Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1984

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
2,269,033	-		Pf1N1B4_1982	0.86	-1.9
2,269,033	-		Pf1N1B4_1982	0.86	+0.4
2,269,034	+		Pf1N1B4_1982	0.86	-0.8
2,269,034	+		Pf1N1B4_1982	0.86	-0.6
2,269,034	+		Pf1N1B4_1982	0.86	-0.7
2,269,034	+		Pf1N1B4_1982	0.86	+0.2
2,269,034	+		Pf1N1B4_1982	0.86	-1.4
2,269,034	+		Pf1N1B4_1982	0.86	+1.1
2,269,034	+		Pf1N1B4_1982	0.86	-0.8
2,269,034	+		Pf1N1B4_1982	0.86	-0.7
2,269,034	+		Pf1N1B4_1982	0.86	-0.6
2,269,034	+		Pf1N1B4_1982	0.86	+0.7
2,269,034	+		Pf1N1B4_1982	0.86	-0.3
2,269,035	-		Pf1N1B4_1982	0.86	-2.3
2,269,035	-		Pf1N1B4_1982	0.86	-0.3
2,269,035	-		Pf1N1B4_1982	0.86	+0.3
2,269,035	-		Pf1N1B4_1982	0.86	+0.1
2,269,035	-		Pf1N1B4_1982	0.86	-0.6
2,269,035	-		Pf1N1B4_1982	0.86	+0.4
2,269,223	+				-1.4
2,269,223	+				-0.3
2,269,223	+				+0.2
2,269,224	-				-1.6
2,269,224	-				+0.4
2,269,224	-				+1.6
2,269,262	+				-1.8
2,269,263	-				-0.9
2,269,263	-				-1.3
2,269,296	+				-1.5
2,269,296	+				-1.4
2,269,296	+				-0.6
2,269,296	+				+0.2
2,269,296	+				+1.6
2,269,297	-				-0.6
2,269,297	-				+0.3
2,269,297	-				-0.0
2,269,297	-				-0.8
2,269,342	+				-0.2
2,269,357	-				+0.3
2,269,522	+		Pf1N1B4_1983	0.31	-2.0
2,269,522	+		Pf1N1B4_1983	0.31	-0.4
2,269,523	-		Pf1N1B4_1983	0.31	-0.4
2,269,523	-		Pf1N1B4_1983	0.31	+1.7
2,269,578	-		Pf1N1B4_1983	0.41	+0.6
2,269,664	+		Pf1N1B4_1983	0.58	-0.6
2,269,664	+		Pf1N1B4_1983	0.58	+0.2
2,269,664	+		Pf1N1B4_1983	0.58	-0.4
2,269,665	-		Pf1N1B4_1983	0.58	-1.0
2,269,665	-		Pf1N1B4_1983	0.58	+0.9
2,269,665	-		Pf1N1B4_1983	0.58	-0.1
2,269,665	-		Pf1N1B4_1983	0.58	+0.8
2,269,685	+				-0.0
2,269,821	-				+1.0
2,269,829	+		Pf1N1B4_1983	0.89	-0.4
2,269,830	-		Pf1N1B4_1983	0.90	+0.1
2,269,918	+				-1.9
2,269,919	-				-0.3
2,270,089	-		Pf1N1B4_1984	0.14	-0.4
2,270,099	-		Pf1N1B4_1984	0.15	-0.0
2,270,099	-		Pf1N1B4_1984	0.15	+1.7
2,270,147	+		Pf1N1B4_1984	0.20	+2.9
2,270,302	+		Pf1N1B4_1984	0.38	+0.3
2,270,302	+		Pf1N1B4_1984	0.38	-1.0
2,270,355	+		Pf1N1B4_1984	0.44	-1.9
2,270,355	+		Pf1N1B4_1984	0.44	+1.2
2,270,356	-		Pf1N1B4_1984	0.44	-0.4
2,270,356	-		Pf1N1B4_1984	0.44	+2.6
2,270,530	-		Pf1N1B4_1984	0.63	+0.9
2,270,530	-		Pf1N1B4_1984	0.63	-1.4
2,270,530	-		Pf1N1B4_1984	0.63	+0.8
2,270,554	+		Pf1N1B4_1984	0.66	-0.0
2,270,555	-		Pf1N1B4_1984	0.66	-2.4
2,270,571	+		Pf1N1B4_1984	0.67	+0.7
2,270,572	-		Pf1N1B4_1984	0.68	+0.4
2,270,690	+		Pf1N1B4_1984	0.81	-1.4
2,270,787	-				-0.0
2,270,803	+				-0.0
2,270,803	+				+0.7
2,270,803	+				+0.2
2,270,803	+				+1.6
2,270,803	+				-1.1
2,270,803	+				-0.0
2,270,803	+				-1.3
2,270,804	-				-1.2
2,270,804	-				+0.2
2,270,824	+				-1.1
2,270,824	+				+0.7
2,270,824	+				-0.3
2,270,824	+				-1.9
2,270,825	-				+1.0
2,270,825	-				+0.6
2,270,904	+				+0.0
2,270,904	+				+1.6
2,270,905	-				+0.2
2,270,905	-				+0.6
2,270,912	-				+1.2
2,270,917	+				-1.0
2,270,937	+				+0.9
2,270,937	+				-0.9
2,270,938	-				+2.8
2,270,938	-				-0.8
2,270,979	+				-1.0
2,270,980	-				+0.7
2,270,980	-				-0.4
2,271,082	-		Pf1N1B4_1985	0.14	-0.0
2,271,089	-		Pf1N1B4_1985	0.15	-0.4
2,271,104	+		Pf1N1B4_1985	0.16	+0.3
2,271,104	+		Pf1N1B4_1985	0.16	+0.7
2,271,104	+		Pf1N1B4_1985	0.16	-1.3
2,271,193	+		Pf1N1B4_1985	0.22	-1.0
2,271,193	+		Pf1N1B4_1985	0.22	+0.1
2,271,270	-		Pf1N1B4_1985	0.28	+2.1
2,271,270	-		Pf1N1B4_1985	0.28	-0.4
2,271,294	+		Pf1N1B4_1985	0.30	-0.4
2,271,294	+		Pf1N1B4_1985	0.30	+1.6
2,271,295	-		Pf1N1B4_1985	0.30	-2.1
2,271,295	-		Pf1N1B4_1985	0.30	+1.4
2,271,529	+		Pf1N1B4_1985	0.48	-1.9
2,271,530	-		Pf1N1B4_1985	0.48	-1.9
2,271,530	-		Pf1N1B4_1985	0.48	-0.9