Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_359

Experiment: Nitrate reduction, replicate C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_358 and Pf1N1B4_359 are separated by 374 nucleotidesPf1N1B4_359 and Pf1N1B4_360 are separated by 140 nucleotidesPf1N1B4_360 and Pf1N1B4_361 are separated by 44 nucleotides Pf1N1B4_358 - Oxidoreductase, short chain dehydrogenase/reductase family, at 424,920 to 425,660 _358 Pf1N1B4_359 - GGDEF domain protein, at 426,035 to 426,961 _359 Pf1N1B4_360 - Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C, at 427,102 to 427,896 _360 Pf1N1B4_361 - Sensory box/GGDEF family protein, at 427,941 to 430,400 _361 Position (kb) 426 427Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 425.079 kb on + strand, within Pf1N1B4_358at 425.079 kb on + strand, within Pf1N1B4_358at 425.079 kb on + strand, within Pf1N1B4_358at 425.079 kb on + strand, within Pf1N1B4_358at 425.080 kb on - strand, within Pf1N1B4_358at 425.080 kb on - strand, within Pf1N1B4_358at 425.080 kb on - strand, within Pf1N1B4_358at 425.080 kb on - strand, within Pf1N1B4_358at 425.157 kb on + strand, within Pf1N1B4_358at 425.157 kb on + strand, within Pf1N1B4_358at 425.157 kb on + strand, within Pf1N1B4_358at 425.157 kb on + strand, within Pf1N1B4_358at 425.157 kb on + strand, within Pf1N1B4_358at 425.157 kb on + strandat 425.157 kb on + strand, within Pf1N1B4_358at 425.158 kb on - strand, within Pf1N1B4_358at 425.158 kb on - strand, within Pf1N1B4_358at 425.158 kb on - strand, within Pf1N1B4_358at 425.158 kb on - strand, within Pf1N1B4_358at 425.158 kb on - strand, within Pf1N1B4_358at 425.470 kb on + strand, within Pf1N1B4_358at 425.470 kb on + strand, within Pf1N1B4_358at 425.470 kb on + strand, within Pf1N1B4_358at 425.470 kb on + strand, within Pf1N1B4_358at 425.470 kb on + strand, within Pf1N1B4_358at 425.470 kb on + strand, within Pf1N1B4_358at 425.471 kb on - strand, within Pf1N1B4_358at 425.471 kb on - strand, within Pf1N1B4_358at 425.471 kb on - strand, within Pf1N1B4_358at 425.471 kb on - strand, within Pf1N1B4_358at 425.471 kb on - strand, within Pf1N1B4_358at 425.471 kb on - strand, within Pf1N1B4_358at 425.471 kb on - strand, within Pf1N1B4_358at 425.544 kb on + strand, within Pf1N1B4_358at 425.598 kb on + strandat 425.598 kb on + strandat 425.598 kb on + strandat 425.599 kb on - strandat 425.599 kb on - strandat 425.604 kb on + strandat 425.604 kb on + strandat 425.604 kb on + strandat 425.604 kb on + strandat 425.604 kb on + strandat 425.604 kb on + strandat 425.605 kb on - strandat 425.605 kb on - strandat 425.658 kb on + strandat 425.721 kb on - strandat 425.745 kb on - strandat 425.745 kb on - strandat 425.745 kb on - strandat 425.905 kb on + strandat 425.905 kb on + strandat 425.906 kb on - strandat 425.925 kb on + strandat 425.925 kb on + strandat 426.001 kb on + strandat 426.012 kb on + strandat 426.013 kb on - strandat 426.211 kb on - strand, within Pf1N1B4_359at 426.317 kb on + strand, within Pf1N1B4_359at 426.620 kb on + strand, within Pf1N1B4_359at 426.620 kb on + strand, within Pf1N1B4_359at 426.620 kb on + strand, within Pf1N1B4_359at 426.621 kb on - strand, within Pf1N1B4_359at 426.807 kb on - strand, within Pf1N1B4_359at 426.807 kb on - strand, within Pf1N1B4_359at 426.914 kb on + strandat 426.914 kb on + strandat 426.914 kb on + strandat 426.914 kb on + strandat 426.914 kb on + strandat 426.914 kb on + strandat 426.914 kb on + strandat 426.914 kb on + strandat 426.915 kb on - strandat 426.915 kb on - strandat 426.978 kb on + strandat 426.978 kb on + strandat 426.978 kb on + strandat 426.978 kb on + strandat 426.978 kb on + strandat 426.979 kb on - strandat 426.980 kb on + strandat 426.981 kb on - strandat 427.019 kb on + strandat 427.019 kb on + strandat 427.187 kb on + strand, within Pf1N1B4_360at 427.187 kb on + strand, within Pf1N1B4_360at 427.187 kb on + strand, within Pf1N1B4_360at 427.187 kb on + strand, within Pf1N1B4_360at 427.187 kb on + strand, within Pf1N1B4_360at 427.187 kb on + strand, within Pf1N1B4_360at 427.187 kb on + strand, within Pf1N1B4_360at 427.187 kb on + strand, within Pf1N1B4_360at 427.187 kb on + strand, within Pf1N1B4_360at 427.187 kb on + strand, within Pf1N1B4_360at 427.188 kb on - strand, within Pf1N1B4_360at 427.188 kb on - strand, within Pf1N1B4_360at 427.188 kb on - strand, within Pf1N1B4_360at 427.188 kb on - strand, within Pf1N1B4_360at 427.188 kb on - strand, within Pf1N1B4_360at 427.188 kb on - strand, within Pf1N1B4_360at 427.188 kb on - strandat 427.188 kb on - strand, within Pf1N1B4_360at 427.188 kb on - strand, within Pf1N1B4_360at 427.188 kb on - strand, within Pf1N1B4_360at 427.188 kb on - strand, within Pf1N1B4_360at 427.188 kb on - strand, within Pf1N1B4_360at 427.188 kb on - strand, within Pf1N1B4_360at 427.188 kb on - strand, within Pf1N1B4_360at 427.188 kb on - strand, within Pf1N1B4_360at 427.188 kb on - strand, within Pf1N1B4_360at 427.188 kb on - strand, within Pf1N1B4_360at 427.188 kb on - strand, within Pf1N1B4_360at 427.188 kb on - strand, within Pf1N1B4_360at 427.193 kb on + strand, within Pf1N1B4_360at 427.193 kb on + strand, within Pf1N1B4_360at 427.193 kb on + strand, within Pf1N1B4_360at 427.194 kb on - strand, within Pf1N1B4_360at 427.194 kb on - strand, within Pf1N1B4_360at 427.194 kb on - strand, within Pf1N1B4_360at 427.194 kb on - strand, within Pf1N1B4_360at 427.194 kb on - strand, within Pf1N1B4_360at 427.194 kb on - strand, within Pf1N1B4_360at 427.194 kb on - strand, within Pf1N1B4_360at 427.373 kb on + strandat 427.373 kb on + strand, within Pf1N1B4_360at 427.374 kb on - strand, within Pf1N1B4_360at 427.374 kb on - strand, within Pf1N1B4_360at 427.430 kb on + strand, within Pf1N1B4_360at 427.430 kb on + strand, within Pf1N1B4_360at 427.431 kb on - strand, within Pf1N1B4_360at 427.431 kb on - strand, within Pf1N1B4_360at 427.431 kb on - strand, within Pf1N1B4_360at 427.431 kb on - strand, within Pf1N1B4_360at 427.431 kb on - strand, within Pf1N1B4_360at 427.431 kb on - strand, within Pf1N1B4_360at 427.431 kb on - strand, within Pf1N1B4_360at 427.431 kb on - strand, within Pf1N1B4_360at 427.683 kb on + strand, within Pf1N1B4_360at 427.684 kb on - strand, within Pf1N1B4_360at 427.684 kb on - strand, within Pf1N1B4_360at 427.684 kb on - strand, within Pf1N1B4_360at 427.684 kb on - strand, within Pf1N1B4_360at 427.684 kb on - strand, within Pf1N1B4_360at 427.684 kb on - strand, within Pf1N1B4_360at 427.685 kb on + strand, within Pf1N1B4_360at 427.685 kb on + strand, within Pf1N1B4_360at 427.685 kb on + strand, within Pf1N1B4_360at 427.685 kb on + strand, within Pf1N1B4_360at 427.685 kb on + strand, within Pf1N1B4_360at 427.685 kb on + strand, within Pf1N1B4_360at 427.685 kb on + strand, within Pf1N1B4_360at 427.685 kb on + strandat 427.685 kb on + strand, within Pf1N1B4_360at 427.685 kb on + strand, within Pf1N1B4_360at 427.685 kb on + strand, within Pf1N1B4_360at 427.685 kb on + strand, within Pf1N1B4_360at 427.685 kb on + strand, within Pf1N1B4_360at 427.685 kb on + strand, within Pf1N1B4_360at 427.685 kb on + strand, within Pf1N1B4_360at 427.685 kb on + strand, within Pf1N1B4_360at 427.686 kb on - strand, within Pf1N1B4_360at 427.686 kb on - strand, within Pf1N1B4_360at 427.686 kb on - strand, within Pf1N1B4_360at 427.686 kb on - strand, within Pf1N1B4_360at 427.686 kb on - strand, within Pf1N1B4_360at 427.686 kb on - strand, within Pf1N1B4_360at 427.686 kb on - strand, within Pf1N1B4_360at 427.686 kb on - strand, within Pf1N1B4_360at 427.686 kb on - strand, within Pf1N1B4_360at 427.686 kb on - strand, within Pf1N1B4_360at 427.686 kb on - strand, within Pf1N1B4_360at 427.686 kb on - strand, within Pf1N1B4_360at 427.686 kb on - strand, within Pf1N1B4_360at 427.686 kb on - strand, within Pf1N1B4_360at 427.686 kb on - strand, within Pf1N1B4_360at 427.686 kb on - strand, within Pf1N1B4_360at 427.686 kb on - strand, within Pf1N1B4_360at 427.686 kb on - strand, within Pf1N1B4_360at 427.686 kb on - strand, within Pf1N1B4_360at 427.686 kb on - strand, within Pf1N1B4_360at 427.687 kb on + strand, within Pf1N1B4_360at 427.687 kb on + strand, within Pf1N1B4_360at 427.688 kb on - strand, within Pf1N1B4_360at 427.688 kb on - strand, within Pf1N1B4_360at 427.688 kb on - strand, within Pf1N1B4_360at 427.688 kb on - strand, within Pf1N1B4_360at 427.688 kb on - strand, within Pf1N1B4_360at 427.688 kb on - strand, within Pf1N1B4_360at 427.688 kb on - strand, within Pf1N1B4_360at 427.688 kb on - strand, within Pf1N1B4_360at 427.688 kb on - strand, within Pf1N1B4_360at 427.688 kb on - strand, within Pf1N1B4_360at 427.723 kb on - strand, within Pf1N1B4_360at 427.723 kb on - strand, within Pf1N1B4_360at 427.723 kb on - strand, within Pf1N1B4_360at 427.727 kb on + strand, within Pf1N1B4_360at 427.727 kb on + strand, within Pf1N1B4_360at 427.728 kb on - strand, within Pf1N1B4_360at 427.728 kb on - strand, within Pf1N1B4_360at 427.758 kb on + strand, within Pf1N1B4_360at 427.758 kb on + strand, within Pf1N1B4_360at 427.759 kb on - strand, within Pf1N1B4_360at 427.759 kb on - strand, within Pf1N1B4_360at 427.775 kb on + strand, within Pf1N1B4_360at 427.776 kb on - strand, within Pf1N1B4_360at 427.848 kb on - strandat 427.888 kb on - strandat 427.924 kb on - strandat 427.924 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate C
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425,079 + Pf1N1B4_358 0.21 +0.3
425,079 + Pf1N1B4_358 0.21 -1.8
425,079 + Pf1N1B4_358 0.21 -0.6
425,079 + Pf1N1B4_358 0.21 -1.5
425,080 - Pf1N1B4_358 0.22 +0.6
425,080 - Pf1N1B4_358 0.22 -1.6
425,080 - Pf1N1B4_358 0.22 +1.6
425,080 - Pf1N1B4_358 0.22 +0.5
425,157 + Pf1N1B4_358 0.32 +0.6
425,157 + Pf1N1B4_358 0.32 -0.0
425,157 + Pf1N1B4_358 0.32 -0.0
425,157 + Pf1N1B4_358 0.32 -0.8
425,157 + Pf1N1B4_358 0.32 +0.1
425,157 + -0.6
425,157 + Pf1N1B4_358 0.32 -0.4
425,158 - Pf1N1B4_358 0.32 -0.3
425,158 - Pf1N1B4_358 0.32 -0.0
425,158 - Pf1N1B4_358 0.32 -0.8
425,158 - Pf1N1B4_358 0.32 +0.6
425,158 - Pf1N1B4_358 0.32 -1.4
425,470 + Pf1N1B4_358 0.74 +0.6
425,470 + Pf1N1B4_358 0.74 -1.6
425,470 + Pf1N1B4_358 0.74 +1.3
425,470 + Pf1N1B4_358 0.74 -0.0
425,470 + Pf1N1B4_358 0.74 -1.0
425,470 + Pf1N1B4_358 0.74 -2.0
425,471 - Pf1N1B4_358 0.74 -0.0
425,471 - Pf1N1B4_358 0.74 -2.0
425,471 - Pf1N1B4_358 0.74 -0.0
425,471 - Pf1N1B4_358 0.74 -0.7
425,471 - Pf1N1B4_358 0.74 -1.4
425,471 - Pf1N1B4_358 0.74 -1.8
425,471 - Pf1N1B4_358 0.74 -0.8
425,544 + Pf1N1B4_358 0.84 +1.1
425,598 + -0.2
425,598 + -0.2
425,598 + -1.6
425,599 - -0.4
425,599 - -1.8
425,604 + +0.6
425,604 + -0.4
425,604 + -1.6
425,604 + -0.0
425,604 + +0.6
425,604 + -0.0
425,605 - -1.3
425,605 - -1.9
425,658 + +0.6
425,721 - -0.9
425,745 - +0.5
425,745 - -1.3
425,745 - +2.3
425,905 + +1.6
425,905 + +0.2
425,906 - +1.6
425,925 + +1.7
425,925 + -1.4
426,001 + +1.0
426,012 + +0.7
426,013 - +0.6
426,211 - Pf1N1B4_359 0.19 -0.0
426,317 + Pf1N1B4_359 0.30 +0.1
426,620 + Pf1N1B4_359 0.63 -1.5
426,620 + Pf1N1B4_359 0.63 +1.1
426,620 + Pf1N1B4_359 0.63 +0.9
426,621 - Pf1N1B4_359 0.63 +1.1
426,807 - Pf1N1B4_359 0.83 +0.9
426,807 - Pf1N1B4_359 0.83 +1.3
426,914 + -0.3
426,914 + -0.0
426,914 + -1.0
426,914 + -0.9
426,914 + +0.3
426,914 + -0.1
426,914 + -0.5
426,914 + -0.0
426,915 - +0.6
426,915 - -2.0
426,978 + -0.4
426,978 + +0.6
426,978 + -1.4
426,978 + -0.8
426,978 + -1.3
426,979 - +0.4
426,980 + -0.7
426,981 - -0.6
427,019 + -0.0
427,019 + -0.3
427,187 + Pf1N1B4_360 0.11 +0.9
427,187 + Pf1N1B4_360 0.11 -2.3
427,187 + Pf1N1B4_360 0.11 +0.8
427,187 + Pf1N1B4_360 0.11 -0.1
427,187 + Pf1N1B4_360 0.11 -0.3
427,187 + Pf1N1B4_360 0.11 +0.1
427,187 + Pf1N1B4_360 0.11 +0.0
427,187 + Pf1N1B4_360 0.11 -1.6
427,187 + Pf1N1B4_360 0.11 +1.2
427,187 + Pf1N1B4_360 0.11 -1.6
427,188 - Pf1N1B4_360 0.11 +0.1
427,188 - Pf1N1B4_360 0.11 +1.0
427,188 - Pf1N1B4_360 0.11 -0.3
427,188 - Pf1N1B4_360 0.11 +1.0
427,188 - Pf1N1B4_360 0.11 -2.8
427,188 - Pf1N1B4_360 0.11 +1.3
427,188 - -0.0
427,188 - Pf1N1B4_360 0.11 +2.0
427,188 - Pf1N1B4_360 0.11 +2.4
427,188 - Pf1N1B4_360 0.11 -0.3
427,188 - Pf1N1B4_360 0.11 -2.5
427,188 - Pf1N1B4_360 0.11 -2.1
427,188 - Pf1N1B4_360 0.11 -0.9
427,188 - Pf1N1B4_360 0.11 -1.6
427,188 - Pf1N1B4_360 0.11 -0.0
427,188 - Pf1N1B4_360 0.11 +0.0
427,188 - Pf1N1B4_360 0.11 -1.8
427,188 - Pf1N1B4_360 0.11 +0.4
427,188 - Pf1N1B4_360 0.11 -0.0
427,193 + Pf1N1B4_360 0.11 +0.8
427,193 + Pf1N1B4_360 0.11 +0.6
427,193 + Pf1N1B4_360 0.11 +0.6
427,194 - Pf1N1B4_360 0.12 +1.4
427,194 - Pf1N1B4_360 0.12 +3.0
427,194 - Pf1N1B4_360 0.12 -0.8
427,194 - Pf1N1B4_360 0.12 +0.3
427,194 - Pf1N1B4_360 0.12 -0.4
427,194 - Pf1N1B4_360 0.12 -0.0
427,194 - Pf1N1B4_360 0.12 +0.6
427,373 + -0.3
427,373 + Pf1N1B4_360 0.34 -1.3
427,374 - Pf1N1B4_360 0.34 +1.6
427,374 - Pf1N1B4_360 0.34 +1.6
427,430 + Pf1N1B4_360 0.41 -1.3
427,430 + Pf1N1B4_360 0.41 -1.9
427,431 - Pf1N1B4_360 0.41 -0.2
427,431 - Pf1N1B4_360 0.41 -2.0
427,431 - Pf1N1B4_360 0.41 -1.6
427,431 - Pf1N1B4_360 0.41 +0.4
427,431 - Pf1N1B4_360 0.41 -1.3
427,431 - Pf1N1B4_360 0.41 -0.0
427,431 - Pf1N1B4_360 0.41 -1.0
427,431 - Pf1N1B4_360 0.41 +1.3
427,683 + Pf1N1B4_360 0.73 -0.8
427,684 - Pf1N1B4_360 0.73 -0.0
427,684 - Pf1N1B4_360 0.73 -0.2
427,684 - Pf1N1B4_360 0.73 +0.6
427,684 - Pf1N1B4_360 0.73 -0.4
427,684 - Pf1N1B4_360 0.73 -1.4
427,684 - Pf1N1B4_360 0.73 +1.0
427,685 + Pf1N1B4_360 0.73 -1.8
427,685 + Pf1N1B4_360 0.73 +2.8
427,685 + Pf1N1B4_360 0.73 -1.0
427,685 + Pf1N1B4_360 0.73 +0.1
427,685 + Pf1N1B4_360 0.73 -0.8
427,685 + Pf1N1B4_360 0.73 -0.6
427,685 + Pf1N1B4_360 0.73 -1.0
427,685 + -1.6
427,685 + Pf1N1B4_360 0.73 +0.3
427,685 + Pf1N1B4_360 0.73 +0.2
427,685 + Pf1N1B4_360 0.73 +1.0
427,685 + Pf1N1B4_360 0.73 +1.6
427,685 + Pf1N1B4_360 0.73 -0.7
427,685 + Pf1N1B4_360 0.73 +0.3
427,685 + Pf1N1B4_360 0.73 -0.9
427,685 + Pf1N1B4_360 0.73 -1.4
427,686 - Pf1N1B4_360 0.73 +2.6
427,686 - Pf1N1B4_360 0.73 +1.0
427,686 - Pf1N1B4_360 0.73 -2.8
427,686 - Pf1N1B4_360 0.73 -1.0
427,686 - Pf1N1B4_360 0.73 +0.8
427,686 - Pf1N1B4_360 0.73 +0.4
427,686 - Pf1N1B4_360 0.73 +0.8
427,686 - Pf1N1B4_360 0.73 -0.8
427,686 - Pf1N1B4_360 0.73 -0.7
427,686 - Pf1N1B4_360 0.73 -0.3
427,686 - Pf1N1B4_360 0.73 +1.0
427,686 - Pf1N1B4_360 0.73 +1.7
427,686 - Pf1N1B4_360 0.73 -0.4
427,686 - Pf1N1B4_360 0.73 +2.1
427,686 - Pf1N1B4_360 0.73 -2.3
427,686 - Pf1N1B4_360 0.73 -0.0
427,686 - Pf1N1B4_360 0.73 +0.1
427,686 - Pf1N1B4_360 0.73 +0.7
427,686 - Pf1N1B4_360 0.73 -1.0
427,686 - Pf1N1B4_360 0.73 -0.7
427,687 + Pf1N1B4_360 0.74 -0.4
427,687 + Pf1N1B4_360 0.74 -0.6
427,688 - Pf1N1B4_360 0.74 -2.4
427,688 - Pf1N1B4_360 0.74 +0.8
427,688 - Pf1N1B4_360 0.74 -0.3
427,688 - Pf1N1B4_360 0.74 -0.9
427,688 - Pf1N1B4_360 0.74 -1.6
427,688 - Pf1N1B4_360 0.74 +0.1
427,688 - Pf1N1B4_360 0.74 -0.0
427,688 - Pf1N1B4_360 0.74 -2.0
427,688 - Pf1N1B4_360 0.74 -0.8
427,688 - Pf1N1B4_360 0.74 -0.1
427,723 - Pf1N1B4_360 0.78 +0.6
427,723 - Pf1N1B4_360 0.78 -0.5
427,723 - Pf1N1B4_360 0.78 +0.7
427,727 + Pf1N1B4_360 0.79 +0.6
427,727 + Pf1N1B4_360 0.79 -0.0
427,728 - Pf1N1B4_360 0.79 -0.0
427,728 - Pf1N1B4_360 0.79 -0.8
427,758 + Pf1N1B4_360 0.83 +0.1
427,758 + Pf1N1B4_360 0.83 -0.0
427,759 - Pf1N1B4_360 0.83 -1.1
427,759 - Pf1N1B4_360 0.83 -0.9
427,775 + Pf1N1B4_360 0.85 -0.3
427,776 - Pf1N1B4_360 0.85 -1.6
427,848 - +0.2
427,888 - +0.6
427,924 - -1.6
427,924 - +1.3

Or see this region's nucleotide sequence