060,873	-		Pf1N1B4_2721	0.67	+0.8
3,060,873	-		Pf1N1B4_2721	0.67	+0.3
3,061,034	+		Pf1N1B4_2721	0.78	-1.3
3,061,034	+		Pf1N1B4_2721	0.78	+1.2
3,061,034	+		Pf1N1B4_2721	0.78	+1.1
3,061,034	+		Pf1N1B4_2721	0.78	-1.3
3,061,035	-		Pf1N1B4_2721	0.78	+0.7
3,061,035	-		Pf1N1B4_2721	0.78	-1.7
3,061,035	-		Pf1N1B4_2721	0.78	-0.1
3,061,235	+				-2.2
3,061,235	+				-0.1
3,061,236	-				+0.3
3,061,236	-				+0.1
3,061,236	-				+0.5
3,061,236	-				+1.9
3,061,236	-				+2.1
3,061,390	+				+0.8
3,061,412	+				-0.5
3,061,413	-				-1.9
3,061,732	+		Pf1N1B4_2722	0.48	+1.9
3,061,732	+		Pf1N1B4_2722	0.48	-0.9
3,061,732	+		Pf1N1B4_2722	0.48	-0.8
3,061,732	+		Pf1N1B4_2722	0.48	+0.8
3,061,733	-		Pf1N1B4_2722	0.48	+2.3
3,061,733	-		Pf1N1B4_2722	0.48	+0.4
3,061,733	-		Pf1N1B4_2722	0.48	-1.8
3,061,733	-		Pf1N1B4_2722	0.48	-0.5
3,061,733	-		Pf1N1B4_2722	0.48	+1.6
3,061,733	-		Pf1N1B4_2722	0.48	-1.7
3,061,809	+		Pf1N1B4_2722	0.60	-1.9
3,062,060	+				-1.1
3,062,061	-				+1.9
3,062,062	+				+1.0
3,062,062	+				-0.9
3,062,062	+				+2.2
3,062,062	+				+0.5
3,062,062	+				-0.9
3,062,062	+				-1.3
3,062,063	-				+0.1
3,062,063	-				-1.8
3,062,131	+		Pf1N1B4_2723	0.34	-0.0
3,062,132	-		Pf1N1B4_2723	0.35	+0.8
3,062,294	+				+0.6
3,062,294	+				+0.5
3,062,295	-				-1.5
3,062,309	+				+0.9
3,062,309	+				+0.6
3,062,310	-				-0.7
3,062,310	-				+0.3
3,062,310	-				-0.0
3,062,311	+				-0.7
3,062,311	+				-0.1
3,062,312	-				+1.9
3,062,312	-				+0.3