Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4143

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
4,587,862	+				+0.4
4,587,863	-				-0.6
4,587,878	+				-0.1
4,587,879	-				+0.6
4,587,879	-				-1.2
4,587,891	+				-1.5
4,588,042	-				-0.2
4,588,158	+				+1.1
4,588,158	+				-0.0
4,588,159	-				+0.3
4,588,159	-				-0.7
4,588,159	-				-0.1
4,588,159	-				+1.0
4,588,159	-				+2.0
4,588,159	-				+2.2
4,588,162	+				-0.5
4,588,163	-				-1.7
4,588,170	-				-0.4
4,588,183	+				+1.9
4,588,183	+				-0.4
4,588,184	-				+0.8
4,588,196	-				+0.1
4,588,209	+				-1.7
4,588,209	+				+0.6
4,588,210	-				-1.0
4,588,210	-				-0.4
4,588,210	-				+0.1
4,588,295	+				-1.0
4,588,296	-				-1.5
4,588,424	+				-0.4
4,588,424	+				-0.4
4,588,425	-				+1.4
4,588,425	-				-2.0
4,588,437	-				-0.3
4,588,464	-				+0.3
4,588,528	+				-0.9
4,588,632	-				-0.0
4,588,675	-				+0.4
4,588,675	-				-0.3
4,588,809	-		Pf1N1B4_4143	0.36	-0.2
4,588,865	+		Pf1N1B4_4143	0.54	+1.6
4,588,865	+		Pf1N1B4_4143	0.54	-0.5
4,588,866	-		Pf1N1B4_4143	0.54	+1.6
4,588,866	-		Pf1N1B4_4143	0.54	+1.3
4,588,866	-				-1.7
4,588,926	+		Pf1N1B4_4143	0.74	-1.0
4,588,979	-				-0.0
4,589,053	+				+0.6
4,589,054	-				-0.6
4,589,054	-				-1.4
4,589,058	-				-0.5
4,589,058	-				-1.3
4,589,058	-				-1.0
4,589,058	-				+1.6
4,589,058	-				-0.3
4,589,069	-				+1.3
4,589,168	+				+0.1
4,589,168	+				-0.4
4,589,169	-				+0.8
4,589,198	+				+2.2
4,589,199	-				+0.2
4,589,248	+		Pf1N1B4_4144	0.18	+1.0
4,589,339	+				+1.1
4,589,433	+				-0.7
4,589,433	+				-1.6
4,589,433	+				-1.9
4,589,434	-				+0.1
4,589,528	+				-1.9
4,589,566	+				-0.3
4,589,567	-				-0.3
4,589,678	-				+0.6
4,589,721	+				-1.3
4,589,839	-				-0.7
4,589,870	-				+1.2
4,589,896	+				+1.3
4,589,896	+				-0.2
4,589,897	-				+2.0
4,589,897	-				+0.6
4,589,897	-				-0.9
4,589,900	-				+1.4