Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3883

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
4,310,287	+				+0.6
4,310,288	-		Pf1N1B4_3881	0.18	-0.1
4,310,288	-		Pf1N1B4_3881	0.18	-0.8
4,310,288	-		Pf1N1B4_3881	0.18	-0.8
4,310,288	-		Pf1N1B4_3881	0.18	+0.8
4,310,288	-		Pf1N1B4_3881	0.18	-2.1
4,310,288	-		Pf1N1B4_3881	0.18	-0.2
4,310,292	-		Pf1N1B4_3881	0.19	+0.8
4,310,292	-		Pf1N1B4_3881	0.19	+0.6
4,310,292	-		Pf1N1B4_3881	0.19	+0.9
4,310,292	-		Pf1N1B4_3881	0.19	+1.4
4,310,292	-		Pf1N1B4_3881	0.19	+0.0
4,310,292	-		Pf1N1B4_3881	0.19	-0.4
4,310,372	+		Pf1N1B4_3881	0.27	+0.3
4,310,373	-		Pf1N1B4_3881	0.27	-1.0
4,310,373	-		Pf1N1B4_3881	0.27	-0.3
4,310,373	-		Pf1N1B4_3881	0.27	+0.4
4,310,373	-		Pf1N1B4_3881	0.27	-0.2
4,310,373	-				+0.3
4,310,373	-		Pf1N1B4_3881	0.27	-1.5
4,310,373	-		Pf1N1B4_3881	0.27	+1.6
4,310,373	-		Pf1N1B4_3881	0.27	-1.4
4,310,373	-		Pf1N1B4_3881	0.27	+0.0
4,310,373	-		Pf1N1B4_3881	0.27	-0.5
4,310,373	-		Pf1N1B4_3881	0.27	-1.8
4,310,373	-		Pf1N1B4_3881	0.27	-0.5
4,310,373	-		Pf1N1B4_3881	0.27	+0.0
4,310,373	-		Pf1N1B4_3881	0.27	+0.6
4,310,373	-		Pf1N1B4_3881	0.27	-1.0
4,310,373	-				-0.4
4,310,455	+		Pf1N1B4_3881	0.36	+0.8
4,310,455	+		Pf1N1B4_3881	0.36	+0.6
4,310,455	+		Pf1N1B4_3881	0.36	+1.3
4,310,455	+		Pf1N1B4_3881	0.36	+0.0
4,310,455	+		Pf1N1B4_3881	0.36	+1.4
4,310,456	-		Pf1N1B4_3881	0.36	-0.5
4,310,456	-		Pf1N1B4_3881	0.36	-0.5
4,310,456	-		Pf1N1B4_3881	0.36	+0.6
4,310,456	-		Pf1N1B4_3881	0.36	-0.4
4,310,456	-		Pf1N1B4_3881	0.36	-1.0
4,310,456	-		Pf1N1B4_3881	0.36	-1.5
4,310,456	-		Pf1N1B4_3881	0.36	-0.5
4,310,456	-		Pf1N1B4_3881	0.36	-1.0
4,310,456	-		Pf1N1B4_3881	0.36	-0.6
4,310,456	-		Pf1N1B4_3881	0.36	+0.2
4,310,456	-		Pf1N1B4_3881	0.36	-1.0
4,310,456	-		Pf1N1B4_3881	0.36	+1.0
4,311,047	+				-1.1
4,311,048	-				+0.8
4,311,251	+				-1.5
4,311,252	-				+1.0
4,311,258	-				+1.2
4,311,325	-				-1.0
4,311,325	-				-1.0
4,311,397	-		Pf1N1B4_3883	0.19	+0.6
4,311,478	-		Pf1N1B4_3883	0.32	+2.3
4,311,519	+		Pf1N1B4_3883	0.39	-1.1
4,311,519	+		Pf1N1B4_3883	0.39	-0.2
4,311,520	-		Pf1N1B4_3883	0.39	+0.5
4,311,520	-		Pf1N1B4_3883	0.39	-0.8
4,311,520	-				+0.6
4,311,520	-		Pf1N1B4_3883	0.39	-1.4
4,311,639	+		Pf1N1B4_3883	0.58	-1.4
4,311,717	+		Pf1N1B4_3883	0.71	-0.4
4,311,717	+		Pf1N1B4_3883	0.71	+1.0
4,311,717	+		Pf1N1B4_3883	0.71	+0.6
4,311,717	+		Pf1N1B4_3883	0.71	-0.8
4,311,717	+		Pf1N1B4_3883	0.71	+0.9
4,311,717	+		Pf1N1B4_3883	0.71	+0.4
4,311,717	+		Pf1N1B4_3883	0.71	+0.9
4,311,718	-		Pf1N1B4_3883	0.71	+0.6
4,311,718	-		Pf1N1B4_3883	0.71	+0.8
4,311,750	+		Pf1N1B4_3883	0.77	+0.3
4,311,751	-		Pf1N1B4_3883	0.77	+0.6
4,311,970	+				-1.1
4,311,970	+				+3.2
4,311,971	-				+0.2
4,311,971	-				+1.4
4,311,971	-				+2.4
4,312,066	+		Pf1N1B4_3884	0.11	+0.6
4,312,066	+		Pf1N1B4_3884	0.11	-1.2
4,312,067	-		Pf1N1B4_3884	0.12	+1.6
4,312,067	-		Pf1N1B4_3884	0.12	-0.7
4,312,067	-		Pf1N1B4_3884	0.12	-0.4
4,312,067	-		Pf1N1B4_3884	0.12	+0.5
4,312,067	-		Pf1N1B4_3884	0.12	-0.1
4,312,144	+		Pf1N1B4_3884	0.17	+1.4
4,312,144	+				-1.5
4,312,145	-		Pf1N1B4_3884	0.17	-0.8
4,312,145	-				+1.2
4,312,145	-		Pf1N1B4_3884	0.17	-0.7
4,312,316	-		Pf1N1B4_3884	0.29	+0.3
4,312,316	-		Pf1N1B4_3884	0.29	+0.0
4,312,379	-		Pf1N1B4_3884	0.33	+0.9
4,312,430	+		Pf1N1B4_3884	0.37	+0.7
4,312,430	+		Pf1N1B4_3884	0.37	+1.1
4,312,431	-		Pf1N1B4_3884	0.37	+1.6
4,312,431	-		Pf1N1B4_3884	0.37	-0.2
4,312,431	-		Pf1N1B4_3884	0.37	+0.6
4,312,546	+		Pf1N1B4_3884	0.45	+0.7
4,312,547	-		Pf1N1B4_3884	0.45	+0.3
4,312,547	-		Pf1N1B4_3884	0.45	+1.5
4,312,577	-		Pf1N1B4_3884	0.47	-0.5
4,312,577	-		Pf1N1B4_3884	0.47	+0.6
4,312,577	-		Pf1N1B4_3884	0.47	+0.5
4,312,577	-		Pf1N1B4_3884	0.47	+1.2
4,312,577	-		Pf1N1B4_3884	0.47	+0.6
4,312,577	-		Pf1N1B4_3884	0.47	+0.9
4,312,577	-		Pf1N1B4_3884	0.47	-1.1
4,312,624	+		Pf1N1B4_3884	0.51	+0.5
4,312,624	+		Pf1N1B4_3884	0.51	+0.8
4,312,624	+		Pf1N1B4_3884	0.51	+1.0
4,312,624	+		Pf1N1B4_3884	0.51	+0.7
4,312,624	+		Pf1N1B4_3884	0.51	+0.4
4,312,657	+		Pf1N1B4_3884	0.53	+0.6
4,312,657	+		Pf1N1B4_3884	0.53	-2.1
4,312,657	+		Pf1N1B4_3884	0.53	+0.6
4,312,657	+		Pf1N1B4_3884	0.53	+0.6
4,312,658	-		Pf1N1B4_3884	0.53	-1.2
4,312,658	-		Pf1N1B4_3884	0.53	+0.7
4,312,658	-		Pf1N1B4_3884	0.53	+1.7
4,312,658	-		Pf1N1B4_3884	0.53	-0.5
4,312,660	+		Pf1N1B4_3884	0.53	+0.3
4,312,660	+		Pf1N1B4_3884	0.53	+1.9
4,312,660	+		Pf1N1B4_3884	0.53	-0.5
4,312,660	+		Pf1N1B4_3884	0.53	+0.7
4,312,661	-		Pf1N1B4_3884	0.53	+1.3
4,312,661	-		Pf1N1B4_3884	0.53	+2.6
4,312,661	-		Pf1N1B4_3884	0.53	-2.3
4,312,661	-		Pf1N1B4_3884	0.53	+0.5
4,312,661	-		Pf1N1B4_3884	0.53	-0.4
4,312,750	+		Pf1N1B4_3884	0.59	+2.4
4,312,760	-				+1.3
4,312,855	+		Pf1N1B4_3884	0.67	+1.4
4,312,855	+		Pf1N1B4_3884	0.67	+0.6
4,312,855	+		Pf1N1B4_3884	0.67	+0.0
4,312,855	+		Pf1N1B4_3884	0.67	+1.1
4,312,855	+		Pf1N1B4_3884	0.67	+2.6
4,312,855	+		Pf1N1B4_3884	0.67	+0.0
4,312,855	+		Pf1N1B4_3884	0.67	+2.8
4,312,856	-		Pf1N1B4_3884	0.67	+0.8
4,312,856	-		Pf1N1B4_3884	0.67	+0.4
4,312,856	-		Pf1N1B4_3884	0.67	-0.1
4,312,856	-		Pf1N1B4_3884	0.67	+0.0
4,312,856	-		Pf1N1B4_3884	0.67	-1.2
4,312,856	-		Pf1N1B4_3884	0.67	-0.2
4,312,856	-		Pf1N1B4_3884	0.67	-0.4
4,312,856	-		Pf1N1B4_3884	0.67	-0.4
4,312,856	-				+1.2
4,312,856	-		Pf1N1B4_3884	0.67	-0.5