Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4835

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
5,339,164	+		Pf1N1B4_4834	0.61	+0.2
5,339,164	+		Pf1N1B4_4834	0.61	-2.3
5,339,164	+		Pf1N1B4_4834	0.61	-4.2
5,339,212	+		Pf1N1B4_4834	0.64	-2.0
5,339,213	-		Pf1N1B4_4834	0.64	-2.2
5,339,213	-		Pf1N1B4_4834	0.64	-1.0
5,339,213	-		Pf1N1B4_4834	0.64	+0.5
5,339,213	-				-0.3
5,339,213	-		Pf1N1B4_4834	0.64	-1.5
5,339,347	+		Pf1N1B4_4834	0.74	-2.5
5,339,348	-		Pf1N1B4_4834	0.74	-3.0
5,339,348	-		Pf1N1B4_4834	0.74	-3.0
5,339,404	+		Pf1N1B4_4834	0.78	-2.7
5,339,416	+		Pf1N1B4_4834	0.79	+2.9
5,339,497	+		Pf1N1B4_4834	0.85	+1.7
5,339,498	-		Pf1N1B4_4834	0.85	-0.6
5,339,534	-		Pf1N1B4_4834	0.88	+0.5
5,339,744	+				+0.3
5,339,744	+				-0.8
5,339,744	+				+2.1
5,339,745	-				+0.3
5,339,755	+				-3.2
5,339,875	+				-0.3
5,339,947	+				-1.1
5,339,948	-				-1.5
5,339,948	-				-2.9
5,339,948	-				-2.1
5,339,948	-				-1.5
5,339,953	+				-3.2
5,339,954	-				-2.6
5,339,957	+				-0.8
5,339,968	+				-2.3
5,339,969	-				-2.5
5,339,972	+				-2.5
5,339,973	-				-2.5
5,339,987	-				-2.9
5,340,041	-				-1.3
5,340,041	-				-2.7
5,340,041	-				-0.8
5,340,041	-				-0.5
5,340,041	-				-1.5
5,340,043	-				-0.3
5,340,045	+				-1.9
5,340,046	-				+0.3
5,340,219	+				-1.7
5,340,219	+				-1.9
5,340,220	-				+0.9
5,340,220	-				-3.6
5,340,220	-				-2.9
5,340,220	-				-1.9
5,340,238	-				-1.2
5,340,241	-				+0.2
5,340,324	+		Pf1N1B4_4835	0.12	-4.2
5,340,712	-				-2.5
5,341,920	+		Pf1N1B4_4835	0.89	-1.3
5,341,993	-				-1.8
5,341,993	-				-0.8
5,341,993	-				-2.4
5,342,001	+				-1.0
5,342,066	+				-0.8
5,342,066	+				-1.7
5,342,066	+				-1.8
5,342,066	+				+1.5
5,342,103	-				-0.0
5,342,191	-				-1.3
5,342,242	-		Pf1N1B4_4836	0.41	-1.2
5,342,242	-		Pf1N1B4_4836	0.41	+1.5
5,342,242	-		Pf1N1B4_4836	0.41	-0.8
5,342,252	+		Pf1N1B4_4836	0.46	+0.4
5,342,252	+		Pf1N1B4_4836	0.46	-0.2
5,342,253	-		Pf1N1B4_4836	0.47	+0.1
5,342,253	-		Pf1N1B4_4836	0.47	-2.3
5,342,369	+				-1.2
5,342,461	-		Pf1N1B4_4837	0.44	+0.5
5,342,461	-		Pf1N1B4_4837	0.44	-1.5
5,342,461	-		Pf1N1B4_4837	0.44	+1.5
5,342,536	+		Pf1N1B4_4837	0.88	-1.3
5,342,537	-		Pf1N1B4_4837	0.89	+0.5
5,342,537	-		Pf1N1B4_4837	0.89	-1.4
5,342,537	-		Pf1N1B4_4837	0.89	+2.3
5,342,611	-				-0.0
5,342,716	-				-0.3
5,342,716	-				-1.4
5,342,748	-				-1.0
5,342,789	-				-0.8
5,343,022	-				-1.4
5,343,022	-				+0.1
5,343,023	+				-0.4