Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3288

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
3,673,361	+		Pf1N1B4_3287	0.45	-1.6
3,673,361	+		Pf1N1B4_3287	0.45	+1.5
3,673,361	+		Pf1N1B4_3287	0.45	+0.1
3,673,362	-		Pf1N1B4_3287	0.45	+0.5
3,673,382	+				-0.3
3,673,392	+		Pf1N1B4_3287	0.47	-0.8
3,673,392	+		Pf1N1B4_3287	0.47	+1.4
3,673,400	+				-0.1
3,673,400	+		Pf1N1B4_3287	0.48	+2.0
3,673,586	-		Pf1N1B4_3287	0.60	+1.0
3,673,670	+		Pf1N1B4_3287	0.66	-1.5
3,673,670	+		Pf1N1B4_3287	0.66	-0.3
3,673,741	+		Pf1N1B4_3287	0.71	-1.6
3,673,742	-		Pf1N1B4_3287	0.71	-0.4
3,673,946	+		Pf1N1B4_3287	0.85	+1.9
3,673,947	-		Pf1N1B4_3287	0.85	-0.8
3,674,000	+		Pf1N1B4_3287	0.89	-0.3
3,674,001	-		Pf1N1B4_3287	0.89	-1.0
3,674,001	-		Pf1N1B4_3287	0.89	+1.5
3,674,001	-		Pf1N1B4_3287	0.89	+0.0
3,674,002	+		Pf1N1B4_3287	0.89	+1.5
3,674,002	+		Pf1N1B4_3287	0.89	-2.6
3,674,002	+		Pf1N1B4_3287	0.89	-1.5
3,674,002	+		Pf1N1B4_3287	0.89	+0.7
3,674,002	+				-1.1
3,674,003	-		Pf1N1B4_3287	0.89	-1.5
3,674,003	-		Pf1N1B4_3287	0.89	+2.9
3,674,003	-		Pf1N1B4_3287	0.89	-0.6
3,674,003	-		Pf1N1B4_3287	0.89	-0.2
3,674,003	-		Pf1N1B4_3287	0.89	-0.1
3,674,003	-		Pf1N1B4_3287	0.89	+1.7
3,674,003	-		Pf1N1B4_3287	0.89	-0.4
3,674,004	+		Pf1N1B4_3287	0.89	-0.1
3,674,004	+		Pf1N1B4_3287	0.89	+1.5
3,674,005	-		Pf1N1B4_3287	0.89	+0.5
3,674,005	-				+0.3
3,674,005	-		Pf1N1B4_3287	0.89	+0.5
3,674,005	-		Pf1N1B4_3287	0.89	+0.3
3,674,005	-		Pf1N1B4_3287	0.89	+2.0
3,674,005	-		Pf1N1B4_3287	0.89	-0.1
3,674,005	-		Pf1N1B4_3287	0.89	-0.1
3,674,005	-		Pf1N1B4_3287	0.89	-1.3
3,674,111	-				+0.8
3,674,166	-				-1.1
3,674,252	+				+0.1
3,674,252	+				+0.2
3,674,252	+				-0.5
3,674,253	-				+0.1
3,674,253	-				+0.2
3,674,281	+				-0.3
3,674,281	+				+0.7
3,674,281	+				-0.1
3,674,281	+				-0.8
3,674,281	+				-1.6
3,674,281	+				+0.4
3,674,281	+				-1.2
3,674,282	-				+1.3
3,674,282	-				-0.5
3,674,282	-				-1.8
3,674,282	-				-0.5
3,674,282	-				-0.7
3,674,282	-				+0.1
3,674,282	-				-1.8
3,674,282	-				-2.1
3,674,283	+				+0.3
3,674,283	+				-1.9
3,674,283	+				+0.5
3,674,283	+				-0.1
3,674,283	+				-1.1
3,674,283	+				-0.8
3,674,284	-				-0.1
3,674,309	+				-1.1
3,674,310	-				-0.9
3,674,320	+				-0.4
3,674,320	+				+2.0
3,674,336	+				+0.2
3,674,381	+				-0.1
3,674,382	-				-0.2
3,674,382	-				+0.9
3,674,428	+		Pf1N1B4_3288	0.12	+1.4
3,674,428	+		Pf1N1B4_3288	0.12	-1.0
3,674,428	+		Pf1N1B4_3288	0.12	-0.1
3,674,428	+		Pf1N1B4_3288	0.12	-1.2
3,674,428	+		Pf1N1B4_3288	0.12	-0.1
3,674,428	+		Pf1N1B4_3288	0.12	-0.3
3,674,428	+				-0.1
3,674,429	-		Pf1N1B4_3288	0.12	-0.5
3,674,429	-		Pf1N1B4_3288	0.12	+1.0
3,674,431	+				+2.3
3,674,431	+		Pf1N1B4_3288	0.12	+3.5
3,674,432	-		Pf1N1B4_3288	0.12	-0.6
3,674,432	-				+1.5
3,674,470	+		Pf1N1B4_3288	0.14	-2.1
3,674,470	+		Pf1N1B4_3288	0.14	-1.6
3,674,470	+		Pf1N1B4_3288	0.14	-0.5
3,674,470	+		Pf1N1B4_3288	0.14	-2.1
3,674,470	+				+1.5
3,674,470	+		Pf1N1B4_3288	0.14	+0.2
3,674,471	-		Pf1N1B4_3288	0.14	-0.5
3,674,471	-		Pf1N1B4_3288	0.14	+0.2
3,674,471	-		Pf1N1B4_3288	0.14	-2.6
3,674,471	-		Pf1N1B4_3288	0.14	-1.6
3,674,471	-		Pf1N1B4_3288	0.14	+0.3
3,674,509	+		Pf1N1B4_3288	0.16	+0.5
3,674,509	+		Pf1N1B4_3288	0.16	-1.3
3,674,509	+		Pf1N1B4_3288	0.16	-0.8
3,674,509	+		Pf1N1B4_3288	0.16	+0.5
3,674,510	-		Pf1N1B4_3288	0.16	-0.2
3,674,510	-		Pf1N1B4_3288	0.16	+0.3
3,674,510	-		Pf1N1B4_3288	0.16	-0.1
3,674,510	-		Pf1N1B4_3288	0.16	-1.5
3,674,510	-		Pf1N1B4_3288	0.16	-0.1
3,674,554	+		Pf1N1B4_3288	0.19	-0.5
3,674,555	-		Pf1N1B4_3288	0.19	-0.9
3,674,555	-		Pf1N1B4_3288	0.19	-1.7
3,674,573	-		Pf1N1B4_3288	0.20	+0.3
3,674,581	+		Pf1N1B4_3288	0.20	-0.5
3,674,581	+		Pf1N1B4_3288	0.20	-0.5
3,674,581	+		Pf1N1B4_3288	0.20	+0.3
3,674,582	-				-0.5
3,674,736	+		Pf1N1B4_3288	0.29	-0.3
3,674,737	-		Pf1N1B4_3288	0.29	+1.1
3,674,767	+				-0.8
3,674,767	+		Pf1N1B4_3288	0.31	-2.5
3,674,768	-		Pf1N1B4_3288	0.31	-0.3
3,674,768	-		Pf1N1B4_3288	0.31	-0.5
3,674,918	+		Pf1N1B4_3288	0.39	+0.9
3,674,918	+		Pf1N1B4_3288	0.39	+0.7
3,674,918	+		Pf1N1B4_3288	0.39	-1.6
3,674,919	-		Pf1N1B4_3288	0.39	+1.1
3,674,919	-		Pf1N1B4_3288	0.39	-0.6
3,674,938	-		Pf1N1B4_3288	0.41	+1.1
3,674,938	-				+0.5
3,674,997	-		Pf1N1B4_3288	0.44	+1.6
3,674,997	-		Pf1N1B4_3288	0.44	+0.8
3,674,997	-		Pf1N1B4_3288	0.44	+0.2
3,675,037	+				+0.2
3,675,037	+		Pf1N1B4_3288	0.46	-0.2
3,675,037	+		Pf1N1B4_3288	0.46	+1.9
3,675,038	-		Pf1N1B4_3288	0.46	+0.2
3,675,038	-		Pf1N1B4_3288	0.46	-2.2
3,675,135	+		Pf1N1B4_3288	0.52	+0.3
3,675,136	-		Pf1N1B4_3288	0.52	-0.8
3,675,149	+		Pf1N1B4_3288	0.52	+0.2
3,675,150	-		Pf1N1B4_3288	0.52	+0.9
3,675,177	+		Pf1N1B4_3288	0.54	+0.5
3,675,177	+		Pf1N1B4_3288	0.54	-0.1
3,675,177	+		Pf1N1B4_3288	0.54	-1.8
3,675,177	+		Pf1N1B4_3288	0.54	-1.5
3,675,178	-		Pf1N1B4_3288	0.54	-1.1
3,675,178	-		Pf1N1B4_3288	0.54	+1.9
3,675,178	-				-0.5
3,675,178	-		Pf1N1B4_3288	0.54	-0.8
3,675,178	-		Pf1N1B4_3288	0.54	+0.6
3,675,178	-		Pf1N1B4_3288	0.54	+2.6
3,675,178	-		Pf1N1B4_3288	0.54	-1.6
3,675,181	+		Pf1N1B4_3288	0.54	-0.1
3,675,181	+		Pf1N1B4_3288	0.54	-0.1
3,675,181	+		Pf1N1B4_3288	0.54	+0.2
3,675,181	+		Pf1N1B4_3288	0.54	-1.6
3,675,181	+		Pf1N1B4_3288	0.54	-0.6
3,675,181	+		Pf1N1B4_3288	0.54	+2.1
3,675,181	+		Pf1N1B4_3288	0.54	-1.1
3,675,181	+		Pf1N1B4_3288	0.54	+0.2
3,675,181	+		Pf1N1B4_3288	0.54	-0.1
3,675,182	-		Pf1N1B4_3288	0.54	+1.5
3,675,182	-		Pf1N1B4_3288	0.54	-1.1
3,675,182	-		Pf1N1B4_3288	0.54	-2.6
3,675,182	-		Pf1N1B4_3288	0.54	-0.6
3,675,182	-		Pf1N1B4_3288	0.54	+0.8
3,675,182	-		Pf1N1B4_3288	0.54	-2.1
3,675,182	-		Pf1N1B4_3288	0.54	+1.2
3,675,182	-		Pf1N1B4_3288	0.54	-0.9
3,675,182	-		Pf1N1B4_3288	0.54	+0.2
3,675,182	-				+0.5
3,675,182	-		Pf1N1B4_3288	0.54	-0.1
3,675,182	-		Pf1N1B4_3288	0.54	-2.5
3,675,182	-		Pf1N1B4_3288	0.54	+2.8
3,675,182	-		Pf1N1B4_3288	0.54	+1.2
3,675,182	-		Pf1N1B4_3288	0.54	-0.1
3,675,182	-		Pf1N1B4_3288	0.54	-0.4
3,675,203	-		Pf1N1B4_3288	0.55	-1.1
3,675,203	-				-0.1
3,675,203	-		Pf1N1B4_3288	0.55	-1.5
3,675,265	+		Pf1N1B4_3288	0.59	+1.5
3,675,337	-		Pf1N1B4_3288	0.63	-2.5
3,675,415	+		Pf1N1B4_3288	0.67	-0.6
3,675,415	+		Pf1N1B4_3288	0.67	-0.3
3,675,416	-		Pf1N1B4_3288	0.67	-0.5
3,675,416	-		Pf1N1B4_3288	0.67	+1.5
3,675,439	-		Pf1N1B4_3288	0.69	-0.6
3,675,439	-		Pf1N1B4_3288	0.69	-1.6
3,675,439	-		Pf1N1B4_3288	0.69	+0.8
3,675,480	+		Pf1N1B4_3288	0.71	-1.3
3,675,481	-		Pf1N1B4_3288	0.71	+1.5
3,675,484	+		Pf1N1B4_3288	0.71	-1.9
3,675,485	-		Pf1N1B4_3288	0.71	-0.8
3,675,485	-		Pf1N1B4_3288	0.71	-1.6
3,675,485	-		Pf1N1B4_3288	0.71	-0.1
3,675,485	-		Pf1N1B4_3288	0.71	+0.7
3,675,485	-		Pf1N1B4_3288	0.71	-0.9
3,675,485	-		Pf1N1B4_3288	0.71	+0.2
3,675,485	-				+1.5
3,675,553	-		Pf1N1B4_3288	0.75	+1.0
3,675,568	+		Pf1N1B4_3288	0.76	-1.6
3,675,569	-				-0.5
3,675,569	-		Pf1N1B4_3288	0.76	-2.4
3,675,569	-		Pf1N1B4_3288	0.76	+0.6
3,675,592	+				-1.1
3,675,592	+		Pf1N1B4_3288	0.77	-0.7
3,675,592	+		Pf1N1B4_3288	0.77	+1.2
3,675,592	+		Pf1N1B4_3288	0.77	+0.5
3,675,593	-		Pf1N1B4_3288	0.77	+0.2
3,675,625	+		Pf1N1B4_3288	0.79	-0.6
3,675,625	+		Pf1N1B4_3288	0.79	-0.5
3,675,626	-		Pf1N1B4_3288	0.79	-1.1
3,675,626	-		Pf1N1B4_3288	0.79	-0.1
3,675,626	-		Pf1N1B4_3288	0.79	+0.5
3,675,626	-		Pf1N1B4_3288	0.79	-0.5
3,675,632	-		Pf1N1B4_3288	0.80	-1.6
3,675,640	+		Pf1N1B4_3288	0.80	-2.6
3,675,875	-				+1.9
3,675,875	-				-0.6
3,675,875	-				-0.4
3,675,875	-				+0.9
3,675,880	+				-0.4
3,675,881	-				-0.7
3,675,881	-				+0.5
3,675,897	-				-0.8
3,675,985	-				+0.5
3,676,240	+		Pf1N1B4_3289	0.23	-1.0
3,676,241	-		Pf1N1B4_3289	0.24	-0.9
3,676,241	-		Pf1N1B4_3289	0.24	-1.1
3,676,241	-		Pf1N1B4_3289	0.24	+1.5
3,676,326	-		Pf1N1B4_3289	0.38	+0.1
3,676,416	+				+0.2
3,676,417	-		Pf1N1B4_3289	0.54	+0.5
3,676,417	-		Pf1N1B4_3289	0.54	+0.8
3,676,452	+		Pf1N1B4_3289	0.60	+1.5
3,676,453	-		Pf1N1B4_3289	0.60	+0.9
3,676,510	+		Pf1N1B4_3289	0.70	-2.1
3,676,510	+		Pf1N1B4_3289	0.70	-0.4
3,676,510	+		Pf1N1B4_3289	0.70	-2.9
3,676,511	-		Pf1N1B4_3289	0.70	+0.9
3,676,511	-		Pf1N1B4_3289	0.70	-1.1
3,676,511	-		Pf1N1B4_3289	0.70	+0.9
3,676,520	+		Pf1N1B4_3289	0.72	+1.5
3,676,521	-		Pf1N1B4_3289	0.72	+0.8
3,676,564	+		Pf1N1B4_3289	0.79	-0.1
3,676,565	-				-0.3
3,676,565	-		Pf1N1B4_3289	0.80	-2.0
3,676,574	+		Pf1N1B4_3289	0.81	-2.1
3,676,581	+		Pf1N1B4_3289	0.82	+0.9
3,676,582	-		Pf1N1B4_3289	0.83	-1.1
3,676,582	-		Pf1N1B4_3289	0.83	-0.8
3,676,590	+		Pf1N1B4_3289	0.84	-1.4
3,676,590	+		Pf1N1B4_3289	0.84	+2.0
3,676,590	+		Pf1N1B4_3289	0.84	-1.1
3,676,591	-		Pf1N1B4_3289	0.84	-0.1
3,676,591	-		Pf1N1B4_3289	0.84	-2.3
3,676,594	+		Pf1N1B4_3289	0.85	+0.5
3,676,594	+		Pf1N1B4_3289	0.85	-0.6
3,676,594	+		Pf1N1B4_3289	0.85	-1.3
3,676,595	-		Pf1N1B4_3289	0.85	+0.5
3,676,595	-		Pf1N1B4_3289	0.85	-0.1
3,676,615	+		Pf1N1B4_3289	0.88	+0.7
3,676,647	+				-1.3
3,676,647	+				+2.1
3,676,648	-				-0.1
3,676,648	-				-1.1
3,676,648	-				-0.1
3,676,856	+				+1.5
3,676,857	-				+0.2
3,676,864	+				-0.2
3,676,865	-				+2.1
3,676,865	-				+1.5
3,676,865	-				-1.1
3,676,865	-				+0.2
3,676,887	+				-1.3
3,676,887	+				-2.2
3,676,888	-				+0.1
3,676,888	-				+0.5
3,676,976	+		Pf1N1B4_3290	0.25	+1.5