Experiment: Varel_Bryant_medium_Glucose with Ramoplanin 0.0015625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0275 and BT0276 are separated by 40 nucleotides BT0276 and BT0277 are separated by 13 nucleotides
BT0275: BT0275 - hypothetical protein (NCBI ptt file), at 316,082 to 317,767
BT0275
BT0276: BT0276 - hypothetical protein (NCBI ptt file), at 317,808 to 319,613
BT0276
BT0277: BT0277 - conserved hypothetical protein (NCBI ptt file), at 319,627 to 321,744
BT0277
Position (kb) 317
318
319
320 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 316.849 kb on + strand, within BT0275 at 316.860 kb on + strand, within BT0275 at 316.861 kb on - strand, within BT0275 at 316.865 kb on - strand, within BT0275 at 316.865 kb on - strand, within BT0275 at 316.868 kb on - strand, within BT0275 at 316.889 kb on - strand, within BT0275 at 316.922 kb on - strand, within BT0275 at 317.024 kb on - strand, within BT0275 at 317.045 kb on - strand, within BT0275 at 317.333 kb on - strand, within BT0275 at 317.421 kb on + strand, within BT0275 at 317.422 kb on - strand, within BT0275 at 317.426 kb on - strand, within BT0275 at 317.579 kb on - strand, within BT0275 at 317.615 kb on - strand at 317.615 kb on - strand at 317.898 kb on + strand at 317.915 kb on - strand at 317.967 kb on - strand at 318.057 kb on - strand, within BT0276 at 318.287 kb on + strand, within BT0276 at 318.325 kb on + strand, within BT0276 at 318.421 kb on - strand, within BT0276 at 318.428 kb on - strand, within BT0276 at 318.660 kb on + strand, within BT0276 at 318.660 kb on + strand, within BT0276 at 318.743 kb on + strand, within BT0276 at 318.792 kb on - strand, within BT0276 at 318.900 kb on - strand, within BT0276 at 318.959 kb on - strand, within BT0276 at 318.996 kb on - strand, within BT0276 at 319.001 kb on - strand, within BT0276 at 319.004 kb on + strand, within BT0276 at 319.062 kb on - strand, within BT0276 at 319.080 kb on - strand, within BT0276 at 319.080 kb on - strand, within BT0276 at 319.134 kb on - strand, within BT0276 at 319.155 kb on - strand, within BT0276 at 319.155 kb on - strand, within BT0276 at 319.170 kb on + strand, within BT0276 at 319.235 kb on + strand, within BT0276 at 319.264 kb on + strand, within BT0276 at 319.265 kb on - strand, within BT0276 at 319.265 kb on - strand, within BT0276 at 319.267 kb on - strand, within BT0276 at 319.296 kb on + strand, within BT0276 at 319.328 kb on - strand, within BT0276 at 319.354 kb on - strand, within BT0276 at 319.443 kb on - strand at 319.503 kb on - strand at 319.589 kb on - strand at 319.594 kb on - strand at 319.594 kb on - strand at 319.686 kb on + strand at 319.724 kb on - strand at 319.806 kb on + strand at 319.807 kb on - strand at 319.810 kb on + strand at 319.901 kb on - strand at 319.949 kb on - strand, within BT0277 at 320.092 kb on - strand, within BT0277 at 320.252 kb on + strand, within BT0277 at 320.252 kb on + strand, within BT0277 at 320.277 kb on + strand, within BT0277 at 320.370 kb on + strand, within BT0277 at 320.429 kb on - strand, within BT0277 at 320.429 kb on - strand, within BT0277 at 320.432 kb on - strand, within BT0277 at 320.435 kb on - strand, within BT0277 at 320.435 kb on - strand, within BT0277 at 320.443 kb on + strand, within BT0277 at 320.536 kb on + strand, within BT0277 at 320.561 kb on + strand, within BT0277 at 320.575 kb on - strand, within BT0277
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Ramoplanin 0.0015625 mM remove 316,849 + BT0275 0.45 -3.0 316,860 + BT0275 0.46 -1.7 316,861 - BT0275 0.46 -2.8 316,865 - BT0275 0.46 -1.3 316,865 - BT0275 0.46 -1.0 316,868 - BT0275 0.47 -1.3 316,889 - BT0275 0.48 +0.4 316,922 - BT0275 0.50 +0.8 317,024 - BT0275 0.56 -0.9 317,045 - BT0275 0.57 +0.6 317,333 - BT0275 0.74 +0.0 317,421 + BT0275 0.79 -2.0 317,422 - BT0275 0.79 +1.3 317,426 - BT0275 0.80 -2.6 317,579 - BT0275 0.89 -2.1 317,615 - +1.0 317,615 - +1.6 317,898 + -0.9 317,915 - +2.0 317,967 - -0.0 318,057 - BT0276 0.14 -1.6 318,287 + BT0276 0.27 -2.0 318,325 + BT0276 0.29 +1.0 318,421 - BT0276 0.34 -1.6 318,428 - BT0276 0.34 -0.7 318,660 + BT0276 0.47 -2.0 318,660 + BT0276 0.47 -1.6 318,743 + BT0276 0.52 -1.8 318,792 - BT0276 0.54 -1.0 318,900 - BT0276 0.60 +2.0 318,959 - BT0276 0.64 -2.8 318,996 - BT0276 0.66 +1.0 319,001 - BT0276 0.66 -1.4 319,004 + BT0276 0.66 -1.6 319,062 - BT0276 0.69 +0.6 319,080 - BT0276 0.70 -0.7 319,080 - BT0276 0.70 +0.0 319,134 - BT0276 0.73 -3.7 319,155 - BT0276 0.75 -2.7 319,155 - BT0276 0.75 -1.6 319,170 + BT0276 0.75 -2.6 319,235 + BT0276 0.79 -1.3 319,264 + BT0276 0.81 -3.0 319,265 - BT0276 0.81 -0.3 319,265 - BT0276 0.81 -1.3 319,267 - BT0276 0.81 -2.6 319,296 + BT0276 0.82 -2.1 319,328 - BT0276 0.84 +0.6 319,354 - BT0276 0.86 +0.6 319,443 - -1.0 319,503 - +1.6 319,589 - -1.0 319,594 - -1.3 319,594 - -1.6 319,686 + -3.0 319,724 - +0.0 319,806 + +0.0 319,807 - +0.0 319,810 + -2.0 319,901 - +1.0 319,949 - BT0277 0.15 -0.4 320,092 - BT0277 0.22 -1.3 320,252 + BT0277 0.30 +1.6 320,252 + BT0277 0.30 -2.3 320,277 + BT0277 0.31 -1.0 320,370 + BT0277 0.35 +0.0 320,429 - BT0277 0.38 +1.0 320,429 - BT0277 0.38 -1.5 320,432 - BT0277 0.38 -2.3 320,435 - BT0277 0.38 -0.6 320,435 - BT0277 0.38 -1.0 320,443 + BT0277 0.39 +0.0 320,536 + BT0277 0.43 -2.0 320,561 + BT0277 0.44 -2.0 320,575 - BT0277 0.45 -2.3
Or see this region's nucleotide sequence