Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3176

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
3,557,218	-				+0.2
3,557,218	-				-0.7
3,557,218	-				-0.5
3,557,273	+				-0.0
3,557,273	+				-0.6
3,557,273	+				-0.3
3,557,273	+				+1.6
3,557,273	+				-2.3
3,557,273	+				+2.8
3,557,274	-				-1.4
3,557,274	-				+1.6
3,557,274	-				-0.4
3,557,274	-				+0.8
3,557,274	-				+0.3
3,557,274	-				-0.7
3,557,586	+		Pf1N1B4_3175	0.48	-0.4
3,557,587	-		Pf1N1B4_3175	0.48	-0.4
3,557,943	+				-1.1
3,557,943	+				+0.9
3,557,944	-				+1.0
3,557,944	-				-0.7
3,557,950	+				-0.3
3,557,950	+				+0.4
3,557,951	-				-2.8
3,557,951	-				+0.3
3,557,976	+				-2.0
3,557,977	-				-0.5
3,557,977	-				-0.7
3,558,006	+				-0.8
3,558,006	+				-1.6
3,558,006	+				-0.0
3,558,006	+				+2.0
3,558,007	-				+0.3
3,558,007	-				-0.0
3,558,007	-				+0.2
3,558,007	-				+0.6
3,558,007	-				-1.0
3,558,007	-				+1.6
3,558,091	+				-0.4
3,558,091	+				-1.6
3,558,091	+				-0.7
3,558,092	-				+0.9
3,558,092	-				-0.6
3,558,092	-				+0.3
3,558,092	-				-0.5
3,558,092	-				-1.6
3,558,092	-				-0.8
3,558,181	+		Pf1N1B4_3176	0.17	+1.2
3,558,322	+		Pf1N1B4_3176	0.29	-0.3
3,558,323	-		Pf1N1B4_3176	0.29	-1.4
3,558,533	-		Pf1N1B4_3176	0.48	-1.3
3,558,577	+		Pf1N1B4_3176	0.52	+0.6
3,558,577	+		Pf1N1B4_3176	0.52	+2.5
3,558,577	+		Pf1N1B4_3176	0.52	+0.6
3,558,577	+		Pf1N1B4_3176	0.52	-0.4
3,558,578	-		Pf1N1B4_3176	0.52	+1.0
3,558,578	-		Pf1N1B4_3176	0.52	+0.1
3,558,735	-		Pf1N1B4_3176	0.66	-0.8
3,559,012	+				-0.8
3,559,012	+				-0.4
3,559,012	+				-0.8
3,559,012	+				-0.6
3,559,013	-				+0.4
3,559,013	-				-0.4
3,559,013	-				-0.8
3,559,114	+				+0.5
3,559,114	+				+0.2
3,559,114	+				+0.2
3,559,114	+				+1.5
3,559,114	+				+1.0
3,559,115	-				-0.0
3,559,115	-				-1.3
3,559,127	-				+0.5
3,559,207	+		Pf1N1B4_3177	0.12	-0.0
3,559,207	+		Pf1N1B4_3177	0.12	+0.7
3,559,208	-		Pf1N1B4_3177	0.12	-2.2
3,559,281	+				+0.1
3,559,281	+		Pf1N1B4_3177	0.22	+0.3
3,559,348	+		Pf1N1B4_3177	0.31	-1.2
3,559,348	+		Pf1N1B4_3177	0.31	+0.5
3,559,348	+		Pf1N1B4_3177	0.31	+0.4
3,559,348	+		Pf1N1B4_3177	0.31	-0.0
3,559,348	+		Pf1N1B4_3177	0.31	-0.7
3,559,349	-		Pf1N1B4_3177	0.32	+0.7
3,559,349	-		Pf1N1B4_3177	0.32	-2.3
3,559,351	+		Pf1N1B4_3177	0.32	-0.0
3,559,351	+		Pf1N1B4_3177	0.32	+0.2
3,559,351	+		Pf1N1B4_3177	0.32	-1.3
3,559,351	+		Pf1N1B4_3177	0.32	-0.8
3,559,352	-		Pf1N1B4_3177	0.32	-0.7
3,559,390	+		Pf1N1B4_3177	0.37	-0.0
3,559,390	+		Pf1N1B4_3177	0.37	+0.5
3,559,391	-		Pf1N1B4_3177	0.37	-0.3
3,559,391	-		Pf1N1B4_3177	0.37	-1.6
3,559,397	-		Pf1N1B4_3177	0.38	-0.5
3,559,397	-		Pf1N1B4_3177	0.38	+0.2
3,559,420	+		Pf1N1B4_3177	0.41	+1.3
3,559,489	+		Pf1N1B4_3177	0.51	-1.0
3,559,489	+		Pf1N1B4_3177	0.51	+0.5
3,559,588	+		Pf1N1B4_3177	0.65	-1.5
3,559,588	+		Pf1N1B4_3177	0.65	-0.0
3,559,588	+		Pf1N1B4_3177	0.65	-0.6
3,559,589	-		Pf1N1B4_3177	0.65	+2.1
3,559,589	-		Pf1N1B4_3177	0.65	-1.6
3,559,600	+		Pf1N1B4_3177	0.67	-1.3
3,559,601	-		Pf1N1B4_3177	0.67	-1.0
3,559,620	-		Pf1N1B4_3177	0.70	-0.9
3,559,621	+		Pf1N1B4_3177	0.70	-0.9
3,559,621	+		Pf1N1B4_3177	0.70	-0.3
3,559,621	+		Pf1N1B4_3177	0.70	+2.1
3,559,621	+		Pf1N1B4_3177	0.70	+1.0
3,559,621	+		Pf1N1B4_3177	0.70	+0.5
3,559,621	+		Pf1N1B4_3177	0.70	+1.1
3,559,621	+		Pf1N1B4_3177	0.70	+0.3
3,559,621	+		Pf1N1B4_3177	0.70	-0.8
3,559,621	+		Pf1N1B4_3177	0.70	-0.2
3,559,622	-		Pf1N1B4_3177	0.70	-1.6
3,559,622	-		Pf1N1B4_3177	0.70	+0.5
3,559,622	-				-0.3
3,559,622	-		Pf1N1B4_3177	0.70	+0.7
3,559,622	-		Pf1N1B4_3177	0.70	-0.8
3,559,645	+		Pf1N1B4_3177	0.73	+0.5
3,559,645	+		Pf1N1B4_3177	0.73	+0.5
3,559,646	-		Pf1N1B4_3177	0.73	-1.6
3,559,646	-		Pf1N1B4_3177	0.73	+1.1
3,559,646	-		Pf1N1B4_3177	0.73	+1.0
3,559,646	-		Pf1N1B4_3177	0.73	+1.5
3,559,646	-		Pf1N1B4_3177	0.73	+0.5
3,559,651	+		Pf1N1B4_3177	0.74	-1.1
3,559,651	+		Pf1N1B4_3177	0.74	+3.0
3,559,651	+		Pf1N1B4_3177	0.74	+2.0
3,559,651	+		Pf1N1B4_3177	0.74	-0.0
3,559,651	+		Pf1N1B4_3177	0.74	-0.6
3,559,651	+		Pf1N1B4_3177	0.74	+0.5
3,559,652	-		Pf1N1B4_3177	0.74	-0.5
3,559,652	-		Pf1N1B4_3177	0.74	-0.9
3,559,652	-		Pf1N1B4_3177	0.74	-0.0
3,559,675	+		Pf1N1B4_3177	0.77	+0.5
3,559,675	+		Pf1N1B4_3177	0.77	+0.9
3,559,675	+		Pf1N1B4_3177	0.77	+2.0
3,559,675	+		Pf1N1B4_3177	0.77	-0.2
3,559,675	+		Pf1N1B4_3177	0.77	+0.8
3,559,676	-		Pf1N1B4_3177	0.77	-0.2
3,559,676	-		Pf1N1B4_3177	0.77	+1.5
3,559,676	-				-0.0
3,559,676	-		Pf1N1B4_3177	0.77	-1.3
3,559,783	+				-0.5
3,559,793	+				-0.8
3,559,794	-				+0.5
3,559,796	-				+1.0
3,559,796	-				+0.9
3,559,796	-				-1.0
3,559,813	+				+0.3
3,559,813	+				-0.7
3,559,945	-		Pf1N1B4_3178	0.16	+2.6
3,559,945	-		Pf1N1B4_3178	0.16	+1.0
3,559,956	+		Pf1N1B4_3178	0.17	+2.6
3,559,956	+		Pf1N1B4_3178	0.17	-0.9
3,559,956	+		Pf1N1B4_3178	0.17	-2.1
3,559,957	-		Pf1N1B4_3178	0.17	-1.3
3,559,957	-		Pf1N1B4_3178	0.17	-0.6
3,559,957	-				-0.8