Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5055

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
5,598,746	+		Pf1N1B4_5054	0.20	-0.7
5,598,747	-		Pf1N1B4_5054	0.20	+0.7
5,598,747	-		Pf1N1B4_5054	0.20	-1.6
5,599,054	-		Pf1N1B4_5054	0.86	+0.6
5,599,054	-		Pf1N1B4_5054	0.86	+0.9
5,599,111	-				+1.2
5,599,111	-				-0.0
5,599,178	-				+1.0
5,599,337	+		Pf1N1B4_5055	0.27	+1.8
5,599,337	+		Pf1N1B4_5055	0.27	+0.6
5,599,337	+				+1.1
5,599,338	-		Pf1N1B4_5055	0.27	+1.2
5,599,401	-		Pf1N1B4_5055	0.34	+1.2
5,599,401	-				+1.6
5,599,599	-		Pf1N1B4_5055	0.55	+0.3
5,599,756	+		Pf1N1B4_5055	0.72	+0.8
5,599,757	-		Pf1N1B4_5055	0.72	+1.4
5,599,843	+		Pf1N1B4_5055	0.82	+1.4
5,599,844	-		Pf1N1B4_5055	0.82	+0.4
5,599,920	+				-0.2
5,599,921	-				+1.3
5,599,949	+				+0.6
5,599,961	+				+1.9
5,600,195	+				-0.0
5,600,195	+				+1.0
5,600,242	+				-0.1
5,600,335	+				-0.2
5,600,338	+				+0.9
5,600,339	-				+0.6
5,600,369	+				+1.5
5,600,539	+		Pf1N1B4_5056	0.32	+0.9
5,600,635	+		Pf1N1B4_5056	0.46	+0.4
5,600,639	+		Pf1N1B4_5056	0.46	-0.5
5,600,639	+		Pf1N1B4_5056	0.46	+0.3
5,600,640	-				-0.0
5,600,640	-		Pf1N1B4_5056	0.47	-1.2
5,600,728	+		Pf1N1B4_5056	0.59	-0.4
5,600,821	+		Pf1N1B4_5056	0.73	-0.9
5,600,821	+		Pf1N1B4_5056	0.73	+1.4
5,600,826	+				+0.2
5,600,872	+		Pf1N1B4_5056	0.80	-1.3