Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3115

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
3,501,276	-				+3.4
3,501,348	+				+3.8
3,501,350	+				+3.6
3,501,350	+				+3.5
3,501,351	-				+3.8
3,501,367	-				+4.7
3,501,502	-		Pf1N1B4_3115	0.15	+3.9
3,501,514	+		Pf1N1B4_3115	0.16	+3.6
3,501,514	+		Pf1N1B4_3115	0.16	+3.6
3,501,514	+		Pf1N1B4_3115	0.16	+3.6
3,501,514	+		Pf1N1B4_3115	0.16	+3.3
3,501,514	+		Pf1N1B4_3115	0.16	+3.9
3,501,514	+		Pf1N1B4_3115	0.16	+4.4
3,501,514	+		Pf1N1B4_3115	0.16	+4.2
3,501,514	+		Pf1N1B4_3115	0.16	+3.9
3,501,515	-		Pf1N1B4_3115	0.16	+4.7
3,501,515	-				+3.0
3,501,515	-		Pf1N1B4_3115	0.16	+4.1
3,501,515	-				+4.6
3,501,515	-		Pf1N1B4_3115	0.16	+3.4
3,501,515	-		Pf1N1B4_3115	0.16	+4.5
3,501,515	-		Pf1N1B4_3115	0.16	+3.8
3,501,515	-		Pf1N1B4_3115	0.16	+3.6
3,501,523	+		Pf1N1B4_3115	0.17	+3.6
3,501,554	-		Pf1N1B4_3115	0.20	+3.5
3,501,554	-				+4.1
3,501,554	-		Pf1N1B4_3115	0.20	+3.3
3,501,554	-		Pf1N1B4_3115	0.20	+3.3
3,501,697	+		Pf1N1B4_3115	0.34	+4.3
3,501,764	+		Pf1N1B4_3115	0.41	+4.1
3,501,764	+		Pf1N1B4_3115	0.41	+4.1
3,501,764	+				+3.9
3,501,805	+		Pf1N1B4_3115	0.45	+3.2
3,501,806	-		Pf1N1B4_3115	0.45	+3.6
3,501,806	-		Pf1N1B4_3115	0.45	+3.2
3,501,864	+		Pf1N1B4_3115	0.50	+3.8
3,501,904	+		Pf1N1B4_3115	0.54	+4.1
3,501,904	+		Pf1N1B4_3115	0.54	+5.5
3,501,904	+				+4.7
3,501,904	+				+2.5
3,501,905	-		Pf1N1B4_3115	0.55	+3.5
3,501,905	-				+3.4
3,502,010	+		Pf1N1B4_3115	0.65	+3.6
3,502,010	+		Pf1N1B4_3115	0.65	+3.8
3,502,011	-		Pf1N1B4_3115	0.65	+4.0
3,502,066	-		Pf1N1B4_3115	0.71	+4.3
3,502,066	-				+3.9
3,502,244	+		Pf1N1B4_3115	0.88	+3.4
3,502,244	+		Pf1N1B4_3115	0.88	+3.3
3,502,244	+		Pf1N1B4_3115	0.88	+1.7
3,502,244	+		Pf1N1B4_3115	0.88	+3.1
3,502,245	-		Pf1N1B4_3115	0.88	+3.8
3,502,423	+				+0.6
3,502,423	+				+2.9
3,502,423	+				-0.8
3,502,424	-				+0.1
3,502,424	-				+1.5
3,502,424	-				+0.3
3,502,425	+				-1.3
3,502,425	+				-0.9
3,502,425	+				+1.1
3,502,425	+				+0.9
3,502,425	+				-1.5
3,502,426	-				+1.8
3,502,426	-				+1.5
3,502,426	-				-0.0
3,502,463	+				+0.5
3,502,463	+				+1.5
3,502,476	+				+0.3
3,502,476	+				-1.5
3,502,476	+				+1.5
3,502,477	-				+1.0
3,502,489	-				+0.3
3,502,499	-				+0.5
3,502,516	-				+0.9
3,502,537	+				-0.6
3,502,636	-				+0.3
3,502,650	+				+2.0
3,502,651	-				-2.3
3,502,653	+				+1.5
3,502,654	-				-0.2
3,503,241	-				-1.6
3,503,292	+				-1.9
3,503,293	-				-2.3
3,503,315	+				+0.3
3,503,315	+				-1.0
3,503,315	+				+0.4
3,503,315	+				-0.3
3,503,315	+				-0.8
3,503,316	-				+0.8
3,503,329	+				-0.9
3,503,329	+				-1.6
3,503,330	-				+0.8
3,503,330	-				-0.9
3,503,334	+				-1.3
3,503,334	+				-2.4
3,503,334	+				+0.2
3,503,334	+				+0.7
3,503,334	+				+0.4
3,503,334	+				+1.9
3,503,334	+				-0.6
3,503,334	+				+2.1
3,503,334	+				+0.0
3,503,334	+				+1.5
3,503,334	+				+0.4
3,503,334	+				-0.6
3,503,334	+				+0.9
3,503,334	+				-1.2
3,503,334	+				+0.7
3,503,334	+				-1.8
3,503,334	+				+1.0
3,503,334	+				-0.5
3,503,334	+				+0.2
3,503,334	+				+1.0
3,503,334	+				+0.9
3,503,334	+				-0.8
3,503,334	+				-0.8
3,503,335	-				+1.4
3,503,335	-				-1.0
3,503,335	-				-2.1
3,503,335	-				+2.1
3,503,335	-				+0.7
3,503,335	-				+0.3
3,503,335	-				-0.0
3,503,335	-				+0.6
3,503,335	-				-0.5
3,503,335	-				+0.1
3,503,335	-				+3.0
3,503,336	+				+1.2
3,503,336	+				-0.4
3,503,336	+				+1.4
3,503,336	+				-0.6
3,503,336	+				-0.0
3,503,336	+				-0.0
3,503,337	-				-0.8