Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3821

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
4,231,743	-		Pf1N1B4_3820	0.36	-1.8
4,231,955	+		Pf1N1B4_3820	0.55	-2.1
4,231,956	-		Pf1N1B4_3820	0.55	-2.1
4,231,956	-		Pf1N1B4_3820	0.55	-2.2
4,231,956	-		Pf1N1B4_3820	0.55	-0.4
4,232,126	+		Pf1N1B4_3820	0.70	-2.3
4,232,126	+		Pf1N1B4_3820	0.70	-1.9
4,232,126	+		Pf1N1B4_3820	0.70	-1.9
4,232,126	+		Pf1N1B4_3820	0.70	-1.7
4,232,126	+		Pf1N1B4_3820	0.70	-0.4
4,232,126	+		Pf1N1B4_3820	0.70	-1.5
4,232,126	+				-0.4
4,232,126	+		Pf1N1B4_3820	0.70	-2.2
4,232,126	+		Pf1N1B4_3820	0.70	-2.6
4,232,127	-		Pf1N1B4_3820	0.70	-1.7
4,232,127	-		Pf1N1B4_3820	0.70	-2.6
4,232,127	-		Pf1N1B4_3820	0.70	+0.1
4,232,127	-		Pf1N1B4_3820	0.70	-0.2
4,232,127	-				-1.2
4,232,127	-		Pf1N1B4_3820	0.70	-0.6
4,232,128	+		Pf1N1B4_3820	0.70	+0.6
4,232,129	-		Pf1N1B4_3820	0.70	+1.0
4,232,276	+		Pf1N1B4_3820	0.83	+0.1
4,232,276	+		Pf1N1B4_3820	0.83	-3.0
4,232,276	+		Pf1N1B4_3820	0.83	-1.4
4,232,276	+		Pf1N1B4_3820	0.83	-0.1
4,232,276	+		Pf1N1B4_3820	0.83	-1.4
4,232,276	+		Pf1N1B4_3820	0.83	-5.0
4,232,276	+		Pf1N1B4_3820	0.83	-0.5
4,232,276	+		Pf1N1B4_3820	0.83	-0.7
4,232,277	-		Pf1N1B4_3820	0.83	-1.7
4,232,277	-		Pf1N1B4_3820	0.83	-1.7
4,232,277	-		Pf1N1B4_3820	0.83	-2.1
4,232,292	-		Pf1N1B4_3820	0.85	-1.8
4,232,417	+				-2.3
4,232,417	+				-1.6
4,232,417	+				-3.6
4,232,418	-				-2.1
4,232,418	-				-1.3
4,232,418	-				-1.2
4,232,619	+				+0.2
4,232,620	-				+0.0
4,232,620	-				+0.0
4,232,646	-				+1.2
4,232,902	+				+0.3
4,232,903	-				+0.1
4,233,660	+				+2.2
4,233,709	-		Pf1N1B4_3821	0.40	+0.6
4,234,155	+		Pf1N1B4_3821	0.57	-0.9
4,234,297	+				+1.0
4,234,297	+		Pf1N1B4_3821	0.63	+0.0
4,234,298	-		Pf1N1B4_3821	0.63	+1.1
4,234,410	+				+1.6
4,234,410	+		Pf1N1B4_3821	0.67	-0.3
4,234,410	+		Pf1N1B4_3821	0.67	+2.2
4,234,411	-		Pf1N1B4_3821	0.67	-0.4
4,234,464	+		Pf1N1B4_3821	0.69	-0.7
4,234,488	+		Pf1N1B4_3821	0.70	+3.6
4,234,488	+		Pf1N1B4_3821	0.70	+0.2
4,234,488	+		Pf1N1B4_3821	0.70	+2.4
4,234,488	+		Pf1N1B4_3821	0.70	+0.9
4,234,488	+		Pf1N1B4_3821	0.70	-0.2
4,234,488	+		Pf1N1B4_3821	0.70	-0.1
4,234,488	+				+1.6
4,234,489	-		Pf1N1B4_3821	0.70	-1.0
4,234,489	-		Pf1N1B4_3821	0.70	+0.3
4,234,489	-		Pf1N1B4_3821	0.70	+1.1
4,234,680	+		Pf1N1B4_3821	0.77	+0.0
4,234,680	+		Pf1N1B4_3821	0.77	-0.2
4,234,681	-		Pf1N1B4_3821	0.77	-0.4
4,234,845	+		Pf1N1B4_3821	0.84	+0.6
4,234,846	-		Pf1N1B4_3821	0.84	+0.0
4,234,846	-		Pf1N1B4_3821	0.84	-1.9
4,235,073	+				-1.0
4,235,196	+				+0.0
4,235,313	+				+0.6
4,235,313	+				-1.4
4,235,313	+				-0.7
4,235,313	+				-0.7
4,235,313	+				-0.2
4,235,313	+				+1.0
4,235,313	+				+1.2
4,235,313	+				-0.2
4,235,313	+				-2.0
4,235,314	-				+0.0
4,235,314	-				-0.1
4,235,352	+				-2.0
4,235,352	+				+0.6
4,235,352	+				-1.2
4,235,352	+				+0.3
4,235,352	+				+0.9
4,235,353	-				-0.4
4,235,353	-				+1.6
4,235,761	+		Pf1N1B4_3822	0.37	-2.6
4,236,177	+		Pf1N1B4_3822	0.72	-1.0