Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3819

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
4,229,311	+				-1.0
4,229,311	+				+0.0
4,229,311	+				-0.9
4,229,311	+				-0.3
4,229,317	+				-1.2
4,229,318	-				-0.8
4,229,371	+				-0.7
4,229,371	+				-2.2
4,229,371	+				+1.0
4,229,371	+				-0.3
4,229,371	+				+0.7
4,229,371	+				+0.1
4,229,385	+				+0.4
4,229,410	+				-0.4
4,229,412	+				+1.2
4,229,412	+				-1.9
4,229,412	+				-0.7
4,229,499	+				-1.4
4,229,542	+				+0.0
4,229,691	-		Pf1N1B4_3818	0.20	+1.3
4,229,816	+		Pf1N1B4_3818	0.38	-0.1
4,229,954	+				-0.4
4,229,954	+		Pf1N1B4_3818	0.57	-0.4
4,230,062	+		Pf1N1B4_3818	0.72	+0.9
4,230,062	+		Pf1N1B4_3818	0.72	-0.5
4,230,062	+		Pf1N1B4_3818	0.72	-1.0
4,230,063	-		Pf1N1B4_3818	0.72	-0.6
4,230,218	+				+1.0
4,230,218	+				+0.1
4,230,394	+		Pf1N1B4_3819	0.15	-1.7
4,230,394	+		Pf1N1B4_3819	0.15	+1.3
4,230,395	-		Pf1N1B4_3819	0.15	-1.6
4,230,648	+		Pf1N1B4_3819	0.43	+0.4
4,230,651	+				+0.0
4,230,652	-		Pf1N1B4_3819	0.44	+0.0
4,230,759	-		Pf1N1B4_3819	0.56	+0.0
4,230,853	+				+2.6
4,230,853	+		Pf1N1B4_3819	0.66	-0.6
4,230,853	+		Pf1N1B4_3819	0.66	-1.2
4,230,853	+				-1.4
4,230,853	+		Pf1N1B4_3819	0.66	+1.6
4,230,854	-		Pf1N1B4_3819	0.66	-1.1
4,230,854	-		Pf1N1B4_3819	0.66	-1.0
4,230,854	-		Pf1N1B4_3819	0.66	-1.0
4,230,854	-		Pf1N1B4_3819	0.66	-1.9
4,230,854	-		Pf1N1B4_3819	0.66	-2.2
4,230,925	+		Pf1N1B4_3819	0.74	+0.6
4,230,925	+		Pf1N1B4_3819	0.74	-0.3
4,230,926	-		Pf1N1B4_3819	0.75	-0.3
4,230,926	-		Pf1N1B4_3819	0.75	-0.9
4,230,926	-				-1.2
4,231,019	-		Pf1N1B4_3819	0.85	-0.7
4,231,019	-		Pf1N1B4_3819	0.85	+0.0
4,231,151	-				+1.0
4,231,201	-				-2.2
4,231,201	-				-0.7
4,231,229	+				+0.0
4,231,229	+				-0.3
4,231,229	+				+0.9
4,231,353	+				-3.8
4,231,353	+				-1.6
4,231,436	+				+0.3
4,231,436	+				+0.0
4,231,437	-				+1.6
4,231,541	+		Pf1N1B4_3820	0.18	-2.2
4,231,542	-		Pf1N1B4_3820	0.18	-1.3
4,231,743	-		Pf1N1B4_3820	0.36	-1.8
4,231,955	+		Pf1N1B4_3820	0.55	-2.1
4,231,956	-		Pf1N1B4_3820	0.55	-2.1
4,231,956	-		Pf1N1B4_3820	0.55	-2.2
4,231,956	-		Pf1N1B4_3820	0.55	-0.4
4,232,126	+		Pf1N1B4_3820	0.70	-2.3
4,232,126	+		Pf1N1B4_3820	0.70	-1.9
4,232,126	+		Pf1N1B4_3820	0.70	-1.9
4,232,126	+		Pf1N1B4_3820	0.70	-1.7
4,232,126	+		Pf1N1B4_3820	0.70	-0.4
4,232,126	+		Pf1N1B4_3820	0.70	-1.5
4,232,126	+				-0.4
4,232,126	+		Pf1N1B4_3820	0.70	-2.2
4,232,126	+		Pf1N1B4_3820	0.70	-2.6
4,232,127	-		Pf1N1B4_3820	0.70	-1.7
4,232,127	-		Pf1N1B4_3820	0.70	-2.6
4,232,127	-		Pf1N1B4_3820	0.70	+0.1
4,232,127	-		Pf1N1B4_3820	0.70	-0.2
4,232,127	-				-1.2
4,232,127	-		Pf1N1B4_3820	0.70	-0.6
4,232,128	+		Pf1N1B4_3820	0.70	+0.6
4,232,129	-		Pf1N1B4_3820	0.70	+1.0