Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4052

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
4,504,073	+		Pf1N1B4_4051	0.78	+0.9
4,504,073	+		Pf1N1B4_4051	0.78	-0.5
4,504,472	+				-2.3
4,504,472	+				-0.8
4,504,472	+				-1.4
4,504,506	+				+1.9
4,504,506	+				-0.7
4,504,508	+				+1.2
4,504,508	+				-0.3
4,504,560	+				+0.1
4,504,692	-				-0.8
4,504,727	+				-1.0
4,504,769	+				+3.0
4,504,770	-				-0.4
4,504,771	+				-0.1
4,504,771	+				+0.2
4,504,771	+				+1.2
4,504,771	+				+0.3
4,504,771	+				-0.9
4,504,771	+				-0.8
4,504,771	+				+0.0
4,504,771	+				+0.6
4,504,771	+				-0.8
4,504,771	+				+1.6
4,504,771	+				+1.4
4,504,771	+				+0.6
4,504,771	+				-1.5
4,504,771	+				+0.3
4,504,771	+				-0.1
4,504,771	+				-1.0
4,504,771	+				+0.8
4,504,772	-				+0.6
4,504,772	-				+0.7
4,504,772	-				-0.4
4,504,772	-				+1.6
4,504,772	-				-1.0
4,504,772	-				-0.2
4,504,775	+				-0.8
4,504,775	+				+0.5
4,504,775	+				-1.0
4,504,775	+				-0.5
4,504,775	+				-0.6
4,504,775	+				-0.4
4,504,775	+				-1.0
4,504,775	+				-0.8
4,504,776	-				+2.3
4,504,776	-				-1.4
4,504,776	-				-0.4
4,504,776	-				-1.8
4,504,776	-				+1.6
4,504,776	-				+0.6
4,504,776	-				+0.6
4,504,780	-				+1.4
4,504,805	-				+0.6
4,504,805	-				-2.9
4,504,805	-				+0.6
4,504,830	+				+1.5
4,504,830	+				-1.5
4,504,830	+				+1.3
4,504,856	+				+1.3
4,504,856	+				-1.0
4,504,910	+				+1.2
4,504,910	+				+1.0
4,504,911	-				+4.0
4,504,911	-				-0.5
4,504,911	-				-1.0
4,504,911	-				-1.9
4,504,911	-				+0.1
4,504,911	-				-2.0
4,504,952	+				-1.2
4,504,952	+				+0.6
4,504,952	+				+0.6
4,504,952	+				-0.2
4,504,952	+				-0.4
4,504,953	-				+0.3
4,504,971	+				+0.5
4,504,972	-				-0.4
4,504,972	-				-0.8
4,504,981	-				+0.2
4,505,022	-				-2.4
4,505,022	-				+0.6
4,505,022	-				-0.5
4,505,140	+				-0.9
4,505,141	-				-1.0
4,505,153	-		Pf1N1B4_4052	0.10	-0.7
4,505,237	+		Pf1N1B4_4052	0.17	-1.2
4,505,315	+		Pf1N1B4_4052	0.23	-2.0
4,505,315	+		Pf1N1B4_4052	0.23	-0.9
4,505,315	+		Pf1N1B4_4052	0.23	-1.9
4,505,315	+		Pf1N1B4_4052	0.23	-0.4
4,505,316	-		Pf1N1B4_4052	0.23	-2.2
4,505,316	-		Pf1N1B4_4052	0.23	-2.0
4,505,319	+		Pf1N1B4_4052	0.23	+0.9
4,505,319	+		Pf1N1B4_4052	0.23	-2.4
4,505,319	+				+0.6
4,505,320	-		Pf1N1B4_4052	0.23	-1.2
4,505,405	+		Pf1N1B4_4052	0.30	-0.1
4,505,405	+		Pf1N1B4_4052	0.30	-0.5
4,505,405	+		Pf1N1B4_4052	0.30	-0.1
4,505,405	+		Pf1N1B4_4052	0.30	-0.5
4,505,405	+		Pf1N1B4_4052	0.30	-0.9
4,505,405	+				-2.0
4,505,406	-		Pf1N1B4_4052	0.30	-1.6
4,505,406	-		Pf1N1B4_4052	0.30	+1.0
4,505,510	+		Pf1N1B4_4052	0.38	-2.1
4,505,510	+		Pf1N1B4_4052	0.38	+0.0
4,505,510	+		Pf1N1B4_4052	0.38	-0.3
4,505,511	-				-1.0
4,505,677	+		Pf1N1B4_4052	0.52	-1.6
4,505,678	+		Pf1N1B4_4052	0.52	-0.8
4,505,678	+		Pf1N1B4_4052	0.52	-2.0
4,505,678	+		Pf1N1B4_4052	0.52	-0.4
4,505,679	-		Pf1N1B4_4052	0.52	-1.8
4,505,679	-		Pf1N1B4_4052	0.52	-1.5
4,505,918	+		Pf1N1B4_4052	0.71	-1.7
4,505,954	+		Pf1N1B4_4052	0.74	-1.5
4,505,955	-		Pf1N1B4_4052	0.74	-0.4
4,505,955	-		Pf1N1B4_4052	0.74	+0.0
4,506,065	+		Pf1N1B4_4052	0.83	-1.8
4,506,203	+				+0.8
4,506,203	+				-1.0
4,506,203	+				-1.2
4,506,204	-				-1.1
4,506,204	-				-1.7
4,506,281	+				+0.6
4,506,281	+				-1.3
4,506,281	+				+0.6
4,506,282	-				-1.5
4,506,487	+		Pf1N1B4_4053	0.50	-0.1
4,506,488	-		Pf1N1B4_4053	0.51	-1.0
4,506,512	-		Pf1N1B4_4053	0.59	-2.7
4,506,555	+		Pf1N1B4_4053	0.74	-1.7
4,506,555	+		Pf1N1B4_4053	0.74	+0.3
4,506,556	-		Pf1N1B4_4053	0.75	+0.6
4,506,556	-		Pf1N1B4_4053	0.75	-4.1
4,506,556	-		Pf1N1B4_4053	0.75	-2.5
4,506,663	+				+1.3
4,506,664	-				-0.7
4,506,686	+				-1.5
4,506,687	-				-0.7
4,506,687	-				-1.8
4,506,698	+				+0.4
4,506,739	-				+1.9
4,506,821	+				+0.6
4,506,821	+				+0.8
4,506,822	-				+2.5
4,506,822	-				-2.2
4,506,876	+				-1.5
4,506,903	+				+0.5
4,506,903	+				-0.6
4,506,943	+				-0.0
4,506,954	+				-1.0
4,506,971	+				-3.3
4,506,971	+				-1.3
4,506,971	+				-1.1
4,506,971	+				-1.1
4,506,971	+				-2.0
4,506,971	+				-1.4
4,506,971	+				-0.1
4,506,971	+				-2.1
4,506,971	+				-1.4
4,506,971	+				-0.9
4,506,971	+				-1.0
4,506,971	+				-0.8
4,506,972	-				-2.0
4,506,972	-				-2.1
4,506,998	+		Pf1N1B4_4054	0.12	-0.6
4,506,998	+		Pf1N1B4_4054	0.12	-0.2
4,506,998	+		Pf1N1B4_4054	0.12	-0.1
4,506,998	+		Pf1N1B4_4054	0.12	-1.8
4,506,998	+		Pf1N1B4_4054	0.12	+0.0
4,506,999	-		Pf1N1B4_4054	0.13	-1.0
4,506,999	-		Pf1N1B4_4054	0.13	-0.7
4,507,104	+		Pf1N1B4_4054	0.55	-1.2
4,507,104	+		Pf1N1B4_4054	0.55	-0.4
4,507,104	+		Pf1N1B4_4054	0.55	+0.6
4,507,104	+		Pf1N1B4_4054	0.55	-2.1
4,507,104	+		Pf1N1B4_4054	0.55	-1.2
4,507,104	+		Pf1N1B4_4054	0.55	+0.1
4,507,104	+		Pf1N1B4_4054	0.55	-1.0
4,507,104	+		Pf1N1B4_4054	0.55	+0.7
4,507,104	+		Pf1N1B4_4054	0.55	+1.0
4,507,104	+		Pf1N1B4_4054	0.55	-1.6
4,507,104	+		Pf1N1B4_4054	0.55	-1.0
4,507,105	-		Pf1N1B4_4054	0.56	-0.2
4,507,160	+		Pf1N1B4_4054	0.78	-2.1
4,507,244	-				-1.7