Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4654

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
5,131,111	-				+1.7
5,131,222	+				-0.2
5,131,222	+				+0.4
5,131,222	+				-0.7
5,131,370	-		Pf1N1B4_4652	0.38	-1.0
5,132,003	-				-0.0
5,132,109	-				-0.2
5,132,282	+		Pf1N1B4_4654	0.16	-2.8
5,132,379	-		Pf1N1B4_4654	0.23	-0.7
5,132,454	-		Pf1N1B4_4654	0.28	-1.2
5,132,516	+		Pf1N1B4_4654	0.32	-0.9
5,132,569	-		Pf1N1B4_4654	0.36	-1.6
5,132,715	-		Pf1N1B4_4654	0.46	-0.7
5,132,715	-		Pf1N1B4_4654	0.46	+0.8
5,132,762	+		Pf1N1B4_4654	0.49	-1.6
5,132,762	+				-2.3
5,132,795	+		Pf1N1B4_4654	0.51	-0.4
5,132,795	+				-0.4
5,132,795	+		Pf1N1B4_4654	0.51	-1.7
5,132,796	-		Pf1N1B4_4654	0.51	-1.9
5,132,798	+				-1.2
5,132,798	+		Pf1N1B4_4654	0.52	-0.0
5,132,798	+		Pf1N1B4_4654	0.52	-2.6
5,132,799	-		Pf1N1B4_4654	0.52	-1.9
5,132,799	-		Pf1N1B4_4654	0.52	-0.7
5,132,799	-				+1.0
5,132,799	-		Pf1N1B4_4654	0.52	-0.9
5,132,853	-		Pf1N1B4_4654	0.55	-1.7
5,132,888	+		Pf1N1B4_4654	0.58	-1.7
5,132,993	+		Pf1N1B4_4654	0.65	-2.3
5,132,993	+		Pf1N1B4_4654	0.65	-1.7
5,133,230	+		Pf1N1B4_4654	0.81	-1.5
5,133,233	+		Pf1N1B4_4654	0.81	+2.0
5,133,233	+		Pf1N1B4_4654	0.81	-0.2
5,133,233	+		Pf1N1B4_4654	0.81	-1.5
5,133,402	+				-0.0
5,133,403	-				+2.8
5,133,403	-				-0.7
5,133,434	+				+1.3
5,133,434	+				-0.3
5,133,434	+				-0.0
5,133,435	-				+2.4
5,133,435	-				+0.6
5,133,438	+				-1.2
5,133,440	+				+2.6
5,133,440	+				+1.6
5,133,441	-				-0.9
5,133,441	-				-0.6
5,133,441	-				-2.2
5,133,532	-				-0.1
5,133,676	+				+0.1
5,133,676	+				-0.0
5,133,676	+				+2.0
5,133,676	+				+1.3
5,133,676	+				+0.7
5,133,853	+				+0.1
5,133,853	+				-0.6
5,133,853	+				+1.6
5,133,853	+				-0.1
5,133,853	+				+1.1
5,133,854	-				+1.1
5,133,854	-				+2.6
5,133,854	-				+0.1
5,133,854	-				+0.8
5,133,859	+				-0.3
5,133,869	-				+0.3
5,133,985	+				+1.2
5,133,985	+				-1.4
5,133,986	-				+0.2
5,133,986	-				+0.8
5,134,003	+				+0.1
5,134,004	-				-0.0
5,134,081	+		Pf1N1B4_4656	0.14	+1.1
5,134,082	-		Pf1N1B4_4656	0.14	+0.4
5,134,411	+		Pf1N1B4_4656	0.34	-0.7
5,134,418	-		Pf1N1B4_4656	0.34	-0.5