Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3187

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
3,568,954	+				-1.0
3,568,954	+				+1.7
3,569,013	+				+0.1
3,569,013	+				-1.6
3,569,025	+				-0.6
3,569,344	-				-2.3
3,569,358	+				-0.9
3,569,386	+		Pf1N1B4_3186	0.11	+1.9
3,569,386	+		Pf1N1B4_3186	0.11	-0.6
3,569,386	+		Pf1N1B4_3186	0.11	+1.0
3,569,387	-		Pf1N1B4_3186	0.12	+0.1
3,569,387	-		Pf1N1B4_3186	0.12	+0.2
3,569,387	-				-0.8
3,569,387	-		Pf1N1B4_3186	0.12	-0.2
3,569,387	-		Pf1N1B4_3186	0.12	+0.5
3,569,401	-		Pf1N1B4_3186	0.14	+0.2
3,569,401	-		Pf1N1B4_3186	0.14	-1.8
3,569,513	+		Pf1N1B4_3186	0.37	+0.6
3,569,513	+		Pf1N1B4_3186	0.37	+0.2
3,569,514	-		Pf1N1B4_3186	0.38	-0.9
3,569,519	-		Pf1N1B4_3186	0.39	-0.8
3,569,577	+		Pf1N1B4_3186	0.51	-1.9
3,569,577	+		Pf1N1B4_3186	0.51	-1.0
3,569,577	+		Pf1N1B4_3186	0.51	-0.5
3,569,577	+		Pf1N1B4_3186	0.51	-0.2
3,569,577	+		Pf1N1B4_3186	0.51	-0.9
3,569,577	+		Pf1N1B4_3186	0.51	+0.3
3,569,577	+		Pf1N1B4_3186	0.51	-0.3
3,569,577	+		Pf1N1B4_3186	0.51	-0.2
3,569,577	+		Pf1N1B4_3186	0.51	-0.2
3,569,577	+		Pf1N1B4_3186	0.51	+0.5
3,569,577	+		Pf1N1B4_3186	0.51	+3.0
3,569,577	+		Pf1N1B4_3186	0.51	+2.5
3,569,577	+		Pf1N1B4_3186	0.51	+1.2
3,569,577	+		Pf1N1B4_3186	0.51	-1.4
3,569,577	+		Pf1N1B4_3186	0.51	-0.5
3,569,578	-		Pf1N1B4_3186	0.51	+0.4
3,569,578	-		Pf1N1B4_3186	0.51	+0.0
3,569,578	-		Pf1N1B4_3186	0.51	-0.6
3,569,578	-		Pf1N1B4_3186	0.51	-0.7
3,569,578	-		Pf1N1B4_3186	0.51	-2.0
3,569,578	-		Pf1N1B4_3186	0.51	-1.0
3,569,578	-		Pf1N1B4_3186	0.51	-1.1
3,569,578	-		Pf1N1B4_3186	0.51	-0.6
3,569,676	+		Pf1N1B4_3186	0.71	+0.6
3,569,676	+		Pf1N1B4_3186	0.71	+1.4
3,569,793	+				-0.5
3,569,793	+				-0.5
3,569,793	+				-2.5
3,569,793	+				+1.2
3,569,794	-				+0.2
3,569,824	+				-0.3
3,569,825	-				+0.9
3,569,845	+				-0.3
3,569,845	+				+0.6
3,569,845	+				+1.3
3,569,879	+				-1.3
3,569,879	+				+0.4
3,569,880	-				+0.2
3,569,944	+				+0.5
3,570,000	-		Pf1N1B4_3187	0.14	-0.1
3,570,000	-		Pf1N1B4_3187	0.14	+0.3
3,570,000	-		Pf1N1B4_3187	0.14	+0.8
3,570,037	+		Pf1N1B4_3187	0.22	+0.7
3,570,037	+		Pf1N1B4_3187	0.22	-2.7
3,570,038	-		Pf1N1B4_3187	0.22	-1.2
3,570,038	-		Pf1N1B4_3187	0.22	+1.0
3,570,058	-		Pf1N1B4_3187	0.27	+1.0
3,570,261	+		Pf1N1B4_3187	0.69	+1.3
3,570,261	+		Pf1N1B4_3187	0.69	+1.1
3,570,261	+		Pf1N1B4_3187	0.69	+0.4
3,570,261	+		Pf1N1B4_3187	0.69	-1.2
3,570,262	-		Pf1N1B4_3187	0.69	-0.9
3,570,262	-		Pf1N1B4_3187	0.69	-0.1
3,570,262	-		Pf1N1B4_3187	0.69	+1.1
3,570,262	-		Pf1N1B4_3187	0.69	+1.8
3,570,265	+		Pf1N1B4_3187	0.70	-0.0
3,570,266	-		Pf1N1B4_3187	0.70	-0.3
3,570,282	+		Pf1N1B4_3187	0.74	+0.9
3,570,282	+		Pf1N1B4_3187	0.74	-0.0
3,570,282	+		Pf1N1B4_3187	0.74	+0.5
3,570,282	+		Pf1N1B4_3187	0.74	+0.1
3,570,282	+		Pf1N1B4_3187	0.74	-0.0
3,570,282	+		Pf1N1B4_3187	0.74	-1.6
3,570,282	+		Pf1N1B4_3187	0.74	-1.3
3,570,283	-		Pf1N1B4_3187	0.74	+0.1
3,570,283	-				+1.0
3,570,283	-		Pf1N1B4_3187	0.74	+0.2
3,570,283	-		Pf1N1B4_3187	0.74	+1.8
3,570,283	-		Pf1N1B4_3187	0.74	+1.5
3,570,283	-		Pf1N1B4_3187	0.74	+0.0
3,570,283	-		Pf1N1B4_3187	0.74	+0.4
3,570,283	-		Pf1N1B4_3187	0.74	-0.6
3,570,283	-		Pf1N1B4_3187	0.74	-0.3
3,570,286	+		Pf1N1B4_3187	0.74	-0.8
3,570,286	+		Pf1N1B4_3187	0.74	+0.5
3,570,287	-		Pf1N1B4_3187	0.75	+0.5
3,570,287	-		Pf1N1B4_3187	0.75	+0.5
3,570,287	-		Pf1N1B4_3187	0.75	-0.2
3,570,287	-		Pf1N1B4_3187	0.75	+0.1
3,570,346	+		Pf1N1B4_3187	0.87	+0.8
3,570,401	+				+1.2
3,570,401	+				+2.1
3,570,402	-				+0.8
3,570,402	-				+0.5
3,570,402	-				+1.0
3,570,402	-				-2.2
3,570,402	-				+0.6
3,570,402	-				+2.4
3,570,402	-				-0.5
3,570,402	-				+0.2
3,570,402	-				-0.8
3,570,422	+				+0.5
3,570,422	+				+0.9
3,570,423	-				-2.8
3,570,423	-				-0.4
3,570,483	+		Pf1N1B4_3188	0.14	-1.8
3,570,483	+		Pf1N1B4_3188	0.14	+0.6
3,570,484	-		Pf1N1B4_3188	0.14	+0.8
3,570,484	-		Pf1N1B4_3188	0.14	-2.0
3,570,484	-		Pf1N1B4_3188	0.14	-1.5
3,570,485	+				+1.5
3,570,485	+		Pf1N1B4_3188	0.15	-0.5
3,570,485	+		Pf1N1B4_3188	0.15	-0.2
3,570,485	+		Pf1N1B4_3188	0.15	-0.5
3,570,486	-		Pf1N1B4_3188	0.15	-2.2
3,570,486	-		Pf1N1B4_3188	0.15	-1.8
3,570,500	+		Pf1N1B4_3188	0.18	-1.9
3,570,500	+		Pf1N1B4_3188	0.18	-1.5
3,570,500	+		Pf1N1B4_3188	0.18	+0.7
3,570,500	+		Pf1N1B4_3188	0.18	+0.1
3,570,500	+		Pf1N1B4_3188	0.18	-0.5
3,570,501	-		Pf1N1B4_3188	0.18	-2.3
3,570,504	+		Pf1N1B4_3188	0.18	-1.3
3,570,504	+		Pf1N1B4_3188	0.18	-2.0
3,570,505	-		Pf1N1B4_3188	0.19	-1.0
3,570,517	+		Pf1N1B4_3188	0.21	+1.1
3,570,517	+		Pf1N1B4_3188	0.21	-0.4
3,570,517	+		Pf1N1B4_3188	0.21	-1.2
3,570,518	-		Pf1N1B4_3188	0.21	-1.9
3,570,518	-		Pf1N1B4_3188	0.21	-0.0
3,570,518	-		Pf1N1B4_3188	0.21	-2.0
3,570,518	-		Pf1N1B4_3188	0.21	-0.3
3,570,898	-				+1.5
3,570,898	-				-2.5
3,570,898	-				+0.9
3,570,898	-				-0.2
3,570,938	+				+0.7
3,570,961	+				-0.4
3,570,961	+				-0.3
3,570,961	+				-1.6
3,570,961	+				-0.8
3,570,961	+				-1.6
3,570,962	-				-1.9
3,571,085	-				+0.5
3,571,109	+				+0.5
3,571,109	+				+0.5
3,571,109	+				+3.7
3,571,109	+				+1.5
3,571,109	+				-0.1
3,571,109	+				-0.8
3,571,110	-				-1.4
3,571,110	-				-2.3
3,571,110	-				-0.2
3,571,110	-				-1.5
3,571,110	-				-1.3
3,571,110	-				-0.1
3,571,110	-				-0.6
3,571,110	-				+0.3
3,571,119	+				+0.3
3,571,119	+				+1.5
3,571,119	+				+0.4
3,571,119	+				-1.3
3,571,119	+				-2.2
3,571,119	+				+0.5
3,571,119	+				-1.0
3,571,119	+				+0.5
3,571,135	-				+2.3
3,571,135	-				-1.8
3,571,381	+		Pf1N1B4_3189	0.39	+2.5
3,571,381	+		Pf1N1B4_3189	0.39	-0.3
3,571,381	+		Pf1N1B4_3189	0.39	-0.1
3,571,382	-		Pf1N1B4_3189	0.39	-1.5
3,571,382	-				+0.2
3,571,382	-		Pf1N1B4_3189	0.39	-2.4