Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_99

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
103,529	+				+0.3
103,705	+		Pf1N1B4_98	0.18	-2.1
103,789	+		Pf1N1B4_98	0.27	-0.1
103,798	+		Pf1N1B4_98	0.28	-1.2
103,798	+		Pf1N1B4_98	0.28	-1.0
103,799	-		Pf1N1B4_98	0.28	+1.1
103,804	+		Pf1N1B4_98	0.29	+1.0
103,804	+		Pf1N1B4_98	0.29	+1.7
103,804	+		Pf1N1B4_98	0.29	+0.9
103,805	-		Pf1N1B4_98	0.29	-1.2
103,805	-		Pf1N1B4_98	0.29	-1.1
103,805	-		Pf1N1B4_98	0.29	+0.0
103,805	-		Pf1N1B4_98	0.29	+0.6
103,805	-				-0.7
103,834	+		Pf1N1B4_98	0.32	+0.4
103,993	+		Pf1N1B4_98	0.48	+2.2
103,993	+		Pf1N1B4_98	0.48	+1.6
103,993	+				-0.4
103,993	+		Pf1N1B4_98	0.48	+0.6
103,994	-		Pf1N1B4_98	0.48	-0.7
103,994	-		Pf1N1B4_98	0.48	-0.6
104,014	+		Pf1N1B4_98	0.50	-0.6
104,014	+		Pf1N1B4_98	0.50	-1.9
104,015	-		Pf1N1B4_98	0.51	+0.5
104,015	-		Pf1N1B4_98	0.51	+0.4
104,056	+		Pf1N1B4_98	0.55	-0.7
104,056	+				+1.6
104,056	+		Pf1N1B4_98	0.55	+0.4
104,057	-		Pf1N1B4_98	0.55	+0.8
104,116	+		Pf1N1B4_98	0.61	+0.6
104,159	-		Pf1N1B4_98	0.66	+1.3
104,191	+		Pf1N1B4_98	0.69	+1.3
104,191	+		Pf1N1B4_98	0.69	+0.1
104,191	+				-0.7
104,192	-		Pf1N1B4_98	0.69	+1.6
104,192	-		Pf1N1B4_98	0.69	+0.5
104,192	-		Pf1N1B4_98	0.69	-1.7
104,192	-		Pf1N1B4_98	0.69	+1.6
104,192	-		Pf1N1B4_98	0.69	-1.7
104,236	+		Pf1N1B4_98	0.74	+1.1
104,236	+		Pf1N1B4_98	0.74	+0.0
104,236	+		Pf1N1B4_98	0.74	-0.9
104,236	+		Pf1N1B4_98	0.74	-0.9
104,237	-		Pf1N1B4_98	0.74	-1.5
104,332	+		Pf1N1B4_98	0.84	-0.4
104,461	+				-0.4
104,485	+				+1.4
104,485	+				-1.1
104,512	-				-0.7
104,715	+		Pf1N1B4_99	0.20	-1.8
104,830	+		Pf1N1B4_99	0.31	-0.5
104,902	+		Pf1N1B4_99	0.38	-0.1
104,902	+		Pf1N1B4_99	0.38	-0.5
104,903	-		Pf1N1B4_99	0.38	-2.0
104,903	-				+1.2
105,020	-		Pf1N1B4_99	0.49	+0.0
105,192	+		Pf1N1B4_99	0.66	-1.8
105,192	+		Pf1N1B4_99	0.66	-0.9
105,255	+		Pf1N1B4_99	0.72	-0.1
105,268	+		Pf1N1B4_99	0.73	-0.1
105,268	+		Pf1N1B4_99	0.73	-0.7
105,269	-		Pf1N1B4_99	0.73	-1.1
105,301	+		Pf1N1B4_99	0.76	-0.7
105,301	+		Pf1N1B4_99	0.76	+2.1
105,301	+		Pf1N1B4_99	0.76	-1.6
105,301	+		Pf1N1B4_99	0.76	-1.2
105,301	+		Pf1N1B4_99	0.76	-0.7
105,302	-				-0.7
105,302	-		Pf1N1B4_99	0.76	+0.3
105,428	-				+0.0
105,657	+				+1.3
105,657	+				+1.4
105,657	+				-1.1
105,658	-				+0.2
105,791	-				-0.3
105,828	-				-0.3
105,828	-				-0.2
105,829	+				-1.3
105,830	-				-0.3
105,830	-				+1.2
105,833	+				+0.0
105,833	+				-1.0
105,833	+				+0.0
105,834	-				+1.2
105,834	-				+0.9
105,834	-				+0.2
105,834	-				+0.6
105,834	-				+0.3
105,834	-				-0.2
105,834	-				-0.5
105,834	-				+0.5
105,845	+				+2.0
105,846	-				-0.1
105,854	+				+0.5
105,885	+		Pf1N1B4_100	0.13	+1.7
105,885	+		Pf1N1B4_100	0.13	-0.3
105,885	+		Pf1N1B4_100	0.13	-0.6
105,886	-		Pf1N1B4_100	0.14	-0.4
106,226	+		Pf1N1B4_101	0.48	+1.3
106,226	+		Pf1N1B4_101	0.48	-0.4
106,227	-		Pf1N1B4_101	0.48	-1.6
106,293	+		Pf1N1B4_101	0.88	-1.9
106,424	+				+0.6
106,424	+				-2.0
106,424	+				+0.1
106,424	+				-0.5
106,428	-				+0.7
106,428	-				+0.4
106,501	+				-0.4
106,502	-				+0.9