Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4189

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
4,637,052	+		Pf1N1B4_4188	0.11	-0.3
4,637,096	+		Pf1N1B4_4188	0.17	+0.6
4,637,096	+		Pf1N1B4_4188	0.17	+1.3
4,637,096	+		Pf1N1B4_4188	0.17	+0.7
4,637,096	+		Pf1N1B4_4188	0.17	-0.8
4,637,096	+		Pf1N1B4_4188	0.17	-0.0
4,637,097	-		Pf1N1B4_4188	0.17	-1.9
4,637,105	+		Pf1N1B4_4188	0.19	+0.5
4,637,105	+		Pf1N1B4_4188	0.19	-0.6
4,637,106	-		Pf1N1B4_4188	0.19	-0.1
4,637,123	+		Pf1N1B4_4188	0.21	+0.3
4,637,138	+		Pf1N1B4_4188	0.23	-0.7
4,637,138	+		Pf1N1B4_4188	0.23	-0.4
4,637,234	+		Pf1N1B4_4188	0.37	-0.7
4,637,234	+		Pf1N1B4_4188	0.37	+0.8
4,637,234	+		Pf1N1B4_4188	0.37	-2.0
4,637,276	+		Pf1N1B4_4188	0.43	-1.3
4,637,276	+		Pf1N1B4_4188	0.43	-0.7
4,637,276	+		Pf1N1B4_4188	0.43	+0.5
4,637,348	+				+1.8
4,637,500	+		Pf1N1B4_4188	0.74	-0.3
4,637,500	+		Pf1N1B4_4188	0.74	+1.8
4,637,500	+		Pf1N1B4_4188	0.74	-0.8
4,637,500	+		Pf1N1B4_4188	0.74	+0.6
4,637,500	+		Pf1N1B4_4188	0.74	-1.4
4,637,500	+		Pf1N1B4_4188	0.74	-0.2
4,637,500	+		Pf1N1B4_4188	0.74	-0.7
4,637,501	-		Pf1N1B4_4188	0.74	-1.0
4,637,504	+		Pf1N1B4_4188	0.75	-1.2
4,637,504	+		Pf1N1B4_4188	0.75	-1.2
4,637,504	+		Pf1N1B4_4188	0.75	-1.0
4,637,504	+				+0.6
4,637,504	+		Pf1N1B4_4188	0.75	-0.7
4,637,505	-		Pf1N1B4_4188	0.75	-0.7
4,637,529	+		Pf1N1B4_4188	0.78	+0.1
4,637,529	+		Pf1N1B4_4188	0.78	-0.4
4,637,529	+		Pf1N1B4_4188	0.78	+0.2
4,637,529	+		Pf1N1B4_4188	0.78	+1.5
4,637,529	+		Pf1N1B4_4188	0.78	-1.1
4,637,529	+		Pf1N1B4_4188	0.78	-0.2
4,637,529	+		Pf1N1B4_4188	0.78	-1.9
4,637,529	+		Pf1N1B4_4188	0.78	+0.2
4,637,529	+		Pf1N1B4_4188	0.78	-0.4
4,637,530	-		Pf1N1B4_4188	0.78	+0.3
4,637,533	+		Pf1N1B4_4188	0.79	-0.7
4,637,533	+				+0.4
4,637,533	+		Pf1N1B4_4188	0.79	-1.3
4,637,533	+		Pf1N1B4_4188	0.79	+0.6
4,637,533	+		Pf1N1B4_4188	0.79	-0.2
4,637,533	+		Pf1N1B4_4188	0.79	+2.2
4,637,533	+		Pf1N1B4_4188	0.79	-0.4
4,637,533	+		Pf1N1B4_4188	0.79	+0.8
4,637,533	+		Pf1N1B4_4188	0.79	+0.5
4,637,533	+		Pf1N1B4_4188	0.79	-0.1
4,637,533	+				-0.4
4,637,533	+		Pf1N1B4_4188	0.79	+0.2
4,637,533	+		Pf1N1B4_4188	0.79	+0.3
4,637,533	+		Pf1N1B4_4188	0.79	-0.1
4,637,533	+		Pf1N1B4_4188	0.79	-0.5
4,637,533	+		Pf1N1B4_4188	0.79	+0.3
4,637,533	+		Pf1N1B4_4188	0.79	+1.2
4,637,533	+		Pf1N1B4_4188	0.79	-0.2
4,637,533	+		Pf1N1B4_4188	0.79	-0.4
4,637,533	+		Pf1N1B4_4188	0.79	+0.8
4,637,533	+		Pf1N1B4_4188	0.79	-0.9
4,637,533	+		Pf1N1B4_4188	0.79	+0.8
4,637,533	+		Pf1N1B4_4188	0.79	+0.6
4,637,533	+		Pf1N1B4_4188	0.79	+0.6
4,637,533	+		Pf1N1B4_4188	0.79	-0.9
4,637,533	+		Pf1N1B4_4188	0.79	+0.2
4,637,533	+		Pf1N1B4_4188	0.79	-1.2
4,637,533	+		Pf1N1B4_4188	0.79	-0.4
4,637,533	+		Pf1N1B4_4188	0.79	-0.0
4,637,533	+		Pf1N1B4_4188	0.79	+1.2
4,637,533	+		Pf1N1B4_4188	0.79	+0.4
4,637,533	+		Pf1N1B4_4188	0.79	-0.2
4,637,533	+		Pf1N1B4_4188	0.79	-2.2
4,637,533	+		Pf1N1B4_4188	0.79	-1.1
4,637,533	+		Pf1N1B4_4188	0.79	+1.3
4,637,533	+		Pf1N1B4_4188	0.79	-1.2
4,637,533	+		Pf1N1B4_4188	0.79	-1.0
4,637,533	+		Pf1N1B4_4188	0.79	+0.7
4,637,533	+		Pf1N1B4_4188	0.79	-0.9
4,637,533	+		Pf1N1B4_4188	0.79	-1.6
4,637,534	-		Pf1N1B4_4188	0.79	+0.6
4,637,534	-		Pf1N1B4_4188	0.79	+0.4
4,637,534	-		Pf1N1B4_4188	0.79	-1.1
4,637,534	-		Pf1N1B4_4188	0.79	-0.2
4,637,534	-				-1.3
4,637,534	-		Pf1N1B4_4188	0.79	+0.7
4,637,534	-		Pf1N1B4_4188	0.79	-1.9
4,637,534	-		Pf1N1B4_4188	0.79	+0.2
4,637,534	-				+0.6
4,637,534	-		Pf1N1B4_4188	0.79	+1.0
4,637,534	-		Pf1N1B4_4188	0.79	+0.2
4,637,534	-				+1.2
4,637,534	-		Pf1N1B4_4188	0.79	-0.6
4,637,534	-		Pf1N1B4_4188	0.79	+2.6
4,637,537	+		Pf1N1B4_4188	0.79	+1.0
4,637,537	+		Pf1N1B4_4188	0.79	+0.4
4,637,537	+		Pf1N1B4_4188	0.79	+0.6
4,637,681	+				-0.1
4,637,681	+				-0.0
4,637,739	+				+1.0
4,637,739	+				+0.1
4,637,754	+				-3.0
4,637,765	+				+1.1
4,637,804	+				-0.0
4,637,846	+				+0.6
4,637,846	+				-0.0
4,637,846	+				+0.3
4,637,846	+				+1.3
4,637,846	+				-1.0
4,637,846	+				-0.7
4,637,846	+				-0.4
4,637,846	+				-0.7
4,637,846	+				+0.8
4,637,847	-				-0.3
4,637,847	-				+0.7
4,637,847	-				+0.6
4,637,848	+				-0.8
4,637,848	+				+0.1
4,637,848	+				+0.6
4,637,848	+				-0.0
4,637,848	+				-0.6
4,637,848	+				-1.4
4,637,848	+				+1.6
4,637,848	+				-0.3
4,637,848	+				-0.7
4,637,849	-				-2.9
4,637,849	-				+0.2
4,637,902	+				-0.0
4,637,902	+				-0.2
4,637,902	+				-1.4
4,637,902	+				+0.4
4,637,903	-				-0.6
4,637,989	+				-0.3
4,637,989	+				+1.4
4,637,990	-				-0.2
4,638,007	-				+1.3
4,638,262	+		Pf1N1B4_4189	0.16	+1.0
4,638,682	-		Pf1N1B4_4189	0.41	-0.7
4,638,851	-		Pf1N1B4_4189	0.52	+0.7
4,639,175	+		Pf1N1B4_4189	0.71	-1.0
4,639,201	+		Pf1N1B4_4189	0.73	-0.2
4,639,467	+		Pf1N1B4_4189	0.89	-0.8
4,639,467	+		Pf1N1B4_4189	0.89	+1.0
4,639,468	-		Pf1N1B4_4189	0.89	+0.2
4,639,471	+		Pf1N1B4_4189	0.89	-0.8
4,639,471	+		Pf1N1B4_4189	0.89	-0.2
4,639,522	+				-0.9
4,639,645	+				-1.2
4,639,645	+				-1.2
4,639,645	+				-1.4
4,639,645	+				+0.8
4,639,645	+				+0.4
4,639,646	-				-0.5
4,639,646	-				-1.1
4,639,646	-				-0.7
4,639,804	+				-0.0
4,639,805	-				+0.9
4,639,805	-				-0.0
4,639,805	-				+1.2
4,639,805	-				-0.3
4,639,805	-				-2.4
4,639,841	+				-0.9
4,639,848	-				-0.4
4,639,848	-				+1.6
4,639,848	-				-0.4
4,639,848	-				-0.9
4,639,848	-				+1.3
4,639,865	+				-1.7
4,639,865	+				+1.4
4,639,866	-				-0.2
4,640,051	-				-0.7
4,640,238	-				-0.7
4,640,238	-				-0.2
4,640,238	-				-0.7
4,640,259	-				+3.4
4,640,304	-				-0.6
4,640,304	-				-2.0
4,640,304	-				-0.4
4,640,309	+				+0.6
4,640,310	-				-1.4
4,640,465	+				-2.0
4,640,466	-				+1.0