Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2719

Experiment: Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1
3,054,606	+		Pf1N1B4_2718	0.32	+0.9
3,054,606	+		Pf1N1B4_2718	0.32	-2.4
3,054,606	+		Pf1N1B4_2718	0.32	-1.0
3,054,607	-		Pf1N1B4_2718	0.32	+1.1
3,054,607	-		Pf1N1B4_2718	0.32	-0.5
3,054,607	-		Pf1N1B4_2718	0.32	-0.3
3,054,607	-		Pf1N1B4_2718	0.32	-0.3
3,054,620	+		Pf1N1B4_2718	0.34	-1.5
3,054,620	+		Pf1N1B4_2718	0.34	-0.8
3,054,620	+		Pf1N1B4_2718	0.34	-0.8
3,054,620	+		Pf1N1B4_2718	0.34	-0.3
3,054,620	+		Pf1N1B4_2718	0.34	+2.3
3,054,620	+		Pf1N1B4_2718	0.34	+2.4
3,054,620	+				+0.3
3,054,620	+		Pf1N1B4_2718	0.34	+0.9
3,054,621	-		Pf1N1B4_2718	0.34	-1.8
3,055,091	-				-1.5
3,055,117	+				-1.1
3,055,117	+				-0.9
3,055,161	+				-0.7
3,055,161	+				-1.6
3,055,161	+				-1.1
3,055,161	+				+1.5
3,055,161	+				-1.3
3,055,161	+				+3.9
3,055,161	+				-1.0
3,055,161	+				+0.0
3,055,161	+				+0.9
3,055,161	+				-1.5
3,055,161	+				+0.2
3,055,161	+				-0.1
3,055,161	+				-0.5
3,055,161	+				-1.1
3,055,161	+				-1.1
3,055,162	-				+2.2
3,055,162	-				-0.1
3,055,162	-				+1.9
3,055,162	-				+1.3
3,055,162	-				+0.9
3,055,165	+				-0.5
3,055,165	+				+0.1
3,055,165	+				-2.9
3,055,165	+				-0.1
3,055,165	+				-0.6
3,055,165	+				+0.9
3,055,165	+				+0.3
3,055,165	+				-0.5
3,055,165	+				-1.0
3,055,165	+				-1.3
3,055,166	-				+2.1
3,055,166	-				-1.1
3,055,166	-				+2.3
3,055,185	-				-1.4
3,055,231	+				+2.0
3,055,231	+				+2.3
3,055,232	-				+2.3
3,055,232	-				-1.3
3,055,360	+				-1.0
3,055,361	-				-2.8
3,055,410	+				-1.1
3,055,410	+				-1.8
3,055,410	+				+0.6
3,055,420	+				+0.3
3,055,420	+				+1.3
3,055,420	+				+0.6
3,055,420	+				-0.1
3,055,420	+				+1.9
3,055,420	+				+1.6
3,055,420	+				-2.8
3,055,421	-				+0.0
3,055,421	-				-0.3
3,055,421	-				-1.1
3,055,421	-				+1.3
3,055,421	-				+3.0
3,055,421	-				-1.3
3,055,421	-				-0.1
3,055,421	-				-1.2
3,055,421	-				-1.5
3,055,421	-				+0.4
3,055,421	-				-0.5
3,055,422	+				-0.5
3,055,423	-				+0.4
3,055,423	-				+0.3
3,055,443	-				-0.6
3,055,492	+				+0.4
3,055,492	+				+0.3
3,055,497	+				+0.3
3,055,497	+				-0.3
3,055,497	+				+2.2
3,055,498	-				+1.9
3,055,498	-				+1.5
3,055,498	-				-0.9
3,055,498	-				-1.5
3,055,523	+				+0.8
3,055,523	+				-0.7
3,055,524	-				-0.7
3,055,524	-				-0.6
3,055,524	-				-1.1
3,055,524	-				+1.4
3,055,524	-				+2.4
3,055,535	+				+0.9
3,055,535	+				+2.9
3,055,536	-				-1.3
3,055,541	+				+1.5
3,055,541	+				+0.4
3,055,596	+				+1.5
3,055,597	-				+0.3
3,055,597	-				-0.3
3,055,597	-				-2.0
3,055,704	+				-0.7
3,055,704	+				-1.1
3,055,705	-				+1.2
3,055,782	-				-0.6
3,055,920	+		Pf1N1B4_2719	0.13	-0.6
3,055,920	+		Pf1N1B4_2719	0.13	+0.3
3,055,920	+		Pf1N1B4_2719	0.13	+1.0
3,056,010	+		Pf1N1B4_2719	0.17	-1.7
3,056,010	+		Pf1N1B4_2719	0.17	+1.3
3,056,011	-		Pf1N1B4_2719	0.17	+0.6
3,056,011	-		Pf1N1B4_2719	0.17	-0.4
3,056,011	-				+1.9
3,056,055	+		Pf1N1B4_2719	0.19	-0.8
3,056,096	+		Pf1N1B4_2719	0.21	+3.0
3,056,096	+		Pf1N1B4_2719	0.21	+3.2
3,056,097	-		Pf1N1B4_2719	0.21	+1.9
3,056,145	+		Pf1N1B4_2719	0.23	-0.7
3,056,145	+		Pf1N1B4_2719	0.23	-0.9
3,056,145	+		Pf1N1B4_2719	0.23	-2.7
3,056,146	-		Pf1N1B4_2719	0.23	+2.3
3,056,146	-		Pf1N1B4_2719	0.23	-0.8
3,056,163	+		Pf1N1B4_2719	0.24	+1.9
3,056,163	+		Pf1N1B4_2719	0.24	-0.3
3,056,190	+		Pf1N1B4_2719	0.25	+0.1
3,056,191	-		Pf1N1B4_2719	0.25	-0.6
3,056,191	-		Pf1N1B4_2719	0.25	-2.1
3,056,229	+		Pf1N1B4_2719	0.26	-2.2
3,056,229	+		Pf1N1B4_2719	0.26	-1.7
3,056,229	+		Pf1N1B4_2719	0.26	+0.1
3,056,230	-		Pf1N1B4_2719	0.26	+0.0
3,056,230	-		Pf1N1B4_2719	0.26	-2.5
3,056,230	-		Pf1N1B4_2719	0.26	-1.1
3,056,230	-		Pf1N1B4_2719	0.26	-0.8
3,056,230	-		Pf1N1B4_2719	0.26	+3.4
3,056,235	+		Pf1N1B4_2719	0.27	+0.0
3,056,235	+		Pf1N1B4_2719	0.27	-0.1
3,056,236	-		Pf1N1B4_2719	0.27	-0.9
3,056,236	-		Pf1N1B4_2719	0.27	-2.4
3,056,238	+		Pf1N1B4_2719	0.27	+0.4
3,056,238	+		Pf1N1B4_2719	0.27	+0.9
3,056,238	+		Pf1N1B4_2719	0.27	-2.4
3,056,238	+		Pf1N1B4_2719	0.27	+0.5
3,056,238	+		Pf1N1B4_2719	0.27	+1.3
3,056,238	+		Pf1N1B4_2719	0.27	-0.5
3,056,238	+		Pf1N1B4_2719	0.27	-0.1
3,056,238	+		Pf1N1B4_2719	0.27	-0.1
3,056,238	+		Pf1N1B4_2719	0.27	-0.1
3,056,238	+		Pf1N1B4_2719	0.27	+0.0
3,056,238	+		Pf1N1B4_2719	0.27	+0.1
3,056,238	+		Pf1N1B4_2719	0.27	+0.7
3,056,238	+		Pf1N1B4_2719	0.27	+0.5
3,056,238	+				+0.9
3,056,238	+		Pf1N1B4_2719	0.27	-0.4
3,056,238	+		Pf1N1B4_2719	0.27	-1.1
3,056,238	+		Pf1N1B4_2719	0.27	+0.2
3,056,238	+		Pf1N1B4_2719	0.27	+2.0
3,056,238	+		Pf1N1B4_2719	0.27	-2.0
3,056,238	+		Pf1N1B4_2719	0.27	+0.2
3,056,238	+		Pf1N1B4_2719	0.27	+0.3
3,056,238	+		Pf1N1B4_2719	0.27	-0.2
3,056,238	+		Pf1N1B4_2719	0.27	+1.9
3,056,239	-		Pf1N1B4_2719	0.27	-1.2
3,056,239	-		Pf1N1B4_2719	0.27	+0.5
3,056,239	-		Pf1N1B4_2719	0.27	-0.3
3,056,239	-		Pf1N1B4_2719	0.27	+1.1
3,056,239	-		Pf1N1B4_2719	0.27	+0.3
3,056,239	-		Pf1N1B4_2719	0.27	-1.9
3,056,239	-		Pf1N1B4_2719	0.27	+1.2
3,056,239	-		Pf1N1B4_2719	0.27	-1.6
3,056,239	-		Pf1N1B4_2719	0.27	-1.3
3,056,239	-		Pf1N1B4_2719	0.27	-0.5
3,056,239	-		Pf1N1B4_2719	0.27	+2.4
3,056,239	-		Pf1N1B4_2719	0.27	-0.3
3,056,239	-				+2.3
3,056,239	-		Pf1N1B4_2719	0.27	+0.1
3,056,239	-		Pf1N1B4_2719	0.27	+0.4
3,056,239	-		Pf1N1B4_2719	0.27	-1.5
3,056,239	-		Pf1N1B4_2719	0.27	+0.7
3,056,247	+		Pf1N1B4_2719	0.27	-0.9
3,056,247	+		Pf1N1B4_2719	0.27	-1.2
3,056,247	+		Pf1N1B4_2719	0.27	+1.0
3,056,247	+		Pf1N1B4_2719	0.27	+2.0
3,056,247	+		Pf1N1B4_2719	0.27	-0.5
3,056,247	+		Pf1N1B4_2719	0.27	+2.4
3,056,247	+		Pf1N1B4_2719	0.27	-0.8
3,056,248	-		Pf1N1B4_2719	0.27	-0.9
3,056,248	-		Pf1N1B4_2719	0.27	-1.0
3,056,248	-		Pf1N1B4_2719	0.27	-2.3
3,056,248	-		Pf1N1B4_2719	0.27	-2.2
3,056,248	-		Pf1N1B4_2719	0.27	+0.5
3,056,248	-		Pf1N1B4_2719	0.27	-0.6
3,056,249	+		Pf1N1B4_2719	0.27	+1.3
3,056,249	+		Pf1N1B4_2719	0.27	+0.3
3,056,249	+		Pf1N1B4_2719	0.27	+0.6
3,056,268	+		Pf1N1B4_2719	0.28	-1.1
3,056,268	+		Pf1N1B4_2719	0.28	+0.5
3,056,268	+		Pf1N1B4_2719	0.28	+0.9
3,056,269	-		Pf1N1B4_2719	0.28	-1.3
3,056,269	-		Pf1N1B4_2719	0.28	-1.0
3,056,301	+		Pf1N1B4_2719	0.29	+0.6
3,056,301	+		Pf1N1B4_2719	0.29	+0.6
3,056,301	+		Pf1N1B4_2719	0.29	+0.9
3,056,302	-		Pf1N1B4_2719	0.29	-0.0
3,056,493	+		Pf1N1B4_2719	0.37	-0.7
3,056,494	-		Pf1N1B4_2719	0.38	+1.9
3,056,664	+		Pf1N1B4_2719	0.45	+1.1
3,056,665	-		Pf1N1B4_2719	0.45	+1.1
3,056,665	-		Pf1N1B4_2719	0.45	+0.6
3,056,677	+		Pf1N1B4_2719	0.45	+0.8
3,056,677	+		Pf1N1B4_2719	0.45	-3.1
3,056,677	+		Pf1N1B4_2719	0.45	-1.0
3,056,678	-		Pf1N1B4_2719	0.45	-1.2
3,056,691	+		Pf1N1B4_2719	0.46	-0.3
3,056,691	+		Pf1N1B4_2719	0.46	-2.1
3,056,962	-		Pf1N1B4_2719	0.57	-0.7
3,056,962	-		Pf1N1B4_2719	0.57	-0.6
3,057,058	-		Pf1N1B4_2719	0.61	-1.5
3,057,065	+		Pf1N1B4_2719	0.61	+0.9
3,057,065	+		Pf1N1B4_2719	0.61	+1.1
3,057,065	+		Pf1N1B4_2719	0.61	+3.4
3,057,065	+		Pf1N1B4_2719	0.61	-1.1
3,057,366	+		Pf1N1B4_2719	0.74	-0.5
3,057,366	+		Pf1N1B4_2719	0.74	-1.2
3,057,366	+		Pf1N1B4_2719	0.74	+0.9
3,057,367	-		Pf1N1B4_2719	0.74	-0.6
3,057,367	-		Pf1N1B4_2719	0.74	+3.0
3,057,408	+		Pf1N1B4_2719	0.76	-0.0
3,057,891	+				-1.0
3,058,021	+				+2.7
3,058,021	+				+0.9
3,058,021	+				+0.4
3,058,021	+				+2.3
3,058,022	-				-0.9
3,058,022	-				-1.3
3,058,207	-				+0.7
3,058,213	+				-1.2
3,058,330	-		Pf1N1B4_2720	0.16	-2.7
3,058,428	+		Pf1N1B4_2720	0.22	-2.2
3,058,428	+		Pf1N1B4_2720	0.22	-1.0
3,058,428	+		Pf1N1B4_2720	0.22	-0.5
3,058,428	+		Pf1N1B4_2720	0.22	-0.7
3,058,428	+		Pf1N1B4_2720	0.22	+0.3
3,058,428	+		Pf1N1B4_2720	0.22	+1.2
3,058,429	-		Pf1N1B4_2720	0.22	-2.8
3,058,429	-		Pf1N1B4_2720	0.22	-1.6
3,058,429	-		Pf1N1B4_2720	0.22	-1.9
3,058,695	+		Pf1N1B4_2720	0.39	-1.1
3,058,695	+		Pf1N1B4_2720	0.39	-0.1
3,058,696	-		Pf1N1B4_2720	0.39	-1.6
3,058,696	-		Pf1N1B4_2720	0.39	+0.1
3,058,712	+		Pf1N1B4_2720	0.40	+1.6
3,058,713	-		Pf1N1B4_2720	0.40	-1.0
3,058,713	-		Pf1N1B4_2720	0.40	-0.8
3,058,713	-		Pf1N1B4_2720	0.40	-1.3
3,058,713	-		Pf1N1B4_2720	0.40	-1.5
3,058,830	+		Pf1N1B4_2720	0.47	-2.3
3,058,830	+		Pf1N1B4_2720	0.47	-1.4
3,058,830	+		Pf1N1B4_2720	0.47	-0.6
3,058,830	+		Pf1N1B4_2720	0.47	+0.1
3,058,830	+		Pf1N1B4_2720	0.47	-1.8
3,058,830	+		Pf1N1B4_2720	0.47	+2.5
3,058,830	+		Pf1N1B4_2720	0.47	-1.7
3,058,830	+		Pf1N1B4_2720	0.47	-0.1
3,058,831	-		Pf1N1B4_2720	0.47	+1.1
3,058,831	-		Pf1N1B4_2720	0.47	+0.0
3,058,831	-		Pf1N1B4_2720	0.47	-1.7
3,058,831	-		Pf1N1B4_2720	0.47	-0.1
3,058,831	-		Pf1N1B4_2720	0.47	-2.0
3,058,831	-		Pf1N1B4_2720	0.47	-0.3
3,058,831	-		Pf1N1B4_2720	0.47	-1.6
3,058,831	-		Pf1N1B4_2720	0.47	-1.1
3,058,831	-		Pf1N1B4_2720	0.47	-0.1
3,058,834	+		Pf1N1B4_2720	0.47	+0.1
3,058,834	+		Pf1N1B4_2720	0.47	-0.5
3,058,834	+		Pf1N1B4_2720	0.47	+0.6
3,058,834	+		Pf1N1B4_2720	0.47	-1.3
3,058,834	+		Pf1N1B4_2720	0.47	+0.3
3,058,834	+		Pf1N1B4_2720	0.47	+0.5
3,058,834	+		Pf1N1B4_2720	0.47	-0.1
3,058,834	+		Pf1N1B4_2720	0.47	+0.3
3,058,835	-		Pf1N1B4_2720	0.47	-0.1
3,058,835	-		Pf1N1B4_2720	0.47	-0.8
3,058,835	-		Pf1N1B4_2720	0.47	-1.3
3,058,835	-		Pf1N1B4_2720	0.47	-3.2