Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3117

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
3,502,423	+				+0.6
3,502,423	+				+2.9
3,502,423	+				-0.8
3,502,424	-				+0.1
3,502,424	-				+1.5
3,502,424	-				+0.3
3,502,425	+				-1.3
3,502,425	+				-0.9
3,502,425	+				+1.1
3,502,425	+				+0.9
3,502,425	+				-1.5
3,502,426	-				+1.8
3,502,426	-				+1.5
3,502,426	-				-0.0
3,502,463	+				+0.5
3,502,463	+				+1.5
3,502,476	+				+0.3
3,502,476	+				-1.5
3,502,476	+				+1.5
3,502,477	-				+1.0
3,502,489	-				+0.3
3,502,499	-				+0.5
3,502,516	-				+0.9
3,502,537	+				-0.6
3,502,636	-				+0.3
3,502,650	+				+2.0
3,502,651	-				-2.3
3,502,653	+				+1.5
3,502,654	-				-0.2
3,503,241	-				-1.6
3,503,292	+				-1.9
3,503,293	-				-2.3
3,503,315	+				+0.3
3,503,315	+				-1.0
3,503,315	+				+0.4
3,503,315	+				-0.3
3,503,315	+				-0.8
3,503,316	-				+0.8
3,503,329	+				-0.9
3,503,329	+				-1.6
3,503,330	-				+0.8
3,503,330	-				-0.9
3,503,334	+				-1.3
3,503,334	+				-2.4
3,503,334	+				+0.2
3,503,334	+				+0.7
3,503,334	+				+0.4
3,503,334	+				+1.9
3,503,334	+				-0.6
3,503,334	+				+2.1
3,503,334	+				+0.0
3,503,334	+				+1.5
3,503,334	+				+0.4
3,503,334	+				-0.6
3,503,334	+				+0.9
3,503,334	+				-1.2
3,503,334	+				+0.7
3,503,334	+				-1.8
3,503,334	+				+1.0
3,503,334	+				-0.5
3,503,334	+				+0.2
3,503,334	+				+1.0
3,503,334	+				+0.9
3,503,334	+				-0.8
3,503,334	+				-0.8
3,503,335	-				+1.4
3,503,335	-				-1.0
3,503,335	-				-2.1
3,503,335	-				+2.1
3,503,335	-				+0.7
3,503,335	-				+0.3
3,503,335	-				-0.0
3,503,335	-				+0.6
3,503,335	-				-0.5
3,503,335	-				+0.1
3,503,335	-				+3.0
3,503,336	+				+1.2
3,503,336	+				-0.4
3,503,336	+				+1.4
3,503,336	+				-0.6
3,503,336	+				-0.0
3,503,336	+				-0.0
3,503,337	-				-0.8
3,503,576	+		Pf1N1B4_3117	0.10	+2.4
3,503,576	+		Pf1N1B4_3117	0.10	+1.2
3,503,577	-		Pf1N1B4_3117	0.10	+0.2
3,503,577	-		Pf1N1B4_3117	0.10	+1.1
3,503,577	-		Pf1N1B4_3117	0.10	+0.4
3,503,702	+		Pf1N1B4_3117	0.15	-1.2
3,503,702	+		Pf1N1B4_3117	0.15	+2.0
3,503,702	+		Pf1N1B4_3117	0.15	+1.3
3,503,703	-		Pf1N1B4_3117	0.15	+2.6
3,503,724	-		Pf1N1B4_3117	0.16	+1.4
3,503,724	-		Pf1N1B4_3117	0.16	+1.3
3,504,017	+		Pf1N1B4_3117	0.27	-1.0
3,504,017	+		Pf1N1B4_3117	0.27	-0.5
3,504,017	+		Pf1N1B4_3117	0.27	+0.8
3,504,017	+		Pf1N1B4_3117	0.27	-0.3
3,504,017	+		Pf1N1B4_3117	0.27	-0.5
3,504,017	+		Pf1N1B4_3117	0.27	+0.6
3,504,018	-		Pf1N1B4_3117	0.27	+1.5
3,504,018	-		Pf1N1B4_3117	0.27	+2.2
3,504,106	-		Pf1N1B4_3117	0.31	+1.0
3,504,112	+		Pf1N1B4_3117	0.31	+0.9
3,504,112	+		Pf1N1B4_3117	0.31	+2.5
3,504,112	+		Pf1N1B4_3117	0.31	-1.1
3,504,112	+		Pf1N1B4_3117	0.31	-0.2
3,504,112	+		Pf1N1B4_3117	0.31	-1.2
3,504,113	-				+1.7
3,504,113	-		Pf1N1B4_3117	0.31	+0.4
3,504,302	+		Pf1N1B4_3117	0.38	-2.8
3,504,303	-		Pf1N1B4_3117	0.38	+0.5
3,504,418	-		Pf1N1B4_3117	0.43	+0.5
3,504,418	-		Pf1N1B4_3117	0.43	-1.6
3,504,419	+		Pf1N1B4_3117	0.43	+1.1
3,504,419	+		Pf1N1B4_3117	0.43	+2.0
3,504,419	+		Pf1N1B4_3117	0.43	-1.6
3,504,419	+		Pf1N1B4_3117	0.43	-0.6
3,504,419	+		Pf1N1B4_3117	0.43	-1.0
3,504,420	-		Pf1N1B4_3117	0.43	-1.5
3,504,420	-		Pf1N1B4_3117	0.43	+0.5
3,504,467	+		Pf1N1B4_3117	0.45	+1.7
3,504,467	+		Pf1N1B4_3117	0.45	+1.1
3,504,468	-		Pf1N1B4_3117	0.45	+1.5
3,504,468	-		Pf1N1B4_3117	0.45	+1.4
3,504,485	+		Pf1N1B4_3117	0.45	-0.6
3,504,485	+		Pf1N1B4_3117	0.45	+3.1
3,504,486	-		Pf1N1B4_3117	0.45	+0.4
3,504,495	+		Pf1N1B4_3117	0.46	-0.7
3,504,495	+		Pf1N1B4_3117	0.46	+0.7
3,504,686	+		Pf1N1B4_3117	0.53	-0.7
3,504,799	-		Pf1N1B4_3117	0.58	-0.0
3,504,799	-		Pf1N1B4_3117	0.58	-0.6
3,504,799	-		Pf1N1B4_3117	0.58	+0.7
3,505,163	+		Pf1N1B4_3117	0.72	-0.3
3,505,561	+		Pf1N1B4_3117	0.87	-0.3
3,505,561	+		Pf1N1B4_3117	0.87	+1.5
3,505,562	-		Pf1N1B4_3117	0.87	+0.5
3,505,562	-		Pf1N1B4_3117	0.87	+1.1
3,505,640	-				-1.6
3,505,656	-				+1.2
3,505,769	+				-0.6
3,505,769	+				-1.0
3,505,769	+				-0.1
3,505,769	+				+1.6
3,505,769	+				+3.6
3,505,769	+				+0.2
3,505,769	+				-1.3
3,505,770	-				-0.0
3,505,770	-				-0.9
3,505,770	-				+1.0
3,505,770	-				+0.5
3,505,770	-				-0.6
3,505,781	+				-1.5
3,505,782	-				+0.5
3,505,782	-				+0.3
3,505,841	+				-1.6
3,505,841	+				-0.1
3,505,842	-				+0.7
3,505,887	+				-0.5
3,505,887	+				-0.8
3,505,887	+				+0.3
3,505,887	+				+1.2
3,505,888	-				+0.5
3,505,888	-				-0.1
3,505,888	-				-0.5
3,505,900	+				-1.0
3,505,900	+				+0.8
3,505,900	+				-1.4
3,505,901	-				+1.8
3,505,901	-				-1.2
3,505,973	-				+0.7
3,505,973	-				+0.3
3,505,991	+				-0.2
3,505,992	-				-0.0
3,506,030	+				+0.8
3,506,030	+				+0.2
3,506,030	+				+0.1
3,506,030	+				+1.0
3,506,031	-				-2.6
3,506,031	-				+0.9
3,506,041	+				+0.2
3,506,041	+				+1.5
3,506,082	+				-1.3
3,506,825	-				-1.0
3,506,843	+				+0.5
3,506,843	+				-0.8
3,506,843	+				+0.5
3,506,844	-				-0.5
3,506,844	-				-0.5
3,506,844	-				+1.4