Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3185

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
3,568,137	+		Pf1N1B4_3183	0.88	-1.0
3,568,138	-		Pf1N1B4_3183	0.88	-2.3
3,568,197	+				-1.5
3,568,198	-				-0.0
3,568,200	+				-0.2
3,568,200	+				-0.3
3,568,201	-				+0.6
3,568,201	-				-1.4
3,568,201	-				-0.9
3,568,201	-				-1.0
3,568,201	-				+2.6
3,568,201	-				-1.4
3,568,201	-				-1.9
3,568,245	+				+1.1
3,568,302	-				-1.0
3,568,787	+		Pf1N1B4_3184	0.77	-0.5
3,568,787	+		Pf1N1B4_3184	0.77	+1.1
3,568,788	-		Pf1N1B4_3184	0.77	+0.3
3,568,806	+		Pf1N1B4_3184	0.80	-1.0
3,568,807	-		Pf1N1B4_3184	0.80	+0.1
3,568,872	+				-1.0
3,568,872	+				-2.2
3,568,914	+				+0.4
3,568,954	+				-1.0
3,568,954	+				+1.7
3,569,013	+				+0.1
3,569,013	+				-1.6
3,569,025	+				-0.6
3,569,344	-				-2.3
3,569,358	+				-0.9
3,569,386	+		Pf1N1B4_3186	0.11	+1.9
3,569,386	+		Pf1N1B4_3186	0.11	-0.6
3,569,386	+		Pf1N1B4_3186	0.11	+1.0
3,569,387	-		Pf1N1B4_3186	0.12	+0.1
3,569,387	-		Pf1N1B4_3186	0.12	+0.2
3,569,387	-				-0.8
3,569,387	-		Pf1N1B4_3186	0.12	-0.2
3,569,387	-		Pf1N1B4_3186	0.12	+0.5
3,569,401	-		Pf1N1B4_3186	0.14	+0.2
3,569,401	-		Pf1N1B4_3186	0.14	-1.8
3,569,513	+		Pf1N1B4_3186	0.37	+0.6
3,569,513	+		Pf1N1B4_3186	0.37	+0.2
3,569,514	-		Pf1N1B4_3186	0.38	-0.9
3,569,519	-		Pf1N1B4_3186	0.39	-0.8
3,569,577	+		Pf1N1B4_3186	0.51	-1.9
3,569,577	+		Pf1N1B4_3186	0.51	-1.0
3,569,577	+		Pf1N1B4_3186	0.51	-0.5
3,569,577	+		Pf1N1B4_3186	0.51	-0.2
3,569,577	+		Pf1N1B4_3186	0.51	-0.9
3,569,577	+		Pf1N1B4_3186	0.51	+0.3
3,569,577	+		Pf1N1B4_3186	0.51	-0.3
3,569,577	+		Pf1N1B4_3186	0.51	-0.2
3,569,577	+		Pf1N1B4_3186	0.51	-0.2
3,569,577	+		Pf1N1B4_3186	0.51	+0.5
3,569,577	+		Pf1N1B4_3186	0.51	+3.0
3,569,577	+		Pf1N1B4_3186	0.51	+2.5
3,569,577	+		Pf1N1B4_3186	0.51	+1.2
3,569,577	+		Pf1N1B4_3186	0.51	-1.4
3,569,577	+		Pf1N1B4_3186	0.51	-0.5
3,569,578	-		Pf1N1B4_3186	0.51	+0.4
3,569,578	-		Pf1N1B4_3186	0.51	+0.0
3,569,578	-		Pf1N1B4_3186	0.51	-0.6
3,569,578	-		Pf1N1B4_3186	0.51	-0.7
3,569,578	-		Pf1N1B4_3186	0.51	-2.0
3,569,578	-		Pf1N1B4_3186	0.51	-1.0
3,569,578	-		Pf1N1B4_3186	0.51	-1.1
3,569,578	-		Pf1N1B4_3186	0.51	-0.6
3,569,676	+		Pf1N1B4_3186	0.71	+0.6
3,569,676	+		Pf1N1B4_3186	0.71	+1.4
3,569,793	+				-0.5
3,569,793	+				-0.5
3,569,793	+				-2.5
3,569,793	+				+1.2
3,569,794	-				+0.2
3,569,824	+				-0.3
3,569,825	-				+0.9
3,569,845	+				-0.3
3,569,845	+				+0.6
3,569,845	+				+1.3
3,569,879	+				-1.3
3,569,879	+				+0.4
3,569,880	-				+0.2
3,569,944	+				+0.5
3,570,000	-		Pf1N1B4_3187	0.14	-0.1
3,570,000	-		Pf1N1B4_3187	0.14	+0.3
3,570,000	-		Pf1N1B4_3187	0.14	+0.8
3,570,037	+		Pf1N1B4_3187	0.22	+0.7
3,570,037	+		Pf1N1B4_3187	0.22	-2.7
3,570,038	-		Pf1N1B4_3187	0.22	-1.2
3,570,038	-		Pf1N1B4_3187	0.22	+1.0
3,570,058	-		Pf1N1B4_3187	0.27	+1.0
3,570,261	+		Pf1N1B4_3187	0.69	+1.3
3,570,261	+		Pf1N1B4_3187	0.69	+1.1
3,570,261	+		Pf1N1B4_3187	0.69	+0.4
3,570,261	+		Pf1N1B4_3187	0.69	-1.2
3,570,262	-		Pf1N1B4_3187	0.69	-0.9
3,570,262	-		Pf1N1B4_3187	0.69	-0.1
3,570,262	-		Pf1N1B4_3187	0.69	+1.1
3,570,262	-		Pf1N1B4_3187	0.69	+1.8
3,570,265	+		Pf1N1B4_3187	0.70	-0.0
3,570,266	-		Pf1N1B4_3187	0.70	-0.3
3,570,282	+		Pf1N1B4_3187	0.74	+0.9
3,570,282	+		Pf1N1B4_3187	0.74	-0.0
3,570,282	+		Pf1N1B4_3187	0.74	+0.5
3,570,282	+		Pf1N1B4_3187	0.74	+0.1
3,570,282	+		Pf1N1B4_3187	0.74	-0.0
3,570,282	+		Pf1N1B4_3187	0.74	-1.6
3,570,282	+		Pf1N1B4_3187	0.74	-1.3
3,570,283	-		Pf1N1B4_3187	0.74	+0.1
3,570,283	-				+1.0
3,570,283	-		Pf1N1B4_3187	0.74	+0.2
3,570,283	-		Pf1N1B4_3187	0.74	+1.8
3,570,283	-		Pf1N1B4_3187	0.74	+1.5
3,570,283	-		Pf1N1B4_3187	0.74	+0.0
3,570,283	-		Pf1N1B4_3187	0.74	+0.4
3,570,283	-		Pf1N1B4_3187	0.74	-0.6
3,570,283	-		Pf1N1B4_3187	0.74	-0.3
3,570,286	+		Pf1N1B4_3187	0.74	-0.8
3,570,286	+		Pf1N1B4_3187	0.74	+0.5
3,570,287	-		Pf1N1B4_3187	0.75	+0.5
3,570,287	-		Pf1N1B4_3187	0.75	+0.5
3,570,287	-		Pf1N1B4_3187	0.75	-0.2
3,570,287	-		Pf1N1B4_3187	0.75	+0.1