Experiment: Nitrate reduction, replicate C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5923 and Pf1N1B4_5924 are separated by 990 nucleotides Pf1N1B4_5924 and Pf1N1B4_5925 are separated by 53 nucleotides Pf1N1B4_5925 and Pf1N1B4_5926 are separated by 38 nucleotides
Pf1N1B4_5923 - PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein, at 368,107 to 368,229
_5923
Pf1N1B4_5924 - hypothetical protein, at 369,220 to 369,531
_5924
Pf1N1B4_5925 - hypothetical protein, at 369,585 to 370,298
_5925
Pf1N1B4_5926 - hypothetical protein, at 370,337 to 371,005
_5926
Position (kb) 369
370 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 368.230 kb on + strand at 368.231 kb on - strand at 368.231 kb on - strand at 368.231 kb on - strand at 368.231 kb on - strand at 368.231 kb on - strand at 368.231 kb on - strand at 368.231 kb on - strand at 368.292 kb on + strand at 368.311 kb on - strand at 368.332 kb on - strand at 368.335 kb on - strand at 368.335 kb on - strand at 368.337 kb on + strand at 368.337 kb on + strand at 368.338 kb on - strand at 368.338 kb on - strand at 368.338 kb on - strand at 368.340 kb on - strand at 368.358 kb on + strand at 368.358 kb on + strand at 368.359 kb on - strand at 368.359 kb on - strand at 368.361 kb on + strand at 368.399 kb on - strand at 368.416 kb on - strand at 368.416 kb on - strand at 368.416 kb on - strand at 368.416 kb on - strand at 368.416 kb on - strand at 368.421 kb on + strand at 368.421 kb on + strand at 368.421 kb on + strand at 368.422 kb on - strand at 368.422 kb on - strand at 368.422 kb on - strand at 368.422 kb on - strand at 368.422 kb on - strand at 368.432 kb on - strand at 368.452 kb on + strand at 368.454 kb on + strand at 368.455 kb on - strand at 368.455 kb on - strand at 368.455 kb on - strand at 368.455 kb on - strand at 368.455 kb on - strand at 368.455 kb on - strand at 368.500 kb on - strand at 368.500 kb on - strand at 368.548 kb on - strand at 368.548 kb on - strand at 368.563 kb on - strand at 368.563 kb on - strand at 368.572 kb on - strand at 368.572 kb on - strand at 368.586 kb on - strand at 368.586 kb on - strand at 368.586 kb on - strand at 368.586 kb on - strand at 368.595 kb on - strand at 368.622 kb on - strand at 368.622 kb on - strand at 368.622 kb on - strand at 368.622 kb on - strand at 368.622 kb on - strand at 368.649 kb on + strand at 368.650 kb on - strand at 368.650 kb on - strand at 368.650 kb on - strand at 368.668 kb on - strand at 368.668 kb on - strand at 368.668 kb on - strand at 368.668 kb on - strand at 368.691 kb on - strand at 368.691 kb on - strand at 368.731 kb on - strand at 368.733 kb on - strand at 368.766 kb on - strand at 368.766 kb on - strand at 368.786 kb on + strand at 368.787 kb on - strand at 368.787 kb on - strand at 368.787 kb on - strand at 368.787 kb on - strand at 368.787 kb on - strand at 368.787 kb on - strand at 368.792 kb on + strand at 368.792 kb on + strand at 368.793 kb on - strand at 368.793 kb on - strand at 368.808 kb on + strand at 368.842 kb on - strand at 368.891 kb on + strand at 368.891 kb on + strand at 368.891 kb on + strand at 368.892 kb on - strand at 368.892 kb on - strand at 368.897 kb on + strand at 368.901 kb on + strand at 368.917 kb on + strand at 368.919 kb on + strand at 368.919 kb on + strand at 368.920 kb on - strand at 368.920 kb on - strand at 368.924 kb on + strand at 368.924 kb on + strand at 368.924 kb on + strand at 368.924 kb on + strand at 368.925 kb on - strand at 368.925 kb on - strand at 368.925 kb on - strand at 369.005 kb on + strand at 369.005 kb on + strand at 369.005 kb on + strand at 369.006 kb on - strand at 369.006 kb on - strand at 369.009 kb on + strand at 369.010 kb on - strand at 369.039 kb on - strand at 369.039 kb on - strand at 369.042 kb on + strand at 369.067 kb on - strand at 369.082 kb on + strand at 369.082 kb on + strand at 369.112 kb on + strand at 369.112 kb on + strand at 369.112 kb on + strand at 369.143 kb on + strand at 369.143 kb on + strand at 369.143 kb on + strand at 369.143 kb on + strand at 369.143 kb on + strand at 369.143 kb on + strand at 369.144 kb on - strand at 369.144 kb on - strand at 369.147 kb on + strand at 369.214 kb on - strand at 369.215 kb on + strand at 369.215 kb on + strand at 369.216 kb on - strand at 369.248 kb on + strand at 369.248 kb on + strand at 369.248 kb on + strand at 369.248 kb on + strand at 369.249 kb on - strand at 369.249 kb on - strand at 369.249 kb on - strand at 369.249 kb on - strand at 369.249 kb on - strand at 369.250 kb on + strand at 369.250 kb on + strand at 369.250 kb on + strand at 369.251 kb on - strand at 369.251 kb on - strand at 369.251 kb on - strand at 369.251 kb on - strand at 369.328 kb on - strand, within Pf1N1B4_5924 at 369.369 kb on + strand, within Pf1N1B4_5924 at 369.369 kb on + strand, within Pf1N1B4_5924 at 369.369 kb on + strand, within Pf1N1B4_5924 at 369.370 kb on - strand, within Pf1N1B4_5924 at 369.371 kb on + strand, within Pf1N1B4_5924 at 369.371 kb on + strand, within Pf1N1B4_5924 at 369.371 kb on + strand, within Pf1N1B4_5924 at 369.371 kb on + strand, within Pf1N1B4_5924 at 369.372 kb on - strand, within Pf1N1B4_5924 at 369.379 kb on + strand, within Pf1N1B4_5924 at 369.407 kb on + strand, within Pf1N1B4_5924 at 369.423 kb on + strand, within Pf1N1B4_5924 at 369.464 kb on + strand, within Pf1N1B4_5924 at 369.464 kb on + strand, within Pf1N1B4_5924 at 369.464 kb on + strand, within Pf1N1B4_5924 at 369.465 kb on - strand, within Pf1N1B4_5924 at 369.465 kb on - strand, within Pf1N1B4_5924 at 369.465 kb on - strand, within Pf1N1B4_5924 at 369.465 kb on - strand, within Pf1N1B4_5924 at 369.529 kb on + strand at 369.529 kb on + strand at 369.529 kb on + strand at 369.529 kb on + strand at 369.530 kb on - strand at 369.563 kb on + strand at 369.563 kb on + strand at 369.564 kb on - strand at 369.564 kb on - strand at 369.564 kb on - strand at 369.564 kb on - strand at 369.564 kb on - strand at 369.564 kb on - strand at 369.564 kb on - strand at 369.564 kb on - strand at 369.564 kb on - strand at 369.590 kb on - strand at 369.645 kb on + strand at 369.646 kb on - strand at 369.723 kb on + strand, within Pf1N1B4_5925 at 369.723 kb on + strand, within Pf1N1B4_5925 at 369.724 kb on - strand, within Pf1N1B4_5925 at 369.724 kb on - strand, within Pf1N1B4_5925 at 369.724 kb on - strand, within Pf1N1B4_5925 at 369.724 kb on - strand, within Pf1N1B4_5925 at 369.724 kb on - strand, within Pf1N1B4_5925 at 369.724 kb on - strand, within Pf1N1B4_5925 at 369.724 kb on - strand, within Pf1N1B4_5925 at 369.724 kb on - strand at 369.726 kb on + strand, within Pf1N1B4_5925 at 369.727 kb on - strand, within Pf1N1B4_5925 at 369.727 kb on - strand, within Pf1N1B4_5925 at 369.727 kb on - strand, within Pf1N1B4_5925 at 369.908 kb on - strand, within Pf1N1B4_5925 at 369.921 kb on - strand, within Pf1N1B4_5925 at 369.921 kb on - strand, within Pf1N1B4_5925 at 369.921 kb on - strand, within Pf1N1B4_5925 at 369.921 kb on - strand, within Pf1N1B4_5925 at 369.966 kb on - strand, within Pf1N1B4_5925 at 369.978 kb on - strand, within Pf1N1B4_5925 at 369.986 kb on - strand, within Pf1N1B4_5925 at 370.024 kb on - strand, within Pf1N1B4_5925 at 370.030 kb on + strand, within Pf1N1B4_5925 at 370.031 kb on - strand, within Pf1N1B4_5925 at 370.031 kb on - strand, within Pf1N1B4_5925 at 370.031 kb on - strand, within Pf1N1B4_5925 at 370.031 kb on - strand, within Pf1N1B4_5925 at 370.078 kb on - strand, within Pf1N1B4_5925 at 370.082 kb on - strand at 370.082 kb on - strand, within Pf1N1B4_5925 at 370.082 kb on - strand, within Pf1N1B4_5925 at 370.082 kb on - strand, within Pf1N1B4_5925 at 370.082 kb on - strand, within Pf1N1B4_5925 at 370.082 kb on - strand, within Pf1N1B4_5925 at 370.082 kb on - strand, within Pf1N1B4_5925 at 370.082 kb on - strand, within Pf1N1B4_5925 at 370.153 kb on - strand, within Pf1N1B4_5925 at 370.153 kb on - strand, within Pf1N1B4_5925 at 370.153 kb on - strand, within Pf1N1B4_5925 at 370.153 kb on - strand, within Pf1N1B4_5925 at 370.153 kb on - strand, within Pf1N1B4_5925 at 370.272 kb on + strand at 370.272 kb on + strand at 370.273 kb on - strand at 370.273 kb on - strand at 370.273 kb on - strand at 370.275 kb on + strand at 370.276 kb on - strand at 370.276 kb on - strand at 370.276 kb on - strand at 370.292 kb on + strand at 370.293 kb on - strand at 370.321 kb on - strand at 370.321 kb on - strand at 370.333 kb on + strand at 370.334 kb on - strand at 370.424 kb on + strand, within Pf1N1B4_5926 at 370.424 kb on + strand, within Pf1N1B4_5926 at 370.424 kb on + strand, within Pf1N1B4_5926 at 370.424 kb on + strand, within Pf1N1B4_5926 at 370.424 kb on + strand, within Pf1N1B4_5926 at 370.425 kb on - strand, within Pf1N1B4_5926 at 370.428 kb on + strand, within Pf1N1B4_5926 at 370.428 kb on + strand, within Pf1N1B4_5926 at 370.429 kb on - strand, within Pf1N1B4_5926 at 370.429 kb on - strand, within Pf1N1B4_5926 at 370.515 kb on + strand, within Pf1N1B4_5926 at 370.516 kb on - strand, within Pf1N1B4_5926
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C remove 368,230 + -0.8 368,231 - -3.4 368,231 - +0.8 368,231 - -0.4 368,231 - +0.8 368,231 - -1.8 368,231 - -0.3 368,231 - -1.7 368,292 + +1.9 368,311 - +0.6 368,332 - +1.5 368,335 - -0.6 368,335 - -1.2 368,337 + +0.9 368,337 + -0.1 368,338 - +0.2 368,338 - -0.7 368,338 - +0.2 368,340 - +0.8 368,358 + -0.6 368,358 + -1.0 368,359 - +1.6 368,359 - -0.5 368,361 + +0.5 368,399 - -1.3 368,416 - -1.5 368,416 - -1.6 368,416 - +0.4 368,416 - -0.5 368,416 - +0.3 368,421 + +0.5 368,421 + +0.8 368,421 + -1.3 368,422 - -1.6 368,422 - +1.1 368,422 - -0.1 368,422 - -0.1 368,422 - -0.6 368,432 - -2.1 368,452 + -0.4 368,454 + -0.1 368,455 - -1.6 368,455 - -2.2 368,455 - +1.8 368,455 - +0.0 368,455 - -0.7 368,455 - +1.1 368,500 - -0.7 368,500 - -1.1 368,548 - -1.1 368,548 - +0.9 368,563 - +1.7 368,563 - +2.1 368,572 - -1.1 368,572 - +0.3 368,586 - +1.3 368,586 - +1.4 368,586 - +1.6 368,586 - +0.5 368,595 - -0.3 368,622 - +1.8 368,622 - +1.9 368,622 - +2.2 368,622 - +2.1 368,622 - +1.5 368,649 + -0.3 368,650 - +2.7 368,650 - +2.0 368,650 - +1.4 368,668 - +1.9 368,668 - +2.7 368,668 - +1.3 368,668 - +2.1 368,691 - +1.8 368,691 - +2.1 368,731 - +2.1 368,733 - +2.3 368,766 - +2.2 368,766 - +2.1 368,786 + -0.6 368,787 - +2.1 368,787 - +1.4 368,787 - +1.2 368,787 - +2.1 368,787 - +0.1 368,787 - +2.5 368,792 + +1.1 368,792 + -0.7 368,793 - +1.9 368,793 - +2.6 368,808 + +0.8 368,842 - +2.5 368,891 + +0.5 368,891 + +1.2 368,891 + +1.1 368,892 - +1.9 368,892 - +2.7 368,897 + +1.0 368,901 + +0.7 368,917 + +0.9 368,919 + +1.0 368,919 + +0.4 368,920 - +2.0 368,920 - +1.4 368,924 + +1.0 368,924 + +0.1 368,924 + +0.4 368,924 + +1.0 368,925 - +2.7 368,925 - +1.3 368,925 - +3.2 369,005 + -2.2 369,005 + -2.3 369,005 + -2.7 369,006 - +3.1 369,006 - +2.0 369,009 + +1.5 369,010 - +1.0 369,039 - +2.7 369,039 - +1.6 369,042 + +1.2 369,067 - +2.0 369,082 + +1.8 369,082 + +1.6 369,112 + +1.7 369,112 + +0.3 369,112 + +1.4 369,143 + +3.1 369,143 + +1.5 369,143 + +1.4 369,143 + +1.6 369,143 + +1.6 369,143 + +1.5 369,144 - +1.7 369,144 - +2.5 369,147 + +1.9 369,214 - +1.3 369,215 + +1.9 369,215 + +2.2 369,216 - +1.7 369,248 + +1.4 369,248 + +0.5 369,248 + +1.9 369,248 + +2.1 369,249 - +1.6 369,249 - +1.2 369,249 - +1.4 369,249 - +1.8 369,249 - +1.0 369,250 + +1.9 369,250 + -0.2 369,250 + +2.1 369,251 - +2.2 369,251 - +2.3 369,251 - +1.5 369,251 - +1.8 369,328 - Pf1N1B4_5924 0.35 +0.0 369,369 + Pf1N1B4_5924 0.48 +1.6 369,369 + Pf1N1B4_5924 0.48 +2.2 369,369 + Pf1N1B4_5924 0.48 +2.5 369,370 - Pf1N1B4_5924 0.48 +1.5 369,371 + Pf1N1B4_5924 0.48 +2.5 369,371 + Pf1N1B4_5924 0.48 +2.5 369,371 + Pf1N1B4_5924 0.48 +2.1 369,371 + Pf1N1B4_5924 0.48 +2.1 369,372 - Pf1N1B4_5924 0.49 +2.2 369,379 + Pf1N1B4_5924 0.51 +2.5 369,407 + Pf1N1B4_5924 0.60 +1.3 369,423 + Pf1N1B4_5924 0.65 +2.1 369,464 + Pf1N1B4_5924 0.78 +1.5 369,464 + Pf1N1B4_5924 0.78 +2.5 369,464 + Pf1N1B4_5924 0.78 +2.3 369,465 - Pf1N1B4_5924 0.79 +2.4 369,465 - Pf1N1B4_5924 0.79 -0.6 369,465 - Pf1N1B4_5924 0.79 +2.7 369,465 - Pf1N1B4_5924 0.79 +1.8 369,529 + +3.5 369,529 + +0.2 369,529 + +0.2 369,529 + +0.1 369,530 - +2.4 369,563 + -0.5 369,563 + +1.9 369,564 - +1.8 369,564 - +0.8 369,564 - +2.3 369,564 - +2.0 369,564 - +2.0 369,564 - +2.1 369,564 - +2.0 369,564 - +2.7 369,564 - +2.2 369,590 - +2.1 369,645 + +0.1 369,646 - +1.9 369,723 + Pf1N1B4_5925 0.19 -2.3 369,723 + Pf1N1B4_5925 0.19 +0.7 369,724 - Pf1N1B4_5925 0.19 +1.8 369,724 - Pf1N1B4_5925 0.19 +1.8 369,724 - Pf1N1B4_5925 0.19 +0.7 369,724 - Pf1N1B4_5925 0.19 +1.5 369,724 - Pf1N1B4_5925 0.19 +1.6 369,724 - Pf1N1B4_5925 0.19 +1.5 369,724 - Pf1N1B4_5925 0.19 +2.1 369,724 - +1.2 369,726 + Pf1N1B4_5925 0.20 -1.0 369,727 - Pf1N1B4_5925 0.20 +1.9 369,727 - Pf1N1B4_5925 0.20 +1.8 369,727 - Pf1N1B4_5925 0.20 +3.0 369,908 - Pf1N1B4_5925 0.45 +2.3 369,921 - Pf1N1B4_5925 0.47 +1.8 369,921 - Pf1N1B4_5925 0.47 +2.0 369,921 - Pf1N1B4_5925 0.47 +1.3 369,921 - Pf1N1B4_5925 0.47 +2.6 369,966 - Pf1N1B4_5925 0.53 +1.7 369,978 - Pf1N1B4_5925 0.55 +2.6 369,986 - Pf1N1B4_5925 0.56 +2.9 370,024 - Pf1N1B4_5925 0.61 +1.0 370,030 + Pf1N1B4_5925 0.62 +0.3 370,031 - Pf1N1B4_5925 0.62 +1.6 370,031 - Pf1N1B4_5925 0.62 +1.7 370,031 - Pf1N1B4_5925 0.62 +0.8 370,031 - Pf1N1B4_5925 0.62 +1.9 370,078 - Pf1N1B4_5925 0.69 +1.5 370,082 - +3.6 370,082 - Pf1N1B4_5925 0.70 +1.6 370,082 - Pf1N1B4_5925 0.70 +2.6 370,082 - Pf1N1B4_5925 0.70 +2.7 370,082 - Pf1N1B4_5925 0.70 +2.1 370,082 - Pf1N1B4_5925 0.70 +2.2 370,082 - Pf1N1B4_5925 0.70 +2.1 370,082 - Pf1N1B4_5925 0.70 +1.8 370,153 - Pf1N1B4_5925 0.80 +1.7 370,153 - Pf1N1B4_5925 0.80 +2.4 370,153 - Pf1N1B4_5925 0.80 +1.2 370,153 - Pf1N1B4_5925 0.80 +2.9 370,153 - Pf1N1B4_5925 0.80 +1.9 370,272 + -1.1 370,272 + -1.0 370,273 - +2.1 370,273 - +2.2 370,273 - +2.3 370,275 + -0.9 370,276 - +1.8 370,276 - +0.8 370,276 - +2.6 370,292 + +0.2 370,293 - +1.7 370,321 - +1.7 370,321 - +2.1 370,333 + +0.4 370,334 - +1.7 370,424 + Pf1N1B4_5926 0.13 +2.6 370,424 + Pf1N1B4_5926 0.13 +2.3 370,424 + Pf1N1B4_5926 0.13 +2.1 370,424 + Pf1N1B4_5926 0.13 +1.9 370,424 + Pf1N1B4_5926 0.13 +1.1 370,425 - Pf1N1B4_5926 0.13 +1.9 370,428 + Pf1N1B4_5926 0.14 +2.2 370,428 + Pf1N1B4_5926 0.14 +1.8 370,429 - Pf1N1B4_5926 0.14 +2.2 370,429 - Pf1N1B4_5926 0.14 +1.5 370,515 + Pf1N1B4_5926 0.27 +2.0 370,516 - Pf1N1B4_5926 0.27 +2.1
Or see this region's nucleotide sequence