Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3979

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
4,419,224	+		Pf1N1B4_3978	0.56	+1.6
4,419,224	+		Pf1N1B4_3978	0.56	+0.5
4,419,225	-		Pf1N1B4_3978	0.56	-0.4
4,419,225	-		Pf1N1B4_3978	0.56	-0.1
4,419,225	-		Pf1N1B4_3978	0.56	+3.0
4,419,406	+		Pf1N1B4_3978	0.73	-0.3
4,419,406	+		Pf1N1B4_3978	0.73	-1.1
4,419,407	-				-0.4
4,419,407	-		Pf1N1B4_3978	0.73	-0.6
4,419,954	+				+0.5
4,419,955	-				-1.2
4,419,964	+				+0.3
4,419,964	+				-0.4
4,419,965	-				-0.4
4,420,035	+				-0.4
4,420,035	+				+0.3
4,420,035	+				+0.3
4,420,035	+				+0.4
4,420,035	+				-0.6
4,420,038	+				-1.6
4,420,038	+				-0.1
4,420,038	+				-2.1
4,420,038	+				-0.3
4,420,039	-				-0.2
4,420,121	-				-0.1
4,420,121	-				+1.2
4,420,121	-				-1.8
4,420,315	+		Pf1N1B4_3979	0.11	+1.1
4,420,382	-		Pf1N1B4_3979	0.17	+1.6
4,420,382	-		Pf1N1B4_3979	0.17	-0.2
4,420,382	-		Pf1N1B4_3979	0.17	-0.5
4,420,427	-		Pf1N1B4_3979	0.20	-0.5
4,420,438	+		Pf1N1B4_3979	0.21	-1.0
4,420,480	+		Pf1N1B4_3979	0.24	+2.0
4,420,480	+		Pf1N1B4_3979	0.24	-0.1
4,420,480	+		Pf1N1B4_3979	0.24	+0.3
4,420,481	-		Pf1N1B4_3979	0.24	+0.8
4,420,481	-		Pf1N1B4_3979	0.24	+1.8
4,420,481	-		Pf1N1B4_3979	0.24	+2.5
4,420,533	-		Pf1N1B4_3979	0.28	+1.1
4,420,963	+		Pf1N1B4_3979	0.62	+0.3
4,420,964	-		Pf1N1B4_3979	0.62	-0.1
4,420,964	-		Pf1N1B4_3979	0.62	+1.1
4,420,964	-		Pf1N1B4_3979	0.62	+0.6
4,421,322	-		Pf1N1B4_3979	0.89	-1.1
4,421,377	+				+0.4
4,421,378	-				+0.9
4,421,378	-				-0.2
4,421,380	+				-3.2
4,421,380	+				-0.4
4,421,380	+				+0.5
4,421,380	+				+0.2
4,421,381	-				+0.4
4,421,381	-				-0.1
4,421,381	-				-2.8
4,421,381	-				-0.2
4,421,381	-				-0.1
4,421,488	-				-0.8
4,421,499	+				-1.1
4,421,499	+				-1.4
4,421,499	+				+3.6
4,421,500	-				+0.6
4,421,500	-				+0.6
4,421,500	-				-0.4
4,421,522	-				-1.4
4,421,796	+		Pf1N1B4_3980	0.52	+0.3
4,421,796	+		Pf1N1B4_3980	0.52	+0.4
4,421,796	+		Pf1N1B4_3980	0.52	-0.2
4,421,797	-		Pf1N1B4_3980	0.52	+0.0
4,421,839	+		Pf1N1B4_3980	0.62	+0.3
4,421,840	-		Pf1N1B4_3980	0.62	+0.1