Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2748

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
3,087,343	-		Pf1N1B4_2747	0.55	+0.2
3,087,444	+		Pf1N1B4_2747	0.60	-0.6
3,087,444	+		Pf1N1B4_2747	0.60	-0.6
3,087,444	+		Pf1N1B4_2747	0.60	-2.2
3,087,445	-		Pf1N1B4_2747	0.60	+0.2
3,087,528	+		Pf1N1B4_2747	0.65	-0.9
3,087,555	+		Pf1N1B4_2747	0.66	+0.9
3,087,556	-		Pf1N1B4_2747	0.66	+1.6
3,087,556	-		Pf1N1B4_2747	0.66	+1.2
3,087,669	+		Pf1N1B4_2747	0.72	-0.6
3,087,669	+		Pf1N1B4_2747	0.72	+1.8
3,087,670	-				-1.0
3,087,670	-		Pf1N1B4_2747	0.72	-1.6
3,087,670	-		Pf1N1B4_2747	0.72	-0.8
3,087,671	+		Pf1N1B4_2747	0.72	-2.5
3,087,672	-		Pf1N1B4_2747	0.72	-1.0
3,087,672	-		Pf1N1B4_2747	0.72	+2.2
3,087,672	-				+0.6
3,087,724	-				+3.1
3,087,939	+		Pf1N1B4_2747	0.86	-0.4
3,087,940	-				+0.6
3,087,940	-		Pf1N1B4_2747	0.86	+0.6
3,087,940	-		Pf1N1B4_2747	0.86	+0.3
3,087,940	-		Pf1N1B4_2747	0.86	-0.8
3,087,940	-		Pf1N1B4_2747	0.86	-0.0
3,087,942	+		Pf1N1B4_2747	0.86	+1.3
3,087,942	+		Pf1N1B4_2747	0.86	+1.6
3,087,943	-		Pf1N1B4_2747	0.86	+1.9
3,087,943	-		Pf1N1B4_2747	0.86	+0.3
3,087,943	-		Pf1N1B4_2747	0.86	+0.6
3,088,014	+				+0.7
3,088,053	+				+0.7
3,088,053	+				-0.1
3,088,053	+				-0.0
3,088,053	+				+0.4
3,088,054	-				-0.3
3,088,054	-				-1.4
3,088,054	-				-0.4
3,088,181	-				-0.0
3,088,181	-				-0.7
3,088,197	+				+2.7
3,088,208	+				+0.4
3,088,222	+				+0.1
3,088,222	+				-0.4
3,088,222	+				-0.1
3,088,222	+				-0.0
3,088,222	+				-0.8
3,088,222	+				-0.3
3,088,222	+				-0.4
3,088,222	+				-0.9
3,088,222	+				+2.1
3,088,222	+				-1.3
3,088,222	+				-1.8
3,088,223	-				-2.0
3,088,223	-				-2.4
3,088,223	-				-0.4
3,088,223	-				-1.3
3,088,223	-				-2.4
3,088,223	-				-1.6
3,088,223	-				-1.3
3,088,223	-				-2.8
3,088,223	-				+0.4
3,088,310	+				-1.6
3,088,310	+				-2.7
3,088,310	+				-2.8
3,088,311	-				-1.8
3,088,311	-				-1.6
3,088,311	-				-0.8
3,088,311	-				+0.6
3,088,314	+				+0.8
3,088,314	+				-0.0
3,088,314	+				-3.0
3,088,315	-				-2.9
3,088,315	-				-1.1
3,088,315	-				-1.0
3,088,315	-				-0.8
3,088,315	-				+0.2
3,088,498	+		Pf1N1B4_2748	0.29	-0.4
3,088,498	+		Pf1N1B4_2748	0.29	-0.2
3,088,498	+		Pf1N1B4_2748	0.29	-0.2
3,088,498	+		Pf1N1B4_2748	0.29	-2.5
3,088,498	+		Pf1N1B4_2748	0.29	-1.3
3,088,498	+		Pf1N1B4_2748	0.29	-0.5
3,088,498	+		Pf1N1B4_2748	0.29	-0.8
3,088,498	+		Pf1N1B4_2748	0.29	-0.4
3,088,498	+		Pf1N1B4_2748	0.29	-0.3
3,088,498	+		Pf1N1B4_2748	0.29	-2.0
3,088,499	-		Pf1N1B4_2748	0.29	-2.4
3,088,499	-		Pf1N1B4_2748	0.29	+0.6
3,088,499	-		Pf1N1B4_2748	0.29	-2.0
3,088,499	-		Pf1N1B4_2748	0.29	-3.0
3,088,499	-		Pf1N1B4_2748	0.29	+0.6
3,088,499	-		Pf1N1B4_2748	0.29	-0.0
3,088,499	-		Pf1N1B4_2748	0.29	-1.9
3,088,499	-		Pf1N1B4_2748	0.29	-0.4
3,088,501	+		Pf1N1B4_2748	0.29	-1.6
3,088,502	-		Pf1N1B4_2748	0.29	-0.3
3,088,502	-		Pf1N1B4_2748	0.29	-2.4
3,088,504	+		Pf1N1B4_2748	0.30	-2.2
3,088,504	+		Pf1N1B4_2748	0.30	+2.1
3,088,504	+		Pf1N1B4_2748	0.30	-2.4
3,088,505	-		Pf1N1B4_2748	0.30	-1.0
3,088,505	-		Pf1N1B4_2748	0.30	-1.4
3,088,505	-		Pf1N1B4_2748	0.30	-1.4
3,088,505	-		Pf1N1B4_2748	0.30	-1.6
3,088,515	+		Pf1N1B4_2748	0.31	-1.0
3,088,515	+		Pf1N1B4_2748	0.31	-0.4
3,088,528	+		Pf1N1B4_2748	0.33	-0.8
3,088,528	+		Pf1N1B4_2748	0.33	-0.0
3,088,553	-		Pf1N1B4_2748	0.37	-0.0
3,088,708	+		Pf1N1B4_2748	0.60	-1.3
3,088,799	+		Pf1N1B4_2748	0.73	-2.2
3,088,799	+		Pf1N1B4_2748	0.73	-0.4
3,088,799	+		Pf1N1B4_2748	0.73	-0.6
3,088,799	+		Pf1N1B4_2748	0.73	-1.0
3,088,799	+		Pf1N1B4_2748	0.73	-2.0
3,088,799	+		Pf1N1B4_2748	0.73	+1.0
3,088,800	-		Pf1N1B4_2748	0.73	-0.6
3,088,800	-		Pf1N1B4_2748	0.73	-2.6
3,088,800	-		Pf1N1B4_2748	0.73	-0.8
3,088,859	-		Pf1N1B4_2748	0.82	-0.4
3,088,878	+		Pf1N1B4_2748	0.85	-0.0
3,088,878	+		Pf1N1B4_2748	0.85	-2.7
3,088,879	-		Pf1N1B4_2748	0.85	+1.0
3,088,879	-		Pf1N1B4_2748	0.85	-2.8
3,089,007	-				-0.0
3,089,226	-		Pf1N1B4_2749	0.20	-0.7
3,089,226	-		Pf1N1B4_2749	0.20	-1.3
3,089,226	-		Pf1N1B4_2749	0.20	-1.5
3,089,226	-		Pf1N1B4_2749	0.20	+0.1
3,089,314	-		Pf1N1B4_2749	0.30	-0.9
3,089,455	+		Pf1N1B4_2749	0.47	+0.7
3,089,455	+		Pf1N1B4_2749	0.47	-2.5
3,089,456	-		Pf1N1B4_2749	0.47	+2.1
3,089,456	-		Pf1N1B4_2749	0.47	-0.5
3,089,456	-		Pf1N1B4_2749	0.47	-0.2
3,089,456	-		Pf1N1B4_2749	0.47	-0.3
3,089,471	-		Pf1N1B4_2749	0.49	-0.0
3,089,515	+		Pf1N1B4_2749	0.54	-1.3
3,089,516	-		Pf1N1B4_2749	0.54	-1.9
3,089,516	-		Pf1N1B4_2749	0.54	-0.6
3,089,805	-		Pf1N1B4_2749	0.88	+0.5