Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1976

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
2,257,941	-		Pf1N1B4_1974	0.78	-0.7
2,258,034	+				-0.9
2,258,034	+				-0.5
2,258,035	-				-0.3
2,258,035	-				-1.3
2,258,035	-				-1.0
2,258,035	-				+1.4
2,258,117	+				+0.5
2,258,117	+				-1.1
2,258,117	+				-1.0
2,258,117	+				+0.7
2,258,118	-				-0.4
2,258,118	-				-1.0
2,258,118	-				+1.0
2,258,118	-				+0.1
2,258,118	-				-0.2
2,258,179	-				+0.2
2,258,575	+		Pf1N1B4_1975	0.74	-0.4
2,258,576	-		Pf1N1B4_1975	0.74	-1.8
2,258,576	-		Pf1N1B4_1975	0.74	-1.2
2,258,576	-		Pf1N1B4_1975	0.74	-0.0
2,258,695	+				+1.5
2,258,695	+				-0.0
2,258,695	+				-1.0
2,258,821	+				+1.5
2,258,821	+				+0.8
2,258,821	+				+1.5
2,258,821	+				-0.1
2,258,821	+				+0.5
2,258,821	+				-0.8
2,258,821	+				+0.7
2,258,821	+				-2.4
2,258,822	-				-1.3
2,258,822	-				-0.8
2,258,822	-				-1.4
2,258,822	-				-1.3
2,258,822	-				-0.0
2,258,822	-				-1.2
2,258,822	-				+1.1
2,258,822	-				+0.7
2,259,024	+		Pf1N1B4_1976	0.15	-1.5
2,259,024	+		Pf1N1B4_1976	0.15	+0.5
2,259,024	+		Pf1N1B4_1976	0.15	+1.5
2,259,024	+				-0.5
2,259,025	-		Pf1N1B4_1976	0.15	-0.8
2,259,025	-		Pf1N1B4_1976	0.15	+0.5
2,259,025	-		Pf1N1B4_1976	0.15	+0.9
2,259,025	-		Pf1N1B4_1976	0.15	+1.5
2,259,025	-		Pf1N1B4_1976	0.15	-1.6
2,259,025	-		Pf1N1B4_1976	0.15	-1.5
2,259,098	+		Pf1N1B4_1976	0.20	-0.5
2,259,098	+		Pf1N1B4_1976	0.20	-1.4
2,259,100	+		Pf1N1B4_1976	0.20	-1.6
2,259,100	+		Pf1N1B4_1976	0.20	+0.1
2,259,100	+		Pf1N1B4_1976	0.20	+0.2
2,259,100	+		Pf1N1B4_1976	0.20	-1.6
2,259,101	-		Pf1N1B4_1976	0.20	+0.2
2,259,101	-		Pf1N1B4_1976	0.20	-1.0
2,259,101	-		Pf1N1B4_1976	0.20	-0.6
2,259,166	+		Pf1N1B4_1976	0.25	-0.6
2,259,166	+		Pf1N1B4_1976	0.25	+0.2
2,259,166	+		Pf1N1B4_1976	0.25	+1.5
2,259,166	+		Pf1N1B4_1976	0.25	-0.0
2,259,167	-		Pf1N1B4_1976	0.25	-1.8
2,259,190	+		Pf1N1B4_1976	0.26	+0.4
2,259,190	+		Pf1N1B4_1976	0.26	-0.3
2,259,190	+		Pf1N1B4_1976	0.26	-0.6
2,259,190	+		Pf1N1B4_1976	0.26	-0.3
2,259,191	-		Pf1N1B4_1976	0.26	-0.6
2,259,191	-		Pf1N1B4_1976	0.26	-0.3
2,259,191	-		Pf1N1B4_1976	0.26	+2.5
2,259,191	-		Pf1N1B4_1976	0.26	-0.2
2,259,191	-		Pf1N1B4_1976	0.26	-0.5
2,259,191	-		Pf1N1B4_1976	0.26	+0.2
2,259,389	+		Pf1N1B4_1976	0.41	-1.6
2,259,389	+		Pf1N1B4_1976	0.41	+0.2
2,259,390	-		Pf1N1B4_1976	0.41	+0.5
2,259,390	-		Pf1N1B4_1976	0.41	-0.5
2,259,390	-		Pf1N1B4_1976	0.41	+1.6
2,259,390	-		Pf1N1B4_1976	0.41	+0.9
2,259,391	+		Pf1N1B4_1976	0.41	+1.7
2,259,391	+		Pf1N1B4_1976	0.41	+0.7
2,259,391	+		Pf1N1B4_1976	0.41	+0.1
2,259,391	+		Pf1N1B4_1976	0.41	+0.3
2,259,391	+		Pf1N1B4_1976	0.41	-1.6
2,259,392	-		Pf1N1B4_1976	0.41	-0.9
2,259,421	+		Pf1N1B4_1976	0.43	-0.2
2,259,422	-		Pf1N1B4_1976	0.43	-1.0
2,259,422	-		Pf1N1B4_1976	0.43	-0.5
2,259,422	-		Pf1N1B4_1976	0.43	+2.5
2,260,042	+		Pf1N1B4_1976	0.87	+0.7
2,260,042	+		Pf1N1B4_1976	0.87	-1.1
2,260,042	+		Pf1N1B4_1976	0.87	+0.8
2,260,043	-		Pf1N1B4_1976	0.87	+0.1
2,260,043	-		Pf1N1B4_1976	0.87	-1.6
2,260,043	-		Pf1N1B4_1976	0.87	+0.3
2,260,172	+				-0.7
2,260,173	-				+0.5
2,260,173	-				-2.1
2,260,173	-				+0.6
2,260,210	+				-0.4
2,260,210	+				-1.6
2,260,210	+				-0.7
2,260,210	+				-1.0
2,260,210	+				-0.3
2,260,210	+				-1.9
2,260,210	+				+1.0
2,260,210	+				-0.9
2,260,210	+				-0.0
2,260,210	+				+0.2
2,260,210	+				+2.1
2,260,210	+				+1.3
2,260,210	+				-0.5
2,260,210	+				+1.0
2,260,211	-				-0.3
2,260,211	-				+0.8
2,260,211	-				+1.5
2,260,211	-				-0.8
2,260,211	-				+0.3
2,260,211	-				+1.7
2,260,211	-				-0.5
2,260,229	+				+0.4
2,260,229	+				-1.0
2,260,230	-				-0.8
2,260,230	-				+1.1
2,260,230	-				-0.5
2,260,230	-				-0.5
2,260,263	+				+0.2
2,260,263	+				-0.6
2,260,263	+				+0.2
2,260,263	+				+1.3
2,260,263	+				-0.5
2,260,264	-				-0.3
2,260,264	-				-1.8
2,260,280	+				+1.5
2,260,281	-				-1.8
2,260,288	+				-1.6
2,260,288	+				-1.0
2,260,288	+				-0.5
2,260,288	+				-1.8
2,260,288	+				-0.8
2,260,289	-				-0.0
2,260,289	-				-0.3
2,260,289	-				+0.2
2,260,289	-				-0.0
2,260,291	+				-0.5
2,260,350	+				-1.6
2,260,350	+				-1.0
2,260,350	+				-1.5
2,260,350	+				+0.0
2,260,350	+				-0.1
2,260,350	+				+0.5
2,260,351	-				+1.5
2,260,351	-				-0.3
2,260,351	-				-0.5
2,260,351	-				+1.5
2,260,354	+				+0.0
2,260,354	+				+1.0
2,260,354	+				-2.5
2,260,354	+				+0.2
2,260,355	-				-0.3
2,260,355	-				+1.3
2,260,364	+				-0.8
2,260,373	+				-1.0
2,260,373	+				-0.3
2,260,373	+				-0.0
2,260,373	+				-0.0
2,260,373	+				+0.7
2,260,373	+				+1.5
2,260,373	+				-1.0
2,260,374	-				+3.0
2,260,374	-				-0.5
2,260,374	-				+0.8
2,260,374	-				+0.8
2,260,374	-				-1.6
2,260,374	-				-0.7
2,260,432	-				-0.0
2,260,466	+				+3.1
2,260,466	+				-0.6
2,260,466	+				-0.5
2,260,466	+				+0.7
2,260,466	+				-0.2
2,260,466	+				-1.3
2,260,466	+				+0.5
2,260,466	+				-0.8
2,260,466	+				+0.8
2,260,466	+				-1.2
2,260,466	+				+1.1
2,260,466	+				-1.6
2,260,466	+				+0.2
2,260,466	+				-2.2
2,260,466	+				-0.8
2,260,466	+				-1.0
2,260,466	+				-0.3
2,260,467	-				+1.3
2,260,467	-				+1.2
2,260,467	-				+1.0
2,260,467	-				+0.2
2,260,467	-				+2.5
2,260,467	-				-0.6
2,260,467	-				-0.0
2,260,467	-				-0.9
2,260,475	+				+0.7
2,260,762	+		Pf1N1B4_1977	0.18	-0.5
2,260,762	+		Pf1N1B4_1977	0.18	-1.0
2,260,832	+		Pf1N1B4_1977	0.21	-0.7
2,260,864	+		Pf1N1B4_1977	0.23	-1.2
2,260,864	+		Pf1N1B4_1977	0.23	-1.0
2,260,864	+		Pf1N1B4_1977	0.23	-0.3
2,260,865	-		Pf1N1B4_1977	0.23	-0.6
2,260,865	-		Pf1N1B4_1977	0.23	+0.7
2,261,084	+		Pf1N1B4_1977	0.34	-0.2
2,261,084	+		Pf1N1B4_1977	0.34	+1.1
2,261,084	+		Pf1N1B4_1977	0.34	-1.9
2,261,085	-		Pf1N1B4_1977	0.34	-0.5
2,261,085	-		Pf1N1B4_1977	0.34	+0.8
2,261,085	-		Pf1N1B4_1977	0.34	-0.5
2,261,085	-		Pf1N1B4_1977	0.34	+2.1